LOCUS NC_010682 3942557 bp DNA circular BCT 17-MAR-2010 DEFINITION Ralstonia pickettii 12J chromosome 1, complete sequence. ACCESSION NC_010682 VERSION NC_010682.1 GI:187927112 DBLINK Project:17631 KEYWORDS . SOURCE Ralstonia pickettii 12J ORGANISM Ralstonia pickettii 12J Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia. REFERENCE 1 (bases 1 to 3942557) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Meincke,L., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Marsh,T. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome1 of Ralstonia pickettii 12J JOURNAL Unpublished REFERENCE 2 (bases 1 to 3942557) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (09-MAY-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3942557) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Meincke,L., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Marsh,T. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (01-MAY-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP001068. URL -- http://www.jgi.doe.gov JGI Project ID: 4003028 Source DNA and bacteria available from Terry Marsh (MARSHT@msu.edu) Contacts: Terry Marsh (MARSHT@msu.edu) David Bruce (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3942557 /organism="Ralstonia pickettii 12J" /mol_type="genomic DNA" /strain="12J" /db_xref="taxon:402626" /chromosome="1" gene 328..1917 /gene="dnaA" /locus_tag="Rpic_0001" /db_xref="GeneID:6289854" CDS 328..1917 /gene="dnaA" /locus_tag="Rpic_0001" /note="binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself." /codon_start=1 /transl_table=11 /product="chromosomal replication initiation protein" /protein_id="YP_001897600.1" /db_xref="GI:187927113" /db_xref="InterPro:IPR001957" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013159" /db_xref="InterPro:IPR013317" /db_xref="GeneID:6289854" /translation="MQDFWHAASAQLESELTPQQFKTWIKPLTPLSFDEQACTLRIAA PNRFKLDWVKSQFSGRIQSLACDYWEATVDVQFVLDPSAGQRQAALQPALAPVPMQPL GAQAGQPRQAMPAGNGVSHDAATLRPAPSVYRETALATASHAAADIDVPVMDAAEVSA RSYRMPPQAPAVVATLAAPPQAHVDDSVHERSRLNQILTFDNFVTGKANQLARAAAIQ VANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLMENPRARIRYIHAEQYVSDVVKAY QRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEALIANRAQVIITSDTYP KEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAQAENVTVPEEVAFFVAKHLR SNVRELEGALRKILAYSNFHGKEITIEVTREALKDLLTVQNRQISVENIQKTCADFYN IKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIAD ERTKDAQLNHELHVLEQTLKG" gene 2194..3309 /locus_tag="Rpic_0002" /db_xref="GeneID:6286480" CDS 2194..3309 /locus_tag="Rpic_0002" /EC_number="2.7.7.7" /note="binds the polymerase to DNA and acts as a sliding clamp" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit beta" /protein_id="YP_001897601.1" /db_xref="GI:187927114" /db_xref="InterPro:IPR001001" /db_xref="GeneID:6286480" /translation="MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLITKQGERVS FLSTDIEIQITTHADCGAGAGDVATTVAARKLVDILRAMPDGEVALTLNDKRMTVQSG KSRFALQTLAAEEFPTVAEATDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGML LVVDGKQVMAVATDGHRLAYCGVETGEQPAGAGGRQEVIIPRKTILELQRLLEDVDDP VSVQLASNQVKFTFGNIELISKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTA ILTTDKFKGVRCMLDTNVLKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLA NLKAEKVQVSLGDSNSSALITLPDDDTFKYVVMPMRI" gene 3438..5966 /gene="gyrB" /locus_tag="Rpic_0003" /db_xref="GeneID:6286481" CDS 3438..5966 /gene="gyrB" /locus_tag="Rpic_0003" /note="negatively supercoils closed circular double-stranded DNA" /codon_start=1 /transl_table=11 /product="DNA gyrase subunit B" /protein_id="YP_001897602.1" /db_xref="GI:187927115" /db_xref="InterPro:IPR000565" /db_xref="InterPro:IPR001241" /db_xref="InterPro:IPR002288" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR006171" /db_xref="InterPro:IPR011557" /db_xref="InterPro:IPR011558" /db_xref="InterPro:IPR013506" /db_xref="GeneID:6286481" /translation="MTEEQKPQSTPAEANSYDAASIQILEGLEAVRKRPGMYIGDTSD GTGLHHLVFEVLDNSIDEALAGHCTEIQVTIHTDNSISVIDNGRGIPTGIKFDDKHEP KRSATEIAMTELHAGGKFNQNSYKVSGGLHGVGVSCVNGLSKWMKVTVRQGGKVHYIE FAQGVPQNRLIETVQGPDGQMVEVSPLRVLGTTDKRGTEVHFLADEEIFTNVEYHYEI LSKRIRELSFLNNGVHIRLTDQRTGKEEDFAFSGGVKGFVEYINKNKTVLHPTIFFAA GEKDGVAVEVSMQWNDAYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEI AKKAKVDTSGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALSDF LLETPVDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALS ELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLSSQEVLTLITAMGT GIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPL YKIKHGKEERYIKDDVEMAAYLVRQALDTAVLVRPDGTEIAGDALAELARQYQLSRGV IERLSRVIDADALRAIAEGVSLDLSNEAAAEASARTLKARLLEMQGNASSANGGATAD AFMQYDEKTEKYRIMVVRRQHGNQRLSHIDADFVAGADYTALSSTAATFQGLIGDGAK VRRGTGDKVREQNVADFHAAMTWLLSEAERGVSRQRYKGLGEMNPEQLWETTMDVTQR RLLRVQIEDAIAADQIFTTLMGDDVEPRRNFIESNALVARNIDV" gene 6281..8413 /locus_tag="Rpic_0004" /db_xref="GeneID:6288115" CDS 6281..8413 /locus_tag="Rpic_0004" /note="PFAM: N-6 DNA methylase; KEGG: eca:ECA0584 restriction enzyme alpha subunit" /codon_start=1 /transl_table=11 /product="N-6 DNA methylase" /protein_id="YP_001897603.1" /db_xref="GI:187927116" /db_xref="InterPro:IPR002052" /db_xref="InterPro:IPR002296" /db_xref="InterPro:IPR003356" /db_xref="GeneID:6288115" /translation="MATGKRARSQLKPLVAASPQSEVEAYHFIRENLKEVGWVVKNPS RYSEGQVWTQNQCFEHPVLKSALKLMRPENIVKLSETKVWVIEAKSRKAALGQALKEA ENDYAAPINKGRGIKAVLISGVAGNDESGYEVRTKMLVRGRYESVTINGVEATGLLDP RTVETLLISGSPDIADYQVNEELFLRAAEQINATLHNGGINKNDRSRVMAALLLALVE TASLDLEGDLPVLIGDINNRTDSALRRHGKREFHPFVKIEPPTNPDSHVKYKAAIVRT IQQLLDLNIKSAMNSGTDVLGKFYEVFLRYGNGAKEIGIVLTPRHITRFAVDAVGVSP SDLVFDPACGTGGFLVAAFDHVRAKTKGAPLERFKRFGLFGIEQESSVAALAIVNMIF RGDGKNNIVEADCFNRFLTRSTNDGHATAQYVKAKPKLGEEPITRVFMNPPFALKKSD EHEWRFVETALKSMADGALLLAIVPMSVVSEGGSAGAWRRPLLEHHSVVAVVSLPEEL FYPVAVQAVAIILRKGVPHRAEQPVLWARVVNDGYRKSKGKRLPVPGVNDLDALKPKL RAFIADPDEPIEGEPARIKISPLDLSDPILELAPEAYLDSQVPTSKELQSRLDVQVRE NIAALVSLDLKSTSVGSGGIVDAAVGLSPISEEFPKRYSKFGEYSLNSLFELEAGDYH NLNSLEGGYSRGLVRGWEQWNCRFLRNS" gene 8418..8852 /locus_tag="Rpic_0005" /db_xref="GeneID:6288116" CDS 8418..8852 /locus_tag="Rpic_0005" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897604.1" /db_xref="GI:187927117" /db_xref="GeneID:6288116" /translation="MAYANAITIAFNGSPLTTKLHPYEFGAKDDVAVAVAREQGGAPL PVEALIFIQAQLNSERWRFSYYRKCFRAKLGRTLVELPEKRPGVPDIQFMVAAVRAQP YWWFLAPRLKNWVTRAPRHHSPDMALENGDGGSVRKTVKRAI" gene complement(9044..9454) /locus_tag="Rpic_0006" /db_xref="GeneID:6288117" CDS complement(9044..9454) /locus_tag="Rpic_0006" /note="KEGG: ava:Ava_4685 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897605.1" /db_xref="GI:187927118" /db_xref="GeneID:6288117" /translation="MSQNLILKLAGLIDLSIEQRMTITKMGDKSEAFCRKAVEVLGNN PGVLSVNYSLAEVKRDLAAFDALRPRVVRVEKLLEKMHDSQMALGSDLMTASLEGYAY LKVAGKGEALDTARAALSVRFSRGARKKVEVATE" gene 10376..10744 /locus_tag="Rpic_0007" /db_xref="GeneID:6288118" CDS 10376..10744 /locus_tag="Rpic_0007" /note="KEGG: rso:RSc3434 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897606.1" /db_xref="GI:187927119" /db_xref="GeneID:6288118" /translation="MPSNQSGHRPASYPSPPEPPTHAPTSSDTGTLTKNRTYLNGAIA AQAYLKRTRSAMRSHGQCRPGMLREQLQHLSAHAFPPAFIKGFVDAIDAYVSMSLGGR DVDPQAWDVLAAIERRGYSQ" gene complement(10906..11763) /locus_tag="Rpic_0008" /db_xref="GeneID:6288119" CDS complement(10906..11763) /locus_tag="Rpic_0008" /note="PFAM: Integrase catalytic region; KEGG: rme:Rmet_6067 integrase, catalytic region" /codon_start=1 /transl_table=11 /product="Integrase catalytic region" /protein_id="YP_001897607.1" /db_xref="GI:187927120" /db_xref="InterPro:IPR001584" /db_xref="GeneID:6288119" /translation="MLQVASSAYRRHAARLRDPSRRSDRARRDERLMPQVQRVWQENH RVYGADKVWRQLNREGVTVARCTVERLMRAQGLQGVRRGKRLRTTIADDAASRPVDRV NRQFRADRPNQLWVSDFTYVSTWQGWLYVAFVVDVYARRIVGWRVSKSMTTDFVLDAL EQALYARQPGNDGSLTHHSDRGSQYVSIRYSERLAEAGIEPSVGSRGDSYDNALAETI NGLYKAELIHRRAPWKTRESVELATLEWVAWFNHKRLHSSIGYIPPAEAEANYYNQLG KTADEAVLL" gene complement(11817..12146) /locus_tag="Rpic_0009" /db_xref="GeneID:6289277" CDS complement(11817..12146) /locus_tag="Rpic_0009" /note="PFAM: transposase IS3/IS911 family protein; KEGG: rme:Rmet_6068 transposase IS3/IS911" /codon_start=1 /transl_table=11 /product="transposase IS3/IS911 family protein" /protein_id="YP_001897608.1" /db_xref="GI:187927121" /db_xref="InterPro:IPR002514" /db_xref="GeneID:6289277" /translation="MSKNNANKFSPEVRERAVRLVQESRGEYPSLWVAVESIAPKIGC SAQTLLTWVKRHEVDSGQREGVTTSERERIKELERENRELRRANDILRTASAFFAQAE LDRKLKS" gene 12674..13633 /locus_tag="Rpic_0010" /db_xref="GeneID:6289278" CDS 12674..13633 /locus_tag="Rpic_0010" /note="PFAM: Fimbrial protein; KEGG: pae:PA5284 hypothetical protein" /codon_start=1 /transl_table=11 /product="Fimbrial protein" /protein_id="YP_001897609.1" /db_xref="GI:187927122" /db_xref="InterPro:IPR014779" /db_xref="GeneID:6289278" /translation="MKMHRLDLKAMRVVERAVAASLGLTAATSAFGADFRPFPTALSL PRGVAANTVVARAYLTPQTLCGEGTCRLVNFRPISHVNVASGDVPGFVSNGPTVITEI KGLRMQVLVNGEPQTRLDENQPSIKFSSPIEIQLLRDASPELGNGTTADSIQFWFFTK TTSGTNRIDNYIRLNTRLTRIEGSCSVPSRTVELQPARVGRLTGVGATAGERSFQINI DDCPKGYNKILYRLKPVGDTVGTSAGVLPLSAESTAKGVRIRVTDSAGAPVAFDTSNR IDAYSKDTGGSFSIPMRVSYVQTEAKVTPGTVNGAMSVLMEYQ" sig_peptide 12674..12772 /locus_tag="Rpic_0010" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 33" gene complement(13662..14021) /locus_tag="Rpic_0011" /db_xref="GeneID:6289279" CDS complement(13662..14021) /locus_tag="Rpic_0011" /note="KEGG: bch:Bcen2424_2530 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897610.1" /db_xref="GI:187927123" /db_xref="GeneID:6289279" /translation="MKRVIALLTILTAAWAHASDSVKPVSPGTKSGTSTSGNKSGGGG DSGGRTSGGGTDSGGKAHDPATRVDISGNRPERPGGYNSKGESLERPKDNAGPIRSGG GGGPALGPKPKETKDGS" sig_peptide complement(13662..13718) /locus_tag="Rpic_0011" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.764 at residue 19" gene 14642..24747 /locus_tag="Rpic_0012" /pseudo /db_xref="GeneID:6289280" gene 25869..27560 /locus_tag="Rpic_0014" /db_xref="GeneID:6289281" CDS 25869..27560 /locus_tag="Rpic_0014" /note="PFAM: Hemolysin activator HlyB domain protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: rso:RSc1779 probable activation/secretion signal peptide protein" /codon_start=1 /transl_table=11 /product="Polypeptide-transport-associated domain protein ShlB-type" /protein_id="YP_001897611.1" /db_xref="GI:187927124" /db_xref="InterPro:IPR005565" /db_xref="InterPro:IPR013686" /db_xref="GeneID:6289281" /translation="MRTTFLLRTLLASGMTSSVFAQVAPAPLTGPGPDVQRLQEQQAE QARERANARPDVFTPPAPAQVISLSALPKETPCFQINGITLEDNVFWWLPDLLKPVNG QCVGKQGLEAIELQANNALIERGYVTSRVLIPKQNLAGGTLQLKVLAGRIGAIRNASD NNIGWARMVLLAGPGDLLNQRDLDQALESIRRLPGQSQTSFDIVPGERVGESDIVLKP GTDKRWHASLSADNTGLKSTGKYQMSGSLVIDSPLHLYDQLSISASSNTDRGSTAAGT RSYSINWSVPVGYATLFVGANRSRYNQTVAGFEEPIVYSGNSSEVNAGISGVLHRDAT SRTGAQFKLFRKINRNYLEDTEIAVQRRDVVGYEASMSHRHYLGPVVLDGGFAWRETL PDHSNVPGVVVGDPGYGGRSQVETANASLYWPFKLANQMFEYTSNWSIQHARTRVLPS DYFTIGNRYTVRGFDGQLTLAAEDGWFWRNELAWRVAGQAIYAGVDMGKVHGPSAEFL LGDKLVGAVVGVRGRVPSGPYMAFNYDVSFGWPLYRPAGFRSQQPAVMAQVGVEF" sig_peptide 25869..25934 /locus_tag="Rpic_0014" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.937 at residue 22" gene complement(27822..28013) /locus_tag="Rpic_0015" /db_xref="GeneID:6287736" CDS complement(27822..28013) /locus_tag="Rpic_0015" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897612.1" /db_xref="GI:187927125" /db_xref="GeneID:6287736" /translation="MATTPTFYPYSPEPHRGIAQSTPVAQDVIKLAIDADEAEAWFSE THACQRLRELFPAAIAFFV" gene 28338..29102 /locus_tag="Rpic_0016" /db_xref="GeneID:6287737" CDS 28338..29102 /locus_tag="Rpic_0016" /note="PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rso:RSc2102 probable transcription regulator protein" /codon_start=1 /transl_table=11 /product="GntR domain protein" /protein_id="YP_001897613.1" /db_xref="GI:187927126" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011711" /db_xref="GeneID:6287737" /translation="MHSIPSSVAQALQQRILSGEYPSGSRLPPQRELAESLGVSRASL REALTVLETLGLVDILPSRGVVVRGQKFGAEGASAERMHRPFATPALGTLSPRQLIEL RLVLEPGWTALAAARMHAAGLRHLQWLQQQLAHALERNDLLSAAEADLHFHLLLAQLS GNPGLMAMAGQLEHAIGHSLRLPFARNGADDHPAHEHDAIVQAIAAGDVAASAEAMRA HLLSAARRSGIDLTAPPATPEPMQHEPASFRLASIS" gene 29130..29957 /locus_tag="Rpic_0017" /db_xref="GeneID:6287738" CDS 29130..29957 /locus_tag="Rpic_0017" /note="PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: rso:RSc2103 probable amino-acid-binding periplasmic (PBP) ABC transporter protein" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 3" /protein_id="YP_001897614.1" /db_xref="GI:187927127" /db_xref="InterPro:IPR001320" /db_xref="InterPro:IPR001638" /db_xref="InterPro:IPR006311" /db_xref="GeneID:6287738" /translation="MTRITARHASRPTSRRFFLHAVMAASAVAALLPGRPAHADALAN IQKAGVIRVAIPNDFPPFGSLGPDLKLQGYDIDMAGLIAKELGVKAELVPVTSTNRIP FLTTGKVDVVISSLGKNAERAKVIDFTQAYAPFPKSVYGPKDVSIKGPADLAGKTIGV TRGSTEDLALSAVAPASATIKRYEDNNATAQSYLIGQVQLVTVGNIVANAVNERTKLR QLDLKFPVEDTPCYVGVAKGEPALLDKVNTVITKLKTDGRLNDLSQRWIKMPLPAKL" sig_peptide 29130..29249 /locus_tag="Rpic_0017" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 40" gene 30115..30849 /locus_tag="Rpic_0018" /db_xref="GeneID:6287739" CDS 30115..30849 /locus_tag="Rpic_0018" /note="TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc2104 probable amino-acid transmembrane ABC transporter protein" /codon_start=1 /transl_table=11 /product="polar amino acid ABC transporter, inner membrane subunit" /protein_id="YP_001897615.1" /db_xref="GI:187927128" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:6287739" /translation="MAYQFDFGAVFSYSGQLAQGAAFTLALTAAGAVAGGAIGIAGGV CRAWRIAPFNALFKVYVEGIRNTPFLVQLMFVFFGLPSLGVQINEWQAALLTAVVNLG AYITEIVRAGIQETPRGQLEAANALAMSRWAVFRHVVLRPALQKVWPALSSQIVIVML GTSVVSQIAAQDLTFAANFIQSRNFRAFETYLVVTALYFALALLLRQLLAWIGQRFVV GRRAPAASAAPLAATATAAASVGDAA" gene 30846..31499 /locus_tag="Rpic_0019" /db_xref="GeneID:6287367" CDS 30846..31499 /locus_tag="Rpic_0019" /note="TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc2105 probable amino-acid transmembrane ABC transporter protein" /codon_start=1 /transl_table=11 /product="polar amino acid ABC transporter, inner membrane subunit" /protein_id="YP_001897616.1" /db_xref="GI:187927129" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:6287367" /translation="MIADIPLLPILLKLGEGLLATLMLSLMAFALGGTAGLVVLFARV GRNATLQRVSKAYIQLFQNTPLLMQMFIVFFGASMAGFEMSPWTAAAIGLTLYTSAYL AEVWRGCVEAIPRGQWEASSSLAMGYFQQMRHVVLPQAVRLSIAPTVGFSVQIVKGTA VASIIGFEDLSKLGSVLANATFQPFLIYGLVAIGYFALCWPLSLYASHLEKKLYAAR" sig_peptide 30846..30944 /locus_tag="Rpic_0019" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.830) with cleavage site probability 0.441 at residue 33" gene 31486..32223 /locus_tag="Rpic_0020" /db_xref="GeneID:6287368" CDS 31486..32223 /locus_tag="Rpic_0020" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc2106 probable amino-acid ATP-binding ABC transporter protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_001897617.1" /db_xref="GI:187927130" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:6287368" /translation="MPLVDLCAVHKHYGNNHVLKGVDLRVEAGQVVAIIGRSGSGKST LLRSINGLEAIDDGQIVVDNAVLQGSQATPARLRALRLNVGMVFQQFNLFPHLTAGQN VALSPVVVKGMKKADANDLARQMLVKVGLAEKFDAYPDQLSGGQQQRVAIARALAMQP KVLLCDEITSALDPELVNEVLAVVKQLAAEGMTLIMVTHEMRFARDVGDQLVFMHQGL IHESGPAKEVFASPKTAELAAFIGAVQ" gene 32307..33263 /locus_tag="Rpic_0021" /db_xref="GeneID:6287369" CDS 32307..33263 /locus_tag="Rpic_0021" /note="PFAM: protein of unknown function UPF0187; KEGG: rso:RSc3414 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="protein of unknown function UPF0187" /protein_id="YP_001897618.1" /db_xref="GI:187927131" /db_xref="InterPro:IPR007913" /db_xref="GeneID:6287369" /translation="MVVRPHLHWFRMLLAWRGSVLPQLLPRLFLIFFVSLVAIAVHAH LLPVSVNLSTTPFSLVGIALAVFLGFRNNASYDRYWEARKLWGQLLNTARSLTRQALT LPRGDGTNGPNGPNSGVTDADVREFAQVLGALPHALRHQLRHTDAREDLATRLPAALL ERVMAARYRPIVIVQWMGEWVQRRAQAGALDGYAALAFDRNLNELSNSIGGCERIAGT PLPFAYSVMIHRTVYFFCAALPFGLVESIGSFTPVFAVFVAYTFMAHEAIASQLEDPF GTEDNDLALNALSNTIEDAVLDILGEPSPLPRAGVRRGVIFD" sig_peptide 32307..32438 /locus_tag="Rpic_0021" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.715) with cleavage site probability 0.709 at residue 44" gene complement(33286..33957) /locus_tag="Rpic_0022" /db_xref="GeneID:6287370" CDS complement(33286..33957) /locus_tag="Rpic_0022" /note="KEGG: reu:Reut_B4310 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897619.1" /db_xref="GI:187927132" /db_xref="GeneID:6287370" /translation="MPLISRAHVRLSRLRFPFAVRVQSEQGTVCLRDANGRREVRPGN PFVVPAFAHFGCEIPGTVWQPCAITFKAVPDAGCPRMAAIQHDKPWARAFATLVFEHP VQAWNAALLSHCWQACPRQVRARLFAEGEALHALVREQRAAWALYRLAHTCGNDEPEA EALHALARRAGLRNARTLNETCASLFGVELAALLAGNADSVSGLVHGSTAPLERWAQP LAMAL" gene complement(34060..34758) /locus_tag="Rpic_0023" /db_xref="GeneID:6287371" CDS complement(34060..34758) /locus_tag="Rpic_0023" /note="PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: reh:H16_B1147 cNMP regulatory protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, Crp/Fnr family" /protein_id="YP_001897620.1" /db_xref="GI:187927133" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="InterPro:IPR012318" /db_xref="GeneID:6287371" /translation="MTTPRAPTPATQLQGHAWYTALAPEHQALAGRETLLQAFEPGAF IARRGEPSRYWIGVDTGLIKLAVYTSDGRGCTFSGVPAGGWCGEGSVIKREDRRYDVI AIRASHVLLVPEPVFNTLLAQSLPFASFVVRQLNERMGQFIATVQNDRLLSADARVAQ AIAQLFHPALYPRTSTVLELSQEEIGLLTGLSRQRVNRALQRLAEGGMIALSYQTIRV TDLERLRLFGLSEL" gene 34952..36586 /locus_tag="Rpic_0024" /db_xref="GeneID:6288262" CDS 34952..36586 /locus_tag="Rpic_0024" /note="activates fatty acids by binding to coenzyme A" /codon_start=1 /transl_table=11 /product="acyl-CoA synthetase" /protein_id="YP_001897621.1" /db_xref="GI:187927134" /db_xref="InterPro:IPR000873" /db_xref="GeneID:6288262" /translation="MPTDFDSGLARNAANFVPLTPIEFLARAADVYGDRLAIVHGPVR QNWRDTYERARRLASALSLAGVGRGDTVAALLPNTPAMVEAHFGVPMAGGVLNALNIR LDAANLVFMLRHGEARVLLADTEFADLARQMALEIPGLKVIAVNDALGPQAEPFGDTD YETFLASGDPHYAWQLPADEWDAIALNYTSGTTGDPKGVVYHHRGAAINAVSNILEWD LPKHPVYLWTLPMFHCNGWCFPWTIAARAGVNVCLRKFEPKLVFDLMRDEGVTHYCAA PIVHTALVNAPPSWREGLRGPVRGMVAGAPPPAAVLAQMEAMGFELTHVYGLTEVYGP AAVCAEQDEWRTLPEHDRATMKARQGVRYHLQSQVAVLNPETMQPVPADGETIGEIMF RGNICMKGYLKNEKATREAFAGGWFHTGDLGVCMPDGYIKIKDRSKDIIISGGENISS VEVEDALYRHPAVLAAAVVAQPDAKWGETPCAFVELKDGATATAEDLIAHCKTLLAGF KVPKAVFFGPLPKTSTGKIQKYELRRKVKSTSAIDV" gene complement(36686..38254) /locus_tag="Rpic_0025" /db_xref="GeneID:6288263" CDS complement(36686..38254) /locus_tag="Rpic_0025" /note="TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: rso:RSc0127 putative hemagglutinin-related protein" /codon_start=1 /transl_table=11 /product="40-residue YVTN family beta-propeller repeat protein" /protein_id="YP_001897622.1" /db_xref="GI:187927135" /db_xref="InterPro:IPR011964" /db_xref="GeneID:6288263" /translation="MAELLIAKAQRSSSAYTQPTPAPIPPDAPRHARGMHGAALVMAA ALSLGLSACGGGEDAGTTTPPTNNNTPAPTPSPAPTPAPKPTPSPSPAPTPTPAPTPA PAPATYSVGGTVSGLTSGKSVTLLDNGGDAVVVNANGSFNFPTKLAQGKPYAATVGTR PSGENCTVTNGSGTVGTSNVTTIAVACTPKPLFGYAVNSNDGTISAFTLDATTGMPTA VGTAVAVGAGPLSLTIDPAGKFVYVANANANTVTTLSINADTGLLTVVGSATPTGVQP YSIARTPNGKFAYTTNYGDNTLSAFSVNTGTGALTALAPITAGANPYTVAINSAGTFA YVVNANSGATPGTAMAFAVNNTTGALTQVGTTVNTGNTPQFIAVNSAGTYAYVTNAAD NTINVYSISNTGALTASGTPVAAGTNPYYIAIAPSGGFMYVTNVLANTVSVFSINPSN GALTLVDTTPTGNAPVTVLVNPAGTFAYVVNAVDNSVSAYSINSTTGKLTAVASGSAA TGNIPRGMAIVAVP" gene 38470..39015 /locus_tag="Rpic_0026" /db_xref="GeneID:6288264" CDS 38470..39015 /locus_tag="Rpic_0026" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: bte:BTH_II0494 acetyltransferase, GNAT family" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_001897623.1" /db_xref="GI:187927136" /db_xref="InterPro:IPR000182" /db_xref="GeneID:6288264" /translation="MSNANPNSNNTVLIRQLSSVDAADVADYRAIRLAALKDSPDAFG STYEAEVGLSTEAFAERLATTIVLGAYAGTGSDARIVGMVGFKQQTIAKLAHKGFVWG FYVAPAARGRGVGVALVERIVAAATGLVQQLTLSVVRGNDAALALYERCGFETYGVEP RALKSTTGYADEVLMVRFLHG" gene complement(39109..39582) /locus_tag="Rpic_0027" /db_xref="GeneID:6288265" CDS complement(39109..39582) /locus_tag="Rpic_0027" /note="TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bte:BTH_I0996 carboxymuconolactone decarboxylase family protein" /codon_start=1 /transl_table=11 /product="alkylhydroperoxidase like protein, AhpD family" /protein_id="YP_001897624.1" /db_xref="GI:187927137" /db_xref="InterPro:IPR003779" /db_xref="InterPro:IPR004675" /db_xref="GeneID:6288265" /translation="MSQAPRIAYFQLAPKAFNNLLNLSNGLRRDLLGARLVDLVLLRV SQINGCAFCIDMHWADLIKMGEDPRHLNAVAGWREAPFFTERERGAALRWAELVTNTP HSDASDEEFARLREHFSDEEIAELSFVIVTINSWNLLNVSLRNPVPLKAPHVAAA" gene complement(39715..40623) /locus_tag="Rpic_0028" /db_xref="GeneID:6288266" CDS complement(39715..40623) /locus_tag="Rpic_0028" /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bte:BTH_I0997 RNA polymerase sigma-70 factor, ECF family" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma-24 subunit, ECF subfamily" /protein_id="YP_001897625.1" /db_xref="GI:187927138" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR007630" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="InterPro:IPR014303" /db_xref="GeneID:6288266" /translation="MTKPSPDRTTRTDSEDTTFTAVRPRLFAIAYRMLGSRADAEDVL QDAWMRWHQTDQTALQSAEAWLVTVVTRLSIDRLRAAKTEREAYVGWWLPEPLVEPES HAPTPETAVELAGDVSMALLWVLERLSPEERAAFLMRQVFDQDYSEIAALLGKTEAAC RQMVHRASDRVQQERPRFDVAPDAHRDLLERFAQASRTGQRDAIRALLADDAQLVGDG GGKVPSFTRIIQDAGQITKIYCELVRAMGDVRYVHARVNGEPGLLRYVDGKLESAQSF VIENGQIVAIYVVRNPDKLAHIGIGA" gene complement(40695..42893) /locus_tag="Rpic_0029" /db_xref="GeneID:6289740" CDS complement(40695..42893) /locus_tag="Rpic_0029" /note="TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bvi:Bcep1808_3441 PAS/PAC sensor hybrid histidine kinase" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor hybrid histidine kinase" /protein_id="YP_001897626.1" /db_xref="GI:187927139" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000700" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:6289740" /translation="MPFLAHHHDCLGWNGEMAQRVLAFDWASTELGPIQDWSPSLRAA VHMVLACPVPLVMLWGRHGYMVYNDAYAVFAGGRHPYLLGCPVELGWPEVADFNRHVM DVCLGGGTLSYRDKELVLLRNGRPEDVWMDLYYSPLPDDTGRPAGVLAIVVETTERVQ TERERQAAEQALRQLTETLEQRVADALSARAEVEAQLRQAQKMEAIGNLTGGVAHDFN NVLQVIAGNLQMLSVEAPNNTRVQHRIAAATRAVQRGATLAAQLLAFARRQQLSPAVV NPTRLVQGMSEMLHRALGEAIKVETHLAADLWNVQADRNQLENALLNLAINARDAMRG GGMLTIAANNVTLDNTQADVRDQLTPGDYLVFSVTDTGVGMPPEVVEHAFEPFFTTKP DGHGTGLGLSMVFGFVKQSGGHIAIDSTVGQGTTVQLYFPRCTEAAPDDAVELRDTIV TPMGGRETILVVEDDTDVRLTAVDMLTQLGYRVLTAANGQAALDLMNSGTSIDLLFTD VIMPGPIKGSELSIRAAQRVPPLPVLLVSGYPRDEVQHDGRLPPGVTLLGKPYRRDDL ARMVRNVLTASRTAQAQAQSASPSAGPAVATDASQPPAVLLVEDDTASREAMQEVLTT FGLQCVAAVNAEDALALARTRSVQVLLTDLTLPGQSGANLARTLLRMQPQLQVLLMSG YGTEAEIGEPIAGARLLGKPIDLMTLQQALAPWLGATVRAADTQNVTNAA" gene 43133..43747 /locus_tag="Rpic_0030" /db_xref="GeneID:6289741" CDS 43133..43747 /locus_tag="Rpic_0030" /note="PFAM: Glutathione S-transferase domain; KEGG: rso:RSc0129 hypothetical protein" /codon_start=1 /transl_table=11 /product="Glutathione S-transferase domain" /protein_id="YP_001897627.1" /db_xref="GI:187927140" /db_xref="InterPro:IPR004045" /db_xref="GeneID:6289741" /translation="MKLIGMLDSPYVRRTAISLKLLGLPFEHAAVSVFRHFDQFSAIN PVVKAPTLVCDDGTVLIDSTLIIDYAETLAGRSLMPAAIAERQHALRVIGLALAACEK AVQIVYEHNLRPSEKVHGPWVERVHSQLLAAVEALEAEWKDAPLPVEENELTQAGVTV AVAWAFIQLMVADRVPAADYPRLVAYSVAAEQLGAFRELPMDAV" gene complement(43755..44903) /locus_tag="Rpic_0031" /db_xref="GeneID:6289742" CDS complement(43755..44903) /locus_tag="Rpic_0031" /note="PFAM: CBS domain containing protein; HPP family protein?; KEGG: rso:RSc0130 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="CBS domain containing membrane protein" /protein_id="YP_001897628.1" /db_xref="GI:187927141" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR007065" /db_xref="GeneID:6289742" /translation="MSSSSLHPALRRWLHSFIPAPVTVRWSERVRSAVGALVGILFTG TMMKMVPGASTLIPLLVAPMGASAVLLFAVPASPLAQPWSIIGGNLVAATVGVTFALL VNDPVIASALAISAAIAGMFALRCVHPPSGAVALTAVIGGPAVHALGYRFVLEPILIQ SALLLVGALVYHAATGHRYPHAQRLPAAERPPTAAGFTRADIVAALRRQSELLDIDPE DIEAVLREMQLQAYTRTFQALTCADIMTTPVVTVLAGTSIPRALELLRQHGFKALPVV DEGRRVVGIVTRVDLLGLAPADMRQTLRRWFSIGALTPPRVADHMKTRVQTIAANAPM SDLVPMFASAGHHHIPVLDADGRLAGIVTESDLVGGLYRQANIEPQAA" gene 45136..45333 /locus_tag="Rpic_0032" /db_xref="GeneID:6289743" CDS 45136..45333 /locus_tag="Rpic_0032" /note="KEGG: rso:RSc0131 probable lipoprotein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897629.1" /db_xref="GI:187927142" /db_xref="GeneID:6289743" /translation="MAFTARPAFSRPRLCSSLVALFGALALTACGGDDTTSSTPAATT QAIPAPPADPGFVDTAAVPGA" sig_peptide 45136..45231 /locus_tag="Rpic_0032" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.807 at residue 32" gene 45347..46393 /locus_tag="Rpic_0033" /db_xref="GeneID:6289744" CDS 45347..46393 /locus_tag="Rpic_0033" /note="TIGRFAM: autotransporter-associated beta strand repeat protein; KEGG: rso:RSc0131 probable lipoprotein" /codon_start=1 /transl_table=11 /product="autotransporter-associated beta strand repeat protein" /protein_id="YP_001897630.1" /db_xref="GI:187927143" /db_xref="InterPro:IPR001011" /db_xref="InterPro:IPR013425" /db_xref="GeneID:6289744" /translation="MLARGQELGENRILAGMHSPLDVMSGRMIGIAAAAANLVDPANA ALKAAAFTQAHTALMAQTGTDATTFPALAQSGTPATDRFADYATNQANFTRRMTFGFS QISATTLAPVVPKGAEVLLETRFPYLSADQRRVVLKTTELASGYPVLDDAEGWGRLNL FAAADDYGAFNGNVIVSMDATQGGFNAADTWRNAISGAGKLTLQGTGRLRLAGANTYT GGTQVASGVLEADSANAFGTGDVYVGAGTLAVNAPAAVAIAGKFTQLQGTTLDLAIGP NGQGKLSVAGLTTIAGGTLHLKFVNGYTPKVGDTIAVVDGAGSNRQFSTVVVDGFQAT AIYTATGIQVHLDA" gene complement(46398..47237) /locus_tag="Rpic_0034" /db_xref="GeneID:6287392" CDS complement(46398..47237) /locus_tag="Rpic_0034" /note="PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: rso:RSc0132 probable transcription regulator protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AraC family" /protein_id="YP_001897631.1" /db_xref="GI:187927144" /db_xref="InterPro:IPR000005" /db_xref="InterPro:IPR010499" /db_xref="GeneID:6287392" /translation="MLAHIDAHLEDTLDVDGLAGVAAFSRHHFHRQFSLLFGMNVGRY VQLLRLKRAAHQLAYRDDARITDIALACGYEGPEAFARAFRRQAGQSPSAFRAAPQWT PWATDLQALRALRSQHMPAQPQTQSVEIVEREAVAVAAIEHRGDPARLSETLRTFIVW RREHRLHPSVSATYNVVYDNPDDVPPEAFRMDICAATRAPIAPNAAGVAGKTLAGGRY AVLRHTGSDDTLGQSVAYLYADWLPASGEELRDAPLLFQRVRFYPDVPEHEAVTDVLL PLR" gene 47549..47842 /locus_tag="Rpic_0035" /db_xref="GeneID:6287393" CDS 47549..47842 /locus_tag="Rpic_0035" /note="PFAM: GYD family protein; KEGG: rso:RSc0133 hypothetical protein" /codon_start=1 /transl_table=11 /product="GYD family protein" /protein_id="YP_001897632.1" /db_xref="GI:187927145" /db_xref="InterPro:IPR014845" /db_xref="GeneID:6287393" /translation="MATFLALLNFTDQGIRSVKDTTKRAAAARELAKAAGIDMKAIYW TLGQYDLAVICEGPDDAAMTAFGLALAAAGNVRSQTLRAFSADEMNGILSKMP" gene complement(47913..49103) /locus_tag="Rpic_0036" /db_xref="GeneID:6287394" CDS complement(47913..49103) /locus_tag="Rpic_0036" /EC_number="2.5.1.6" /note="catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine synthetase" /protein_id="YP_001897633.1" /db_xref="GI:187927146" /db_xref="InterPro:IPR002133" /db_xref="GeneID:6287394" /translation="MSNDFLFTSESVSEGHPDKVADQISDAILDAILAQDKYARVAAE TLCNTGLVVLAGEITTTANVDYIHVARETIKRIGYDNTEYGIDYKGCAVLVAYDKQSP DIAQGVDRASDDYLNQGAGDQGLMFGYACDETPELMPFPIYYAHRLVERQSQLRRDGR LPWLRPDAKSQVTVRYVDGKPHSVDTVVLSTQHAPEMSQEAIREAVIEEIIKPVLPSH MLAETKYLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRS AAYAARYVAKNVVAAGLARQCQVQVSYAIGVARPINITVYTEGTGVIPDEQIAKLVQE HFDLRPKGIVQMLDLLRPVYEKTAAYGHFGREEPEFSWEATDKVLLLREAAGLAGEPA KAFA" gene 49343..50191 /locus_tag="Rpic_0037" /db_xref="GeneID:6287395" CDS 49343..50191 /locus_tag="Rpic_0037" /note="Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA" /codon_start=1 /transl_table=11 /product="lipid A biosynthesis lauroyl acyltransferase" /protein_id="YP_001897634.1" /db_xref="GI:187927147" /db_xref="InterPro:IPR004960" /db_xref="GeneID:6287395" /translation="MTFLFWLFSRLPLSALQALGGWLGALAAKVPGRYHDRLIANFRH AYPDVTPAMLKEAGRSAGRMVFEMPYFWVRKNGADVAPHLFDVCRTVVERALADGRGL IFLTPHLGCFEVLPQAYAREHPVTSLFKPPRKASLRGWIETMRAGPNMQMAPADPRGV RMLVRALKRGEAVGILPDQTPTAGEGVWAPFFGKPAYTMTLVHRLHRLTGAPVVALFA ERLPRGAGYRLHLEEIGDLPEDATQAATRINAAVERLIAVAPTQYLWGYNRYKHPKGA DAPPAA" sig_peptide 49343..49426 /locus_tag="Rpic_0037" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.975) with cleavage site probability 0.800 at residue 28" gene 50205..51098 /locus_tag="Rpic_0038" /db_xref="GeneID:6287396" CDS 50205..51098 /locus_tag="Rpic_0038" /note="Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA" /codon_start=1 /transl_table=11 /product="lipid A biosynthesis lauroyl acyltransferase" /protein_id="YP_001897635.1" /db_xref="GI:187927148" /db_xref="InterPro:IPR004960" /db_xref="GeneID:6287396" /translation="MERLSAKLGLGFLWLLSFLPYGFVARFGEGLGGLLYRIPNGRRR VVLANLRACFPEKSEAEREAMAHEVFRKVFRSFAERSFAWFASEKRLMRVVKIDDQAN LPALHGQPHILVTLHLSGVEIGALALTDYLRKHVGNAGCSLYTRMANPVLDDAIKALR SRFGATMVSRNENIRQIMRTIKRGEALQLISDMDFGERDSEFVPFFGVPALTLNAIPR MASMTGAKVVPMYTEILPNYEGYALRILPAWENYPTGDLTADTRRMNAFFEDAIRPRI TEYYWVHKRFKHRPEGMPGIY" gene 51188..52066 /gene="dapF" /locus_tag="Rpic_0039" /db_xref="GeneID:6289735" CDS 51188..52066 /gene="dapF" /locus_tag="Rpic_0039" /EC_number="5.1.1.7" /note="involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate" /codon_start=1 /transl_table=11 /product="diaminopimelate epimerase" /protein_id="YP_001897636.1" /db_xref="GI:187927149" /db_xref="InterPro:IPR001653" /db_xref="GeneID:6289735" /translation="MKLHFTKMHGAGNDFVVLDGIQTPIDFTPEQWAAIADRHFGVGA DQLLLVERSTRPDVDFRYRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTVRVEVM NGIATLTMQDDGQVTVDMGAPVFEAARLPFLPEGLPTRTQGDDTQHALQINGRTEWLS TVSMGNPHAVQIVDDTEAFPVLEDGPLIESHAVFPRRVNAGFMQIVDRHSVRLRVYER GAGETLACGTGACAAVVAGIRRGLLDSPVKVATHGGDLTIAWAGDGQPVMMTGPATTV FEGTLDLDALKLTAAH" gene 52114..52941 /locus_tag="Rpic_0040" /db_xref="GeneID:6289736" CDS 52114..52941 /locus_tag="Rpic_0040" /note="PFAM: protein of unknown function DUF344; KEGG: rso:RSc0138 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF344" /protein_id="YP_001897637.1" /db_xref="GI:187927150" /db_xref="InterPro:IPR005660" /db_xref="GeneID:6289736" /translation="MASNGKNPIDDWYFDGSSKFKIAKFDPAAKPCTTGSKAGDLARL AELSARIEALQDIFYAEHRRKLLVVLQGMDTAGKDGTVRTVFRALDPLGLRVVGFKVP TPLELAHDFLWRIHAEVPAAGEIVIFNRSHYEDVLVTRVHGDIDAAESKRRYAHINAF EQMLTETDTTIVKCFLHISKEEQRDRLQMRIDDPQKHWKLGMADIEERKFWEDYMAAY EDAINATATPHAPWHIIPANSKSHRSLMVAEILLQVMERLQPEYPVGNPAFLGLKIE" gene complement(53067..53744) /gene="pyrE" /locus_tag="Rpic_0041" /db_xref="GeneID:6289737" CDS complement(53067..53744) /gene="pyrE" /locus_tag="Rpic_0041" /EC_number="2.4.2.10" /note="involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate" /codon_start=1 /transl_table=11 /product="orotate phosphoribosyltransferase" /protein_id="YP_001897638.1" /db_xref="GI:187927151" /db_xref="InterPro:IPR000836" /db_xref="InterPro:IPR002375" /db_xref="InterPro:IPR004467" /db_xref="GeneID:6289737" /translation="MSQNSELRQSFIRFAVEAGVLSFGEFVTKAGRTSPYFFNAGKFA DGALLGQVAQFYAKTLLDSGVEFDMLFGPAYKGITLASATAVALAGLGRNVGFAYNRK EAKDHGEGGSLVGAKLQGRVVIVDDVISAGTSVRESVELIRAAGATPAAVLILMDRME RSGNAVDIGERSAVQDVQAQYGMPVVSIANLDDLLGYLDNAGDPALAGYREKAAAYRD KYGVSAI" gene 53778..54563 /locus_tag="Rpic_0042" /db_xref="GeneID:6289738" CDS 53778..54563 /locus_tag="Rpic_0042" /EC_number="4.2.99.18" /note="KEGG: rso:RSc0140 putative exodeoxyribonuclease III protein; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease III Xth" /protein_id="YP_001897639.1" /db_xref="GI:187927152" /db_xref="InterPro:IPR000097" /db_xref="InterPro:IPR004808" /db_xref="InterPro:IPR005135" /db_xref="GeneID:6289738" /translation="MLRIISANLNGVRSAASKGFFDWMGKQDADFVCVQELKCAQDDM TPEFLAPHGYHGVFQHAVKKGYSGAGLYTRHKPDEVIVGFDNGEFDAEGRYVEARYGK LSVISVYVPSGSSGEERQQAKFRFMDLFMEHLKDLRHEKGREVVLCGDVNIVHKEIDI KNWKGNQKNSGCLPEERAWLTKLFDEVGYVDVFRTLDQRPEQYTWWSNRGQAYAKNVG WRIDYQIATPGIAATARRASIFKDIKFSDHAPLTIDYDTKPHW" gene 54691..55704 /locus_tag="Rpic_0043" /db_xref="GeneID:6289739" CDS 54691..55704 /locus_tag="Rpic_0043" /EC_number="1.2.1.38" /note="catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis" /codon_start=1 /transl_table=11 /product="N-acetyl-gamma-glutamyl-phosphate reductase" /protein_id="YP_001897640.1" /db_xref="GI:187927153" /db_xref="InterPro:IPR000534" /db_xref="InterPro:IPR000706" /db_xref="InterPro:IPR010136" /db_xref="GeneID:6289739" /translation="MAFKVFVDGQEGTTGLRLLDYLSQRDDIELLRIAEDKRKDSAER AKFLNAADVAFLCLPDVASREAVSLVNNPNTCIIDASTAFRTSDDWVYGLPELAQGQR ERLRNTKRIAVPGCHASAFVLLMRPLVDAGIVPADYPVTAFSLTGYSGGGKQMIADYL AANNPKLDSPRPYALALAHKHLPEMRVQSKLSLAPIFTPVVGNFLKGLAVTIGLHPQH LARKASPADIARVLADYYQGEQFIRVAPADNVATLDNGFFDVQGANDTNRADLFVFGS DERMVVTARLDNLGKGAAGAAVQCMNVHLGVDEATSLHVEAPVPAAGAEHTVREAAPG FAS" gene complement(55777..56685) /locus_tag="Rpic_0044" /db_xref="GeneID:6287296" CDS complement(55777..56685) /locus_tag="Rpic_0044" /note="PFAM: band 7 protein; KEGG: rso:RSc0145 putative transmembrane protein" /codon_start=1 /transl_table=11 /product="band 7 protein" /protein_id="YP_001897641.1" /db_xref="GI:187927154" /db_xref="InterPro:IPR000163" /db_xref="InterPro:IPR001107" /db_xref="GeneID:6287296" /translation="MPEVTASKLPVKLLALVFGAVAALVIGRTFLLNWQIIPPGYTGI KINRLVDRGITHENVVTGFVFYNPVQTAIIQYPTYVQRVIWTQDVNEGRALNEELTFN TKDAVPVNVDVAVSYQLDREKVPAFYTNFRADRIETFTHGYLRDTARNVIVAMGSEYN FDDVNGGKKEEFVARLTKELDTRLAPLGVSIKQFGIVGSLRPPRALLDAVSAKTKAIQ DAIRTENEVRSAQAEAKKKVAIAEGEAAANHALASSLDDRLLAWERLKLERAAIEKWN GVTPSVMAGGNGGGMFFNIPAGAQSK" gene complement(56994..57794) /locus_tag="Rpic_0045" /db_xref="GeneID:6287297" CDS complement(56994..57794) /locus_tag="Rpic_0045" /note="PFAM: protein of unknown function DUF218; KEGG: rso:RSc0146 probable lipoprotein transmembrane" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF218" /protein_id="YP_001897642.1" /db_xref="GI:187927155" /db_xref="InterPro:IPR003848" /db_xref="GeneID:6287297" /translation="MGAHLRVCGANLEEPVSLTILCVLVIVATVCAARGRRRAARGLA VFSGVLVIAIGCGPVPAWLLDSLEKPFENEPHVQWGARNAIVLLGAGTFRVGDSVEPG LFSYPRLVETTQLYQACRKSDGDCKILVSGGDARHHGSPEATVYQRELVRLGVAKDDV LIEPQSMNTWQNAQFSRTVLAQYGADRTVLVSSAIHLRRSLLYFTHFGMAPVPVRADD LQAAASPLPMAYNFALTDFALHEWIGIARYHMYNALGWNPGRINPGDA" gene complement(58107..59051) /locus_tag="Rpic_0046" /db_xref="GeneID:6287298" CDS complement(58107..59051) /locus_tag="Rpic_0046" /note="PFAM: peptidase M48 Ste24p; KEGG: rso:RSc0153 hypothetical signal peptide protein" /codon_start=1 /transl_table=11 /product="peptidase M48 Ste24p" /protein_id="YP_001897643.1" /db_xref="GI:187927156" /db_xref="InterPro:IPR001915" /db_xref="InterPro:IPR006025" /db_xref="GeneID:6287298" /translation="MPRVTRSLLTAIGLALSAWATAMDGPLPVPADGVKLEAPTTTSP NIRLVIPAEEIDKRALAEYQGIIDNAAHEGALAPDNVPDLIRIRGIVKRLTPQAPRWN PDATHWQWDVNLIGSSQVNAFCMPGGKIAVFSGLLEQFKLTDDELAMALGHEIAHALR EHARARAGQREITNLGANVISQLFGFGNRGDTDLGEGAKMHLLAFSRAEETEADLVGM DIASRAGYDPRAALTLWQKMGSIGGTEQKQFLSTHPSGRTRMAVLSRHLPETLTLFAD ARHMTMAKLPEYRSNMQYLGAAPVDNGDEAPMRPMRRR" sig_peptide complement(58107..58169) /locus_tag="Rpic_0046" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.536 at residue 21" gene 59149..60438 /gene="ampG" /locus_tag="Rpic_0047" /db_xref="GeneID:6287299" CDS 59149..60438 /gene="ampG" /locus_tag="Rpic_0047" /note="PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc0154 muropeptide transporter" /codon_start=1 /transl_table=11 /product="muropeptide transporter" /protein_id="YP_001897644.1" /db_xref="GI:187927157" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:6287299" /translation="MTFHDYLDIFRNRRIGAMLLLGFASGLPLALTSGTLQAWMTVEG LDIRTIGLFSLVGQAYIFKFLWAPLMDRFTPPLMGRRRGWLVLTQAGLVASIAAMAFT PPHAALWALAGLAVLVAFLSASQDIVFDAYSTDVLHTSERGVGAAVKVLGYRLAMLVS GGLALYLADRVMGWSNMYLLMAGLMALGIITTLWSPEPEVSARPPRSLQEAVVGPLRD FFSRRGAWALLGLIVLYKLGDAFAGSLSTTFLIRGVGFSAGEVGIVNKTLGLAATIVG ALYGGTLMVRLGLVRALLLFGVLQAVSNLGYWVLAVTPQHLWTMAVAIGIENICGGMG TAAFVALLMALCNRSFSATQYALLSALASIGRVYVGPTSGYLVEAYGWPAFYLMTVVF AFPGLALLWWMRGTIGRYEAEQNERALEAKAAKAASA" sig_peptide 59149..59265 /gene="ampG" /locus_tag="Rpic_0047" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.786 at residue 39" gene complement(60443..61636) /locus_tag="Rpic_0048" /db_xref="GeneID:6287300" CDS complement(60443..61636) /locus_tag="Rpic_0048" /note="PFAM: protein of unknown function DUF185; KEGG: rso:RSc0155 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF185" /protein_id="YP_001897645.1" /db_xref="GI:187927158" /db_xref="InterPro:IPR003788" /db_xref="GeneID:6287300" /translation="MSKTVSLPLPNEAAQAQSAHLFAVIADAIAAAGGWLSFDRYMEL ALYAPGLGYYSGGAAKFGRRVEDGGDFITAPELTPFFGRTVAHQLAQVLQALPEGQRH VLEFGAGTGKLAADILIELDALSVRPDSYGIVELSGELRQRQQERLTALGPDLGALAQ WHDTLPAPFTGVMIGNEVLDAMPVSLWARRGGMWHQRGVMLDAEHGLQWEDRLVDPSE VPAKLAALPGTDDFVTESHEAAEGFIRSTGAALERGLLLLIDYGFPAAEYYHAHRANG TLMCHYRQHAHDDPFWLPGLQDITAHVDFSGIAQAGQEAGLELLGYTSQARFLLSAGV GELLMTLDPSDPMQFLPAANAVQKLLSEAEMGELFKAIALGKGIDAALPLTGFADADR SNRLG" gene 61653..62471 /locus_tag="Rpic_0049" /db_xref="GeneID:6289749" CDS 61653..62471 /locus_tag="Rpic_0049" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rso:RSc0156 short chain dehydrogenase" /codon_start=1 /transl_table=11 /product="short chain dehydrogenase" /protein_id="YP_001897646.1" /db_xref="GI:187927159" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="GeneID:6289749" /translation="MAQTLNQSTAESTAESATQQRIALVTGAGRRVGRVIALALARHG WDVAVHCHRSRTEADAVAAEITAMGRRAAVLQADLSDEAAAGRLIADCSAALGTPTCL VNNASLFQYDVATSFSYASLDTHMRTNVAAPLLLSRELHRALTADGAEHRGVVINLLD QKLDNLNPDFLSYTLSKAALSTATMQLAQALAPALRVVGVAPGITMVSGDQSQGGFAR AHQMTPLGQSSTPEDIAEAVCYLATARAVTGTTLFVDGGQHLMPLARDVMFLTE" gene 62496..62894 /locus_tag="Rpic_0050" /db_xref="GeneID:6289750" CDS 62496..62894 /locus_tag="Rpic_0050" /note="KEGG: rso:RSc0157 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897647.1" /db_xref="GI:187927160" /db_xref="InterPro:IPR006157" /db_xref="GeneID:6289750" /translation="MLSLLSHPRLSHCRRMFLRNYEVQINIGVHEFEKKGEQRVLINI ELYVPLEHSSPTEDKLHEVVDYDFMRETVARRMAQGHIHLQETLCDDVLAAMLKHPHV LAARVSTEKPDVYPDCESVGVEVFRIKEQA" gene complement(63193..64122) /locus_tag="Rpic_0051" /db_xref="GeneID:6289751" CDS complement(63193..64122) /locus_tag="Rpic_0051" /note="PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: rso:RSc0158 probable arginase protein" /codon_start=1 /transl_table=11 /product="Arginase/agmatinase/formiminoglutamase" /protein_id="YP_001897648.1" /db_xref="GI:187927161" /db_xref="InterPro:IPR005924" /db_xref="InterPro:IPR006035" /db_xref="GeneID:6289751" /translation="MTIIDLIGAAIGCGAQDDGCKDGPRALLEAGALGRLQTRDTHAA LVHDIELAMSAGHSRSARLAALPGVAGFSRALGDATAHSVHQGHVPVVIGGDHSCAIG TWSGVANALRPRGPLGLIWIDAHLDSHTPQTSDSGAIHGMPLAALLGHGAAALTQIRD AAPKLLPEHVVVIGARSYEPAERALLDLLGVRVIDAAEVARNGLRAVMADAIRQVKSD TAAFGVTLDLDAFDPAVAPGVGTPETDGLTAQGMAQALAACARDARFAAFELVEYNPR HDKGGITAHLALDLLASVAGALHAQRREYATAA" gene complement(64147..65373) /locus_tag="Rpic_0052" /db_xref="GeneID:6289752" CDS complement(64147..65373) /locus_tag="Rpic_0052" /note="TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: rso:RSc0159 probable acetylornithine aminotransferase protein" /codon_start=1 /transl_table=11 /product="ornithine aminotransferase" /protein_id="YP_001897649.1" /db_xref="GI:187927162" /db_xref="InterPro:IPR005814" /db_xref="InterPro:IPR010164" /db_xref="GeneID:6289752" /translation="MTTAMQHPSYALEDRYGARNYAPLPVMLERGEGVWLFDTDGRRY LDMMSAYSAVSFGHSHPKLVAALTEQAGRLTLTSRAFHNTELGPFLADVCRITRMDRA LPMNTGAEAVETAIKAARKWARDVKGLPPEAAEIIVFDNNFHGRTTTIVGFSSHDQYR YGFGPFAAGFRRIPFGDADALRAAIGPNTGAILMEPVQGEGGIVEPPAGYLKLARELA TRHNVLLVCDEVQTGLGRTGDVLASWHEGVDADLVVLGKALGGGMVPVSAIAGREAVI GVFHPGDHGSTFGGNPLAAHIGRAALALLMEEQLPQRAARVGAAFINELKTLVGHGVR QVRGRGLMIGLQLDADIDAHDFAFALAERGVLTKDTYGNVVRLTPPLVIGEAELALAL DAIRQTLAGWPRRKVA" gene 65492..66415 /locus_tag="Rpic_0053" /db_xref="GeneID:6289753" CDS 65492..66415 /locus_tag="Rpic_0053" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc0160 probable transcription regulator protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_001897650.1" /db_xref="GI:187927163" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR002345" /db_xref="InterPro:IPR005119" /db_xref="GeneID:6289753" /translation="MSHSPLRYLHSFLTVANEGSFVRAADRLAVSQPALSYQMRQLEQ WLGVPLFERSGRKLVLTRAGTSVRAWCRDAFAGLDELRAALHSGEMERVSLKLASGSS FGRYVLMPALLTPSPESEAPLLDDVRLELVFGSDEEVFSHVESGRADLGFVYTPRTSR LFEHHAVYTEEFVLACSARVLREHAAPRTLADCAALPFVTYDESDAVYGLWFKALFRR MPETTVSAHHVSDLEEVSTLVEAGMGWSVLPLHAVQEAVERGRLQVVRPIATRRCLNT VFAVRRTSSFPSEAQDRLLVRLAQLDAAARV" gene 66502..67254 /locus_tag="Rpic_0054" /db_xref="GeneID:6289191" CDS 66502..67254 /locus_tag="Rpic_0054" /note="PFAM: regulatory protein TetR; KEGG: rso:RSc0162 probable transcription regulator protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_001897651.1" /db_xref="GI:187927164" /db_xref="InterPro:IPR001647" /db_xref="GeneID:6289191" /translation="MATFEPTSRGPGRPRRQDGVTQDGLRDRLLDIAVTLFARDGVGP TTLAAIAREAGVTAPMVHYHFKSRDQLLDAVVEGRIRPLVDQVTRPALAIIADDAHLP DLAQTLAGVAQRMVTVATATPWFPTLWIREIASEGGQLRERVFARIALERATLLVDRI ARAQAAGAVNAALQPPLVMVSVIGLAMLPLATRALWGRLPLADQVSDEAIGQHVAALL LHGIGPVAAPEEAGGKQAKPKRKPKPKSKGRK" gene 67303..68277 /locus_tag="Rpic_0055" /db_xref="GeneID:6289192" CDS 67303..68277 /locus_tag="Rpic_0055" /note="PFAM: secretion protein HlyD family protein; KEGG: rso:RSc0163 probable lipoprotein" /codon_start=1 /transl_table=11 /product="secretion protein HlyD family protein" /protein_id="YP_001897652.1" /db_xref="GI:187927165" /db_xref="InterPro:IPR006143" /db_xref="GeneID:6289192" /translation="MRQALCMGRAGCLAAALAAAIVLAGCAKHDDRTYQGYVEGEFVY VASPVGGRLDYLGVQRGQTVNAGAPLFVLESVDETAARQQAAAQLQGAEAQLADLNVG KRVPEVDAVRAQLAQAVAADKLSSTQLARDEAQFRAGGIAQSQLDASRSSAQTNAQRV RELTNQLRIAQLPARNDQIRAQSAQVEAARAAVAQAQWRLDQKAQKATQGGLVFDTLY REGEWVGAGSPVVRMLPPANVKVRFFVPQGVVGALKPGQAARLHCDGCAADINATVTY IATEAEYTPPVIYSNTTRDKLVFMVEARPAAADGPKLRPGQPVEVTLP" sig_peptide 67303..67377 /locus_tag="Rpic_0055" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.253 at residue 25" gene 68274..69254 /locus_tag="Rpic_0056" /db_xref="GeneID:6289193" CDS 68274..69254 /locus_tag="Rpic_0056" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc0164 probable ATP-binding ABC transporter protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_001897653.1" /db_xref="GI:187927166" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:6289193" /translation="MSTARPDSPDSRHHTGNGGYAIDVHSLNKHFGDKHVVKDLSMQV ARGEIFGFLGPNGSGKTTSIRMMCGLLTPDSGSGSCLGYDILKQSAQIKRRVGYMTQR FSYWDDLSIRENLDFVARLYEMPNRREAVDHALEHLGLASRAKQLAGSLSGGWKQRLA LAACMLHKPELLLLDEPTAGVDPKARRDFWEELHRLAAEGISVLVSTHYMDEAERCHK LAYIAYGELLAQGTADEVIAAQHLSTWSVSGGNLVELGRKLEGQPGVDQTVAFGSVLH VTGADAQALEGTLRKLAGESGMRAEPIDTGLEDVFIHMMRRSSDNYGTQP" gene 69251..70414 /locus_tag="Rpic_0057" /db_xref="GeneID:6289194" CDS 69251..70414 /locus_tag="Rpic_0057" /note="PFAM: ABC-2 type transporter; KEGG: rso:RSc0165 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="ABC-2 type transporter" /protein_id="YP_001897654.1" /db_xref="GI:187927167" /db_xref="InterPro:IPR000412" /db_xref="InterPro:IPR013525" /db_xref="GeneID:6289194" /translation="MKPEGNRFSLVRWWSVVLKEFLQLRRDRVTFAMMIGIPIMQLIL FGFAINADPRHLLTGVIAADQSEFTRSFLASMRNSDYFDLATTLTDETAGREALSKGQ LQFVVSIPPDFTRKLVRGEKPSLLVEADATDPAATGLAVASLSQLVQGVVSKDMKGAL SSLAGGAGTNGAAPPFDVRIHKLYNPEGITQYNIIPGLMGTILTMTMVMMTGLAMTRE RERGTMENLLATPVHPLEVMTGKIVPYISIGLVQVTIILLMAFFVFHVPFVGSVWMVY VSALLFIVASLTVGITLSSLAQNQLQATQLTFFYFLPNILLSGFMFPFVGMPKWAQVI GNLLPMTYFNRLTRGILLKGNGWFELWPSIWPLMVFTVVVLGVALRFYRKTLD" gene 70422..72161 /locus_tag="Rpic_0058" /db_xref="GeneID:6289195" CDS 70422..72161 /locus_tag="Rpic_0058" /note="TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RSc0166 probable outer membrane channel lipoprotein" /codon_start=1 /transl_table=11 /product="RND efflux system, outer membrane lipoprotein, NodT family" /protein_id="YP_001897655.1" /db_xref="GI:187927168" /db_xref="InterPro:IPR003423" /db_xref="InterPro:IPR010131" /db_xref="GeneID:6289195" /translation="MWTLWIRRADGGGASLVSSPAGADLLSLSCQRKVSKERRARDGD FPLNLCNRAETGKTRSAQTVPRLFSARLQKFKAPSRAGYGQTVGGHLLALGRALRCGE RAAGAVLIAALAVSGCAVGPDFKAPAGPAATGYSAQPVSRETASAPVVGGEAQHLVDA NVPADWWHLFRSPALDALVDEALRASPSVAQAEARLRQAQAEAQAQFGYALPSVDGTV SAVRQQINPEAFGFNTPKPGPFTLYSASLSVSYALDIFGGVRRALEASRAQVDTQRYE LEAARLSLAGNVVTTAVRIAALDAQIATTQRLAAEQRKQLEITERRLSVGGVAQVDAF SQRTLVAQTDATLPPLAQQAAQQRHRLSVLLGREPGAGLPDLPSLDALHLPDPLPVSL PSTLAQRRPDIRAAEAMWHEASANVGVATANLFPRITLSAGLGSEATSFRNLLGAGSS IWNLGAGLTQPLFHGGTLRAKKREAEAAYDAAGAAYKQAVLQGLQEVADTLHAVNNDA QTLQARALATDQAQQTLRAAQARHAAGGISTLTLLDAQRQVDQATLQQVQSQADRLLD SAALMQALGGGWQ" sig_peptide 70422..70493 /locus_tag="Rpic_0058" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.743) with cleavage site probability 0.740 at residue 24" gene complement(72444..73409) /locus_tag="Rpic_0059" /db_xref="GeneID:6288986" CDS complement(72444..73409) /locus_tag="Rpic_0059" /EC_number="1.1.1.169" /note="KEGG: rso:RSc0174 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein" /codon_start=1 /transl_table=11 /product="2-dehydropantoate 2-reductase" /protein_id="YP_001897656.1" /db_xref="GI:187927169" /db_xref="InterPro:IPR003710" /db_xref="InterPro:IPR013332" /db_xref="InterPro:IPR013752" /db_xref="GeneID:6288986" /translation="MTTAMRILVLGAGGTGGYFGGRLAQAGADVTFLVRPARAARLRQ HGLVIRSPHGDAQLPVQTITADQATAWGRADLVLLSCKAYDLEDAITAIRPVVGERTV VLPVLNGLAHLERLDAAFGESRVLGGLCHISATSAPDGAVLHLSNGQGPAVHSITFGE RTPHAPRERTEAIRDVFATANFDSVLAENVMQDMWEKFTFLTSLAAMTCLMRATVGEI VATDEGAALNEAMFNACERVAAASGYPNRQAARERGLNVLTQAGSPLTASMLRDLENG ARVEADHIVGDMLRRGRALGTDVSLLRVAFAHLQAYQQRLLRAAV" sig_peptide complement(72444..72524) /locus_tag="Rpic_0059" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.950) with cleavage site probability 0.759 at residue 27" gene 73564..74511 /locus_tag="Rpic_0060" /db_xref="GeneID:6288987" CDS 73564..74511 /locus_tag="Rpic_0060" /note="PFAM: PP-loop domain protein; KEGG: rso:RSc0175 hypothetical protein" /codon_start=1 /transl_table=11 /product="PP-loop domain protein" /protein_id="YP_001897657.1" /db_xref="GI:187927170" /db_xref="InterPro:IPR011063" /db_xref="GeneID:6288987" /translation="MTFSNNFHRLETRLQSQVGRAIGDFNMIEDGDTILVCLSGGKDS YTMLSVLMALQKRAPVDFKLIAMNLDQKQPGFPEEVLPNYLKKLGVEYVIVEADTYSI VKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVNTFFLNMFFGGKM KSMPPKLATDNGDHIVIRPLAYCAEKDIASYARAMEFPIIPCNLCGSQENLQRKKVKE MLLEWERQTPGRIDNIFASLRNVVPSHLADTDLFDFNGLTTGLAKIGEDALFGQTAYD QAPLVFAGSHDDRIEFVRFERKPGDKSAEQAVPGEAAAN" gene 74849..76216 /locus_tag="Rpic_0061" /db_xref="GeneID:6288988" CDS 74849..76216 /locus_tag="Rpic_0061" /note="TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: rso:RSc0177 probable UDP-N-acetylglucosamine pyrophosphorylase protein" /codon_start=1 /transl_table=11 /product="UDP-N-acetylglucosamine pyrophosphorylase" /protein_id="YP_001897658.1" /db_xref="GI:187927171" /db_xref="InterPro:IPR001228" /db_xref="InterPro:IPR001451" /db_xref="InterPro:IPR005835" /db_xref="InterPro:IPR005882" /db_xref="GeneID:6288988" /translation="MNIVILAAGMGKRMRSALPKVLHPLTGKPLLAHVIETARTMSPT RLVVVVGHGGDRVREMVGAPDIAFATQDKQLGTGHAVMQAVDQLDESVPTLVLYGDVP LTRAETLSALVGAAGNDHLGVLTVHLGDPTGYGRIVRDAAGRITRIVEQKDANETQLA IHEVNTGILVCPTAKLKSWLATLSNDNAQGEYYLTDVIERAASEGVPITSAHPLAEWE TLGVNSKVQLAELERIHQRNLAQQLLEDGVTLIDPARIDVRGKLTCGRDVVIDVNCIF EGDVTLADGVRIGAHTVIRDAAIEAGAEILPFCHIERAKVGADSRIGPYARLRPGTEL AEDVHIGNFVEVKNSQIAAHSKANHLAYVGDATVGSRVNIGAGTITCNYDGANKFRTV IEDDAFIGSDTQLVAPVRVGKGATLGAGTTLTKDAPEGKLTVSRARQVTIDSWQRPVK QKKEG" gene 76334..78172 /locus_tag="Rpic_0062" /db_xref="GeneID:6288989" CDS 76334..78172 /locus_tag="Rpic_0062" /note="Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source" /codon_start=1 /transl_table=11 /product="glucosamine--fructose-6-phosphate aminotransferase" /protein_id="YP_001897659.1" /db_xref="GI:187927172" /db_xref="InterPro:IPR000583" /db_xref="InterPro:IPR001347" /db_xref="InterPro:IPR005855" /db_xref="GeneID:6288989" /translation="MCGIVGAVSTRNIVPVLIEGLRRLEYRGYDSCGVAIQRDGQLER ARTVSRVADLDAQAQTSHLDGAIGIAHTRWATHGRPDTVNAHPHFSGDTIALVHNGII ENYEALREELKAVGYGFESQTDTEVVAHLIHQAYTYPSSKTRGDLFASVRASVKRLHG AYAIAVFARDNPDVVVGARAGSPLVVAIGENESFLASDALAVAGTASRMAYLEEGDVV ELTRDGFTVADANDKIVAREVKEVGTYAAAVELGPFRHFMQKEIFEQPRALGDTLEGV QGFAPDLFGPEAAQVLPKVDSVLILACGTSYYSGCTAKYWLESIAKIPTQVEVASEYR YRETVPNPNALVVVISQSGETADTLAALRHARELGHTHTLAICNVATSAMVRETQLKF LTRAGTEIGVASTKAFTTQLAALYMLALTFAKLRGHLNAEQEEDALRHLRHLPSALNA VLALEPQIIAWSEEFARRENALFLGRGLHYPIALEGALKLKEISYIHAEAYPAGELKH GPLALVTEQMPVVTVAPNDALLEKLKSNIQEVRARGGKLYVFADADTHIQSSDGIQVI RMPEHYGQLSPILHVVPLQLLAYHTALARGTDVDKPRNLAKSVTVE" gene 78297..78602 /locus_tag="Rpic_0063" /db_xref="GeneID:6289231" CDS 78297..78602 /locus_tag="Rpic_0063" /note="KEGG: scl:sce2246 putative monooxygenase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897660.1" /db_xref="GI:187927173" /db_xref="GeneID:6289231" /translation="MNYAGGSWGWSPHSTFATTSVKDTRCSAAASPISTWTPPWANRV RRADARYAGTWALPVVGTVPAPSAVLVRLGGHVAWVGDGPTEGLQAALLRWFGSVTA" gene 78730..79002 /locus_tag="Rpic_0064" /db_xref="GeneID:6289232" CDS 78730..79002 /locus_tag="Rpic_0064" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897661.1" /db_xref="GI:187927174" /db_xref="GeneID:6289232" /translation="MFNVLSKIVLLAVYGLALLSYATPLPLSTDAIGWLRIGALVLLA AHLLEVVLCFRKVALHKGPLFDSVLLTLLFGFLHWKPLADAARQAR" sig_peptide 78730..78798 /locus_tag="Rpic_0064" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.936 at residue 23" gene 79111..80031 /locus_tag="Rpic_0065" /db_xref="GeneID:6289233" CDS 79111..80031 /locus_tag="Rpic_0065" /note="PFAM: Patatin; KEGG: rso:RSc0221 hypothetical protein" /codon_start=1 /transl_table=11 /product="Patatin" /protein_id="YP_001897662.1" /db_xref="GI:187927175" /db_xref="InterPro:IPR002641" /db_xref="GeneID:6289233" /translation="MDRVERTAFVFAGGGSLGAIEAGMLRELVASGVVPDMVVGASAG AINAAFFACNPHAAGTAQLEALWRGVRRADVMPWSWRAMFSMLGILGGRREHLVDASG LQRLLTRHFAQTLLEAATLPLHVVATDMRTGAEVVLSSGAIVPAVLASAAIPGVFPPV RIGDRLLIDGGVANNTPISAAIRLGATRVVVLPAGFACADRRAPRSAIEHALNALSLL VARQLVQDLERWAGQVPIAVVPPLCPLDVSPYDYARCGELIDRAAAATAAWLAADGLA GTGIPGALRAHDHNEDHPNCSADLHGMPTA" gene 80154..81167 /locus_tag="Rpic_0066" /db_xref="GeneID:6289234" CDS 80154..81167 /locus_tag="Rpic_0066" /note="TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bte:BTH_II1160 alcohol dehydrogenase, zinc-containing" /codon_start=1 /transl_table=11 /product="zinc-binding alcohol dehydrogenase family protein" /protein_id="YP_001897663.1" /db_xref="GI:187927176" /db_xref="InterPro:IPR002364" /db_xref="InterPro:IPR013149" /db_xref="InterPro:IPR013154" /db_xref="InterPro:IPR014182" /db_xref="GeneID:6289234" /translation="MKAVAYYQSLPIDRPEALVDLTLPEPTPGPRDLLVEVRAISVNP VDVKVRLGMPPVDGQPRVLGWDAAGVVRAVGAEVSLFKPGDAVWYAGALQRPGTNSEL HVVDERVVGAMPATLGFAQAAALPLTAITAWELLFDRLQVPESAAPSGKTVLIVGAAG GVGSVLVQLARRLTGLTVIGTASRPETAAWVRELGAHHVINHAQPLAAELHRIGVPAV DYVASLNQTEHHFEQIVEALKPQGRLALIDDPAQLDVRKLKAKSLSLHWEFMYTRSMF GTDDQIEQHRLLNRVAALIDEGALRSTMNEHFGTINAANLKRAQAFIESNQARGKIVL EGF" gene complement(81169..82083) /locus_tag="Rpic_0067" /db_xref="GeneID:6289235" CDS complement(81169..82083) /locus_tag="Rpic_0067" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bte:BTH_II1158 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_001897664.1" /db_xref="GI:187927177" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR005119" /db_xref="GeneID:6289235" /translation="MIRFDDLTILVLAVDNGSLSAAARVLNIAPAAASAAVKRLEAEL GVRLLARSTRSLALTQEGERYLQHARRALADLQAGQDALALGRQAIGGDVSLSIPSDL GRNVLTGWLDDFLTEHPAVALQVRIGDRLVDMFRQRVDAAVRYGEPEDSSLVALPLAP DNRRVLCAAPAYFARHGVPKTPDDLRRHNCLLLALSDTTHDQWTFHGASDDGQAHVVR VTGNRIADDGELVRRWAVAGHGIAYKSRLDVLADLRAGRLQAALTDWRGEAAPLHLIC THRLALSPTLMRLRDFLQERIAGYLADA" gene complement(82250..84040) /locus_tag="Rpic_0068" /db_xref="GeneID:6289591" CDS complement(82250..84040) /locus_tag="Rpic_0068" /note="PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bch:Bcen2424_6540 pyruvate decarboxylase" /codon_start=1 /transl_table=11 /product="thiamine pyrophosphate protein TPP binding domain protein" /protein_id="YP_001897665.1" /db_xref="GI:187927178" /db_xref="InterPro:IPR000399" /db_xref="InterPro:IPR011766" /db_xref="InterPro:IPR012000" /db_xref="InterPro:IPR012001" /db_xref="GeneID:6289591" /translation="MQATVCDFLVARLYEWGVRRIFGYPGDGINGMFGALQRAGGKIE FVQVRHEEMAAFMASAHAKFTGELGVCMATSGPGAAHLITGLYDARLDHMPVLAITGQ QARTAVGGHYQQEVDLAAMFRDVAGAFVHQASMPAQVRHLLDRAVRIAIGQRRVTALV LPNDLQEMPYTEPPRAHGTVHSGVGYSAPSVIPQAADLERAADILNSGRRVAMLVGAG ALGASAEVAAVAETLGAGVAKALLGKAVLPDDLPYVTGAIGLLGTEPSWELMNHCDTL LMVGSGFPYAEFLPKEGQARGVQIDLDPGMLGLRYPMEVNLVGDSAQTLRALLPLLQR KTDPYWPDRIARWNESWWKTLEDRALQPAYPVNPQHVFWELSPKLPDDVIVTSDSGTC ANWYARDLKFKPGMMGSLSGGLASMGAAVPYAIAAKFAHPERPVIALVGDGAMQMNNM AELITVSKYWKRWKSSKWICMVLNNQDLNEVTWEQRVMEGDPKFPAAQDIPNVPYHRF AELIGLKGIYVDNPDQLAGAWDEALNADRPVVLEVKTDPDVPPLPPHVTLQQARNFAT ALAYGDPDASGVLRGTARQVLSALFPVHKE" gene complement(84093..84569) /locus_tag="Rpic_0069" /db_xref="GeneID:6289592" CDS complement(84093..84569) /locus_tag="Rpic_0069" /note="PFAM: Hemerythrin HHE cation binding domain protein; KEGG: azo:azo0331 hypothetical protein" /codon_start=1 /transl_table=11 /product="Hemerythrin HHE cation binding domain protein" /protein_id="YP_001897666.1" /db_xref="GI:187927179" /db_xref="InterPro:IPR012312" /db_xref="GeneID:6289592" /translation="MNKAEIPVAQRAVLSMLLDDHREVKKLFKTFQQEKDEATREQIV REACEKLTVHTQLEEEVFYPYVRDNGGEAFKDLVDEAVVEHATAKDLIQQLNGMHAGD DLFAAKFTVLAEYVSHHVEEEETELFPKLVRQHVDLTPLQETMAARKEALLAETAS" gene 84766..85236 /locus_tag="Rpic_0070" /db_xref="GeneID:6289593" CDS 84766..85236 /locus_tag="Rpic_0070" /note="PFAM: PRC-barrel domain protein; KEGG: bvi:Bcep1808_5723 PRC-barrel domain protein" /codon_start=1 /transl_table=11 /product="PRC-barrel domain protein" /protein_id="YP_001897667.1" /db_xref="GI:187927180" /db_xref="InterPro:IPR007903" /db_xref="GeneID:6289593" /translation="MQTTTTGTALGTGTGTGVGTTAGVRMRIIGRADSDSAGPGPELM AADTLEGDRVVNLNGEDLGKITDIMLDVQRGRIAYAVMSVGGFLGIGDKLFAVPWSAM SLDVDRKCFVLDANKDRLEAAPGFDKDSWPTMADPTWAQSVHEYYGSRPYWEEY" gene 85298..85486 /locus_tag="Rpic_0071" /db_xref="GeneID:6289594" CDS 85298..85486 /locus_tag="Rpic_0071" /note="KEGG: bxe:Bxe_B1328 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897668.1" /db_xref="GI:187927181" /db_xref="GeneID:6289594" /translation="MEKGKKEKHPHAHKREELVEKAVEDTFPASDPPATGGITRVVDK DKDADAHQDKRTHSGKHR" gene complement(85554..85907) /locus_tag="Rpic_0072" /db_xref="GeneID:6289595" CDS complement(85554..85907) /locus_tag="Rpic_0072" /note="PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sme:SMc01667 hypothetical protein" /codon_start=1 /transl_table=11 /product="Glyoxalase/bleomycin resistance protein/dioxygenase" /protein_id="YP_001897669.1" /db_xref="GI:187927182" /db_xref="InterPro:IPR004360" /db_xref="GeneID:6289595" /translation="MAVRRIAPNLHAADPARARAFYAELLDLEAVMDHGWIVTFADTA ATMTPQVSIASEGGNGTPVPALSVEVDDVDAVHTRAVSLGLEIVYPLVDEPWDVRRFY VRDPFGNVVNILAHR" gene 86034..87242 /locus_tag="Rpic_0073" /db_xref="GeneID:6288836" CDS 86034..87242 /locus_tag="Rpic_0073" /note="PFAM: aminotransferase class I and II; KEGG: rso:RSc0229 putative amino transferase protein" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator, GntR family" /protein_id="YP_001897670.1" /db_xref="GI:187927183" /db_xref="InterPro:IPR004839" /db_xref="GeneID:6288836" /translation="MEFLQSLLAPRLQNVETSAIRELFKVLGKPGLISFAGGFPDAAL FDVEGLKAAADSALTTDAARALQYGATEGFEPLREAIVTLMKARGANVANTDILVTTG SQQGLDLLGKVLIGEGDTVLTEAPTFLAAIQAFKLYGAKVAGVPTDGDGLDVDALEKV LSTARPKFLYVIPNFGNPSGALMSLERRKRLLDVAVRHNLLIVEDDPYGDLYFDAPPP PSLYALSQQTDGAQGRVIYLGSLSKVVAPGLRVGWMIASQPVLGNAVMVKQFADAHTS TFAQATAAAYLRSNRLETVLPRTRAAYAERAHAMANGLRALLPDTELTFNRPRGGMFL WCTLPGRNAGDVAKMAIERGVAFVPGAAFYPVDPDRSTLRLSYATSSLAQVEEGVRKL AHAIGEFKLG" gene 87263..87769 /locus_tag="Rpic_0074" /db_xref="GeneID:6288837" CDS 87263..87769 /locus_tag="Rpic_0074" /note="PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_A1506 hypothetical protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AraC family" /protein_id="YP_001897671.1" /db_xref="GI:187927184" /db_xref="InterPro:IPR000005" /db_xref="GeneID:6288837" /translation="MAQAHTDAQQDPALLRRLLRAKDRMDAASHEAWPVKRLAEVSGV SAAHFARSFKQAFGIPPHRYLLTRRIEQATTLLRDTDLPIIEIAYATGWESLGTFGRI FRDITGQSPSALRRHAQATASLQQLDRVPACVLKAAQRPDLVTAVSEKRRQLAEGTNP SPTNNKER" gene 87769..88185 /locus_tag="Rpic_0075" /db_xref="GeneID:6288838" CDS 87769..88185 /locus_tag="Rpic_0075" /note="PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_A1507 hypothetical protein" /codon_start=1 /transl_table=11 /product="Glyoxalase/bleomycin resistance protein/dioxygenase" /protein_id="YP_001897672.1" /db_xref="GI:187927185" /db_xref="InterPro:IPR004360" /db_xref="GeneID:6288838" /translation="MSQGINVVGLYVDDQDAALAFYVDKLGFRVHTDVRNGPYRWLTV QHPEQPSFQLGLFQPGPPIHDEATAQTLRAMVAKGAMPPLVLTVADCRAAYAQLRERG VEFTQEPIDRFGSVDAGFRDPAGNGWKMIQAAGGAQ" gene 88182..88436 /locus_tag="Rpic_0076" /db_xref="GeneID:6288839" CDS 88182..88436 /locus_tag="Rpic_0076" /note="KEGG: mes:Meso_0629 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897673.1" /db_xref="GI:187927186" /db_xref="InterPro:IPR010916" /db_xref="GeneID:6288839" /translation="MSAPNAIRQFHRWVSMAFTLTVIANFVAMGVGKGAQPPAWITYA PLLPLALLLFTGLYLFALPYLDRRGARRSTGDRGAPTAAI" sig_peptide 88182..88274 /locus_tag="Rpic_0076" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.710) with cleavage site probability 0.667 at residue 31" gene complement(88744..89940) /locus_tag="Rpic_0077" /db_xref="GeneID:6288840" CDS complement(88744..89940) /locus_tag="Rpic_0077" /note="PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr7376 putative integral membrane transporter protein" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_001897674.1" /db_xref="GI:187927187" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:6288840" /translation="MPASLWWLCLGAFAIGTEGFMIAGLLPVLAADLGVSVPAAGQLV TVFAVTYAVGSPVMATLLGNVDRRRVLIGALAIFAAGNLLAATAHGFGQLMAARVLLA LAAGVFLPTANAVATSLVPASRSGSALAIITGGGTVAVALGVPLGAWIAAQGDWRSTF IACGVLSALATAGLAFGLPRALPHSVTTLAQRLSVARRTGMLGALAVSALWAAGGFTF YTYVAPFFVQGLGFAPQHVGIVLFLVGSFAALGTGLGGHLTDRAGVARVLAVSSAGIV LAFSVLSLSAQVLHGTVAGAVAIGAVVLWGMAGWGFGPAQATRLIRLAPDVSPITLSL HASAVYAGIALGSSVGALALAHGGPGMLGWAAAACHVVAVVLWRMGGRHEAALADEPA ATSVAH" sig_peptide complement(88744..88836) /locus_tag="Rpic_0077" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.797) with cleavage site probability 0.790 at residue 31" gene complement(90003..90710) /locus_tag="Rpic_0078" /db_xref="GeneID:6288884" CDS complement(90003..90710) /locus_tag="Rpic_0078" /note="PFAM: Glutathione S-transferase domain; KEGG: bpe:BP1300 putative glutathione transferase" /codon_start=1 /transl_table=11 /product="Glutathione S-transferase domain" /protein_id="YP_001897675.1" /db_xref="GI:187927188" /db_xref="InterPro:IPR004045" /db_xref="InterPro:IPR004046" /db_xref="GeneID:6288884" /translation="MIDLYYCATPNGLKMALFFAETGLPHRVIPVDISRGDQFKPEFL AISPNNKIPAMVDHDPAEGSDPVVLFESGAMLLYLAEKTGQLTPADLHGRMEVLKWLF WQVGGLGPMAGQIGHFNVYAPERVHYAIERYTKETNRLYGVLDRRLADRPYIAGNDYT IADIAAYPWIVPHAGHGQDLNDFPNLQRWFEAVGARPATQRAYAGVERAYSRRREDIS DDERNVLLGQTASSTAR" gene complement(90805..91998) /locus_tag="Rpic_0079" /db_xref="GeneID:6288885" CDS complement(90805..91998) /locus_tag="Rpic_0079" /note="PFAM: low temperature requirement A; KEGG: rso:RSc0230 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="low temperature requirement A" /protein_id="YP_001897676.1" /db_xref="GI:187927189" /db_xref="InterPro:IPR010640" /db_xref="GeneID:6288885" /translation="MPRSYLRPSPEGAHGHHRVTNIELFFDLVFVFAVTQLSHLLISN FTLQGGAQALLLMLAVWWVWIFTSWVTNWLDPDKLAIRMLMLVLMTGGLLLSASLPQA FGSRGLAFALAYVFMQFGRTVFFMWAVRGESLPMRRNFQRIATWLGISAVLWLAGGLS DGSARWACWIFALVIEWLGPSMGFYTPGLGRSTTNDWNVEGGHMAERCSLFIIIALGE SVLVTGSTFAGLAWTAENIAAMALSFIGSLAMWWLYFDRIAERGARTMSHSADPGRLA RLAYTYIHVVLVAGIIVGAVADEFVLAHPVGRAHEGTTLAVLGSAALYLLGNLLFKWA IFGRLRPAHAVGLVVLGGAWLPAGELPALAVSALATGVLCGTAAWEWYARSCETAEPE AAHNP" gene complement(92033..92680) /locus_tag="Rpic_0080" /db_xref="GeneID:6288886" CDS complement(92033..92680) /locus_tag="Rpic_0080" /note="PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rso:RSc0231 putative (homoserine/homoserine lactone) efflux transmembrane protein" /codon_start=1 /transl_table=11 /product="Lysine exporter protein (LYSE/YGGA)" /protein_id="YP_001897677.1" /db_xref="GI:187927190" /db_xref="InterPro:IPR001123" /db_xref="GeneID:6288886" /translation="MTLQTWLAFIGASIIILLIPGPTILLVIGDSLANRGRSAWSTVA GVAAGDTTAMAVSLAGAGALLAASAAAFTALKLIGGSYLVYLGIKSILSARRLQDDVQ ADAPEATIPVQQKSAGRRFLSAWTVTALNPKSIVFFVAFVPQFMSAEQTFLSQSVILL PTFVILAAANASMYALAAKLLAKRLTSVAAQRRFGYTGGAVMVGAGTLTLGMQSA" gene complement(93079..93321) /locus_tag="Rpic_0081" /db_xref="GeneID:6288887" CDS complement(93079..93321) /locus_tag="Rpic_0081" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897678.1" /db_xref="GI:187927191" /db_xref="GeneID:6288887" /translation="MGRVFLCVFWTWWSIPLSFPAGTDLLFFVLPKKSKQKKGAPEMA TPSLDLCRGEGKEPNSLRSDKAPSFFLPATKIQGAI" gene complement(93314..94294) /locus_tag="Rpic_0082" /db_xref="GeneID:6288631" CDS complement(93314..94294) /locus_tag="Rpic_0082" /note="PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc0233 putative integral membrane transmembrane protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF6 transmembrane" /protein_id="YP_001897679.1" /db_xref="GI:187927192" /db_xref="InterPro:IPR000620" /db_xref="GeneID:6288631" /translation="MAVGDTSTATQLHHGQHDARRDHLTGIGYGVAAGALWGVIFVAP KMLPQFSPLALSAARYVLYGVLSLALALPVWRTLWRKTTGREWAALLLLSLPGNILYY LCVAGGVQRAGVAPVSLIVGLLPVTVTLAGAAERGSLPLRQLALPLLMAVAGVVCIYL DAPDVHSSAGGRTYLFGLLMAAGALACWTVYAVCNARYLRARPQFTSREWSLLTGVAT GVLSLALAVPAFLLPGMATASAQPPSAWGMFWLVNIGVALGASVLGNSLWNAASRKLP LTLSGQLIVFETVFALLYGFIYEARWPHGLEVAAAVLLVSGVGLAARRHG" gene complement(94401..95123) /locus_tag="Rpic_0083" /db_xref="GeneID:6288632" CDS complement(94401..95123) /locus_tag="Rpic_0083" /note="PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rso:RSc0234 probable transcription regulator protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AraC family" /protein_id="YP_001897680.1" /db_xref="GI:187927193" /db_xref="InterPro:IPR000005" /db_xref="GeneID:6288632" /translation="MLDFRTYGLAAPPHSHDFMQVVMPARGILEMDVDGRGGRVDTHH AALIPAGATHAFEATGANRFIVFDIPGQTVDAPSLGGLADRVFFPLTPGLRALTTWLQ DAPIVDAVLANAWSSLALATLAAHPVNQAAQIRARPDARAERAWHAIEHRYAEPLTVD ALAAEAGVSARRLATLFRATYGTTLHAHLAQVRLRHALTLLETTALPIAEIAARTGYY DQSALTRHLKAAHGVTPAAVRR" gene complement(95357..98572) /locus_tag="Rpic_0084" /db_xref="GeneID:6288633" CDS complement(95357..98572) /locus_tag="Rpic_0084" /note="PFAM: transcriptional activator domain; KEGG: gur:Gura_0766 tetratricopeptide TPR_4" /codon_start=1 /transl_table=11 /product="transcriptional activator domain" /protein_id="YP_001897681.1" /db_xref="GI:187927194" /db_xref="InterPro:IPR005158" /db_xref="GeneID:6288633" /translation="MNSAPTLSKINRPQSGGIVLRPRVLNRIGRGFAASPIVWVASPA GSGKTKLAISYLEASGLPAIWYEVDAGDMDPASFFRTFGQACAAHLGADSATQPPLFS PDHLFDLAAFARRYFRALFSGLPEATLLVLENVHAAEAEPSFKGILQAALAEASEHVR ILVLSRSAPPPELARLQANQQLALVDWQHLRLTEEETGAILAGHPAALATLEQRPDAE RELAGGLHARSGGWVAAVVLLLDQIGRVGSYDVDRLDSREVLFPYFAQEMIVAASPEL RRFLLCTAILPNFDLAEARQLTGSTDVDHFVTSAHCQQYFIDQFGSGAGASYQYHALF REFLLSRLPDAFSADERQQLTANAAALLEARGELAGAGELLADAGLMPQLAALALRHA PMVLQQGRYRTLSDLLGQLPTAVLNADPWLLFWAGTSRMALDPGNARLYFEPALTLFQ AHDNAAGCYLAWSSIVDCIYFESRDYRPLTHWLEMLDTLRARYPAFPDAQIEARVLAS VLAALAFHAMGHADSRHWTDRALVFIGTVDVQTQASLGFMLTVYHLWTGDLERARVVL QLMRAAVASPQTSDLLRTTILTTEAMGYWFFAENDACIAVVEQTEALMHASDIYLWKH ALLNHGLAAAISAGNVMEAESFRAKLAQDIHMGRPLDQAMHHFERGWLALQQDRLREA ELMVEFGRNGFRSLNFRFGVAFTLATSAYIAHLLGQAEQADTFVEEAEALSRDVDSKV ALCHTLMVRAVMALDRGAPTSPWLPEALALGRRFGITNFPGWHDPMVARLAAHALATG IETNYVTALVRKRRLQAPTARVKHWPWEIELRVLGAFSVSCSGEPLAQSGKGNRRTLD TLKAIVAYGGREVAIDHLSAALWPDADGDSAKGAFDVAIHRLRKLLGNADAIVVSNGK VGLNMHLCGLDLWTFQAHRQIALDLAKTPDPDSDTLLTAALDMLAAYTGDFLADEAEQ PWLLPQRERLRAELVRTVLTVGEKLEALNAPTSATTVYQRALRLHPTAEGICRHLLEC LRAEGRSAEASAFFAEWQHTLKVVYGAAPSPSLVAMLDWIR" gene 98936..100576 /locus_tag="Rpic_0085" /db_xref="GeneID:6288634" CDS 98936..100576 /locus_tag="Rpic_0085" /note="KEGG: reu:Reut_A0370 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897682.1" /db_xref="GI:187927195" /db_xref="GeneID:6288634" /translation="MKLTPIAISAAVLVLTACGGGGDAPPQLTTQQSQTISGVAATGA ALPGATVNVTCSAGSGTATTRADGSYSAPITGASLPCVVTATSSDGKTVLHSLVAGSG SIGSTATANITPLTELLLAQLAGQDPAKYVAGFSSTTTVNASDVTAAQAALIKVLQSA GFDASGIGDFLGGTLSAGSGQGYDGVLDTLQSKLAGAGVTLTDLSTAVASTSGSSSGS AGSTVGTVLAPANSACPALKSGDHRLIKFSDGSAQVVTIDAAKLTVAVGGSSYQLTQG ATACDYTLNDTGSTRVLVAKSGMAVWTNGSGGTGVLSLSLPKQIVDPTAINGNYIYAL LSGAGQGTFGTNNYAKGVVTAATNCAVNAPCAPDLNSPYGHMVATSDGGVDWVDDGAS AGTVNAHAYGFRNAQGNTVFVVALTGGGVGIFAPQTTLSMPAVGTTNAFWQSNVKSTG LSAVTEDSNTITAVNGSTVTRTFADTHTDQIIYNDPFAGLRHRPGTKVCTNTSGVAVT CNETWQLPLSGLTLALSGSPSVTPSTYQVNFSVNKPGN" sig_peptide 98936..98995 /locus_tag="Rpic_0085" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.966) with cleavage site probability 0.451 at residue 20" gene complement(100821..101177) /locus_tag="Rpic_0086" /db_xref="GeneID:6287808" CDS complement(100821..101177) /locus_tag="Rpic_0086" /note="PFAM: protein of unknown function DUF427; KEGG: rso:RSc0235 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF427" /protein_id="YP_001897683.1" /db_xref="GI:187927196" /db_xref="InterPro:IPR007361" /db_xref="GeneID:6287808" /translation="MPEIDPNHPITVESNPRRVTVTLNGFTIASTHLARTLREASYPP VQYIPRDDVQMNLLERTQHHTHCPYKGDASYYTIVAGDVRADNAVWTYEQPKPVAREV AGYLAFYPNKVTIQEE" gene complement(101262..102464) /locus_tag="Rpic_0087" /db_xref="GeneID:6287809" CDS complement(101262..102464) /locus_tag="Rpic_0087" /note="PFAM: Rh family protein/ammonium transporter; KEGG: rme:Rmet_4750 Rh-like protein/ammonium transporter" /codon_start=1 /transl_table=11 /product="Rh family protein/ammonium transporter" /protein_id="YP_001897684.1" /db_xref="GI:187927197" /db_xref="InterPro:IPR001905" /db_xref="InterPro:IPR010256" /db_xref="GeneID:6287809" /translation="MNSIKTGGDALFILLGAIMVLAMHAGFAFLELGTVRKKNQVNAL VKILVDFAVSTIAYFFIGYSVAYGVNFFTGADVLAQQNGYELVKFFFLLTFAAAIPAI ISGGIAERSRFEPQLAATFVLVGFVYPFFEGIAWNERFGIQHWLQSVTGAEFHDFAGS VVVHAVGGWIALPAVLLLGARHGRYKDDGRIAAHPPSNIPFLAAGAWVLAVGWFGFNV MSAQTLDKMSGLVAINSLMAMVGGTLTAWWMGKNDPGFSYNGPLAGLVAVCAGSDVMH PLGALAVGGIAGVLFVWMFTRVQNVWRIDDVLGVWPLHGLCGAWGGIAAGIFGLKALG GLGGVSFWAQVAGTAGGIVIALVGGTVVYGTLRKLVGLRLDREAEFMGADLAIHRVSS TPESETHW" sig_peptide complement(101262..101348) /locus_tag="Rpic_0087" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.959) with cleavage site probability 0.545 at residue 29" gene complement(102724..103749) /locus_tag="Rpic_0088" /db_xref="GeneID:6287810" CDS complement(102724..103749) /locus_tag="Rpic_0088" /note="KEGG: rso:RSc0236 hypothetical/unknown signal peptide protein" /codon_start=1 /transl_table=11 /product="conserved hypothetical/unknown signal peptide protein" /protein_id="YP_001897685.1" /db_xref="GI:187927198" /db_xref="GeneID:6287810" /translation="MPSRATMRWCLTALLAWSGHALAWDYTPGAIPGLISVLGFLTVQ SQALDRAIQRFPGQREELIRARTQFDNTFPQALARTRRLIAGIPLSDDERQLLIERAL DLHQPSVGVATQTAETAHSLAERVVARAQGSQDRATLQTLLAVVYDDRPADELGSRFT QAVTLSDWPNARGASLALRLPFSWERVPPTAPRKPDPARVAIGAWANQGGSGLSRIEL IVRPTEGDPETVPDSREPRWMRDAVKQAVAAPCRLLGWGTQSFGGRIGVWASYIGESP GPNIPRAPGNTLVGRVFMVPTDGALLMLHMQSLATSPEQASAVRLRYEPLWDAVAASF SVSGAKP" sig_peptide complement(102724..102795) /locus_tag="Rpic_0088" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 24" gene 104095..107382 /locus_tag="Rpic_0089" /db_xref="GeneID:6287811" CDS 104095..107382 /locus_tag="Rpic_0089" /EC_number="5.4.99.2" /note="KEGG: rso:RSc0237 putative methylmalonyl-CoA mutase protein; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: ArgK protein; methylmalonyl-CoA mutase; cobalamin B12-binding domain protein" /codon_start=1 /transl_table=11 /product="methylmalonyl-CoA mutase, large subunit" /protein_id="YP_001897686.1" /db_xref="GI:187927199" /db_xref="InterPro:IPR005129" /db_xref="InterPro:IPR006098" /db_xref="InterPro:IPR006099" /db_xref="InterPro:IPR006158" /db_xref="InterPro:IPR006159" /db_xref="GeneID:6287811" /translation="MTDLSAARAADPTPASEPGPARNKVRFVTAASLFDGHDASINIM RRILQSMGCEVIHLGHNRSVDEVVNAALQEDVQGIAVSSYQGGHVEYFKYMIDALRAR GGEHIQVFGGGGGVIVPAEIRELQDYGVARIYSPEDGQRMGLAGMIADMVQRCDIDLS IHAPATLDPVANGDRRALAQLITALESGRIDPPLREAVHAAAAATPTPVLGITGTGGA GKSSLTDELIRRFRLDQQDTLRIAVISIDPSRRKSGGALLGDRIRMNAINHPNIFVRS LATREASREISDALPDVIAACRAAGFDFIIVETSGIGQGDAAIVPHVDLSLYVMTPEF GAASQLEKIDMLDFADLVAINKFDRKGAQDAWRDVAKQVQRNREQWHARPEDMPVFGT QASHFNDDGVTALYHALADRLNERGMALAERTLPRPAGKCSTSHDAIVPPARVRYLAE LADTVRGYHRRVDAQSRLARERQQLRASHRMLEQAGATVQTLSALDKQAAERDAQLGA AERKLLAMWPDLRRAYSGDEYVVKIRDKEIRTQLTHTTLSGTTIRKVVLPPYEDDGEV LRWLMRENVPGSFPYTAGVFAFKRENEDPTRMFAGEGDAFRTNRRFKLVSEGMEAKRL STAFDSVTLYGEDPALRPDIYGKVGNSGVSIATLDDMEVLYDGFDLTSPATSVSMTIN GPAPTILAMFMNTAIDQNLARFRADNQREPTQDEEAKIRAWVLQNVRGTVQADILKED QGQNTCIFSTEFSLKVMGDIQEYFVHHQVRNFYSVSISGYHIAEAGANPISQLAFTLA NGFTYVEAYLARGMHIDDFAPNLSFFFSNGMDPEYSVLGRVARRIWAVTLRDKYGANE RSQKLKYHVQTSGRSLHAQEIAFNDIRTTLQALIAIYDNCNSLHTNAYDEAITTPTAE SVRRALAIQLIINREWGLAKCENPNQGSFVIDELTDLVEEAVLREFERIAERGGVLGA METGYQRGRIQEESMLYEQRKHDGSLPIIGVNTFRNPDADSVVPPHIELARSSEEEKQ SQLARLQDFHARHAGEAPAMLQRLQRAVIDDQNVFAVLMDAVRVCSLGQITHALFEVG GQYRRNM" gene 107696..108550 /locus_tag="Rpic_0090" /db_xref="GeneID:6286593" CDS 107696..108550 /locus_tag="Rpic_0090" /EC_number="1.1.1.157" /note="converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA" /codon_start=1 /transl_table=11 /product="3-hydroxybutyryl-CoA dehydrogenase" /protein_id="YP_001897687.1" /db_xref="GI:187927200" /db_xref="InterPro:IPR006108" /db_xref="InterPro:IPR006176" /db_xref="InterPro:IPR006180" /db_xref="GeneID:6286593" /translation="MAIQVVGIVGAGTMGNGIAQACAVVGLDVVMVDISDAAVQKGIA TVAGSLDRLIKKEKLTEADKAAALARIQGSTSYDDLKRADLVIEAATENFDLKVKILK QLEAAAAPHAIVASNTSSISITKLAAVLQDASRFIGMHFFNPVPMMALVEVIRGLQTS DATHAAVEALAKQLGKTPITVKNSPGFVVNRILCPMINEAFCVLGEGLASPEEIDEGM KLGCNHPIGPLALADMIGLDTMLAVMEVLYTEFGDPKYRPAMLMREMVAAGYLGRKTG RGVYDYRK" sig_peptide 107696..107761 /locus_tag="Rpic_0090" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.774) with cleavage site probability 0.737 at residue 22" gene 108707..109564 /locus_tag="Rpic_0091" /db_xref="GeneID:6286594" CDS 108707..109564 /locus_tag="Rpic_0091" /note="TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: rso:RSc0253 hypothetical protein" /codon_start=1 /transl_table=11 /product="phenazine biosynthesis protein PhzF family" /protein_id="YP_001897688.1" /db_xref="GI:187927201" /db_xref="InterPro:IPR003719" /db_xref="GeneID:6286594" /translation="MSRYAFRLLNVFAESTFGGNQLAVFEDGHGLDDATMQAIGRQFN LSEITFIFPDEADGATARFRIFTPDYEMPFAGHPSLGTAQVVRELYGPGNELTLRCQS GIVSLTAQDEGWSLVPPRSGALNTREADPAVAKMLGLDADALAGPPLWVDAGIEQLMV PVKTRADVERARPDPSAFDVWPRSRNDGRNAYVFTMPAPGSNDPVVSRFFFEYGTGLW EDPGTGSACANLGGWLRATGHALPATYRIEQGAAVGRPCHLTLRVDADGTIHVGGRVI EIGRGTLTI" gene complement(109582..110130) /locus_tag="Rpic_0092" /db_xref="GeneID:6286595" CDS complement(109582..110130) /locus_tag="Rpic_0092" /note="PFAM: GCN5-related N-acetyltransferase; KEGG: bpl:BURPS1106A_3175 acetyltransferase, GNAT family" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_001897689.1" /db_xref="GI:187927202" /db_xref="InterPro:IPR000182" /db_xref="GeneID:6286595" /translation="MIDTLTIRRVGANEASACIDALADVLIDCVEGGASVSFMAPLSQ DKARAFWRNVAEGVARGERALLIAEDEAGAIHGTVQLVLAQPENQPHRADVAKMLVHR RARRQGVAQRLMAAIEDEARAEGKTVLVLDTVTGGDAERLYARAGWQRVGVVPNYALM PDGAFCGTTFFCKQLCAPDSAA" gene complement(110130..110258) /locus_tag="Rpic_0093" /pseudo /db_xref="GeneID:6286596" gene 110307..110390 /locus_tag="Rpic_0094" /pseudo /db_xref="GeneID:6288703" gene complement(110413..111888) /locus_tag="Rpic_0095" /db_xref="GeneID:6288704" CDS complement(110413..111888) /locus_tag="Rpic_0095" /note="PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: rso:RSc0254 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1254" /protein_id="YP_001897690.1" /db_xref="GI:187927203" /db_xref="InterPro:IPR010621" /db_xref="InterPro:IPR010679" /db_xref="GeneID:6288704" /translation="MTHCPAPVRLLTKRAAVALSVVASALTLGLAGCSTQNAAATAPI EQRLPKPNEALVRSAYVYAFPLMMTDALLQTTSALAPAGTFMHQRTLEDEALPTGVRA RVDVLASSAFVDLRNGPVVLSLPDAGRRHLWVALHDGWNDVFESLGNRTTGARAAHYA ITPPGWEGTLPTGVKQIAAPTSLVWVVARTQVAGPRDLTAARRVQDRYRITPLDAFGK TSLRDAEAETKVNTDKATDLDVSMDAARRRVTALDANSYFTRFAELLKDNPPHAADST MLQSLRDLGIVPGAPFDAKAVTAANLKAMDGGVAAARETLSLAVKQPPITQNGWFIPR MVGAYGLDYAQRAIVAWNGGGTDLPQDMLIATAKTDTNGIALDSTHRYVLHFERNQLP PENAGWAIAALSPGGQPRSTAERPGLRNMLSEADHPRLNRDGSLDILIQRAPPKGMRN NWLPPPTGPFLLRLQLTWPKEAALDASWLPPAVQRRDAATP" sig_peptide complement(110413..110529) /locus_tag="Rpic_0095" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.435 at residue 39" gene complement(112098..113081) /locus_tag="Rpic_0096" /db_xref="GeneID:6288705" CDS complement(112098..113081) /locus_tag="Rpic_0096" /note="PFAM: 2-nitropropane dioxygenase NPD; KEGG: rso:RSc0255 hypothetical protein" /codon_start=1 /transl_table=11 /product="2-nitropropane dioxygenase NPD" /protein_id="YP_001897691.1" /db_xref="GI:187927204" /db_xref="InterPro:IPR004136" /db_xref="GeneID:6288705" /translation="MPAAKHLPPVLQHLTLPVIGSPMFIVSYPELVLAQCKAGIVGAF PALNARPAEVLDAWLTQMNEDLAAYRAAHPDAVVGPIAVNQIVHHSNARLEQDVATCV KHKVPIFITSLRAPVKEILDAVHSYGGIVLHDVINLRHAEKALEAGVDGLILVAAGAG GHAGTLSPFALVGEVRRIFDGPIALSGAIATGDAILAAQAMGADFAYIGTRFIASQEA HAAESYKQAILRAAASDIVYTNLFTGVHGNYIRESIELAGLDPAALPEADKSKMNFGD GSSRAKAWKDIWGAGQGVGQIADLPPAAEIVARMKAEYDAAKLRLALHLRL" gene complement(113183..113731) /locus_tag="Rpic_0097" /db_xref="GeneID:6288706" CDS complement(113183..113731) /locus_tag="Rpic_0097" /note="TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: bxe:Bxe_B1164 peptidase C56, PfpI" /codon_start=1 /transl_table=11 /product="intracellular protease, PfpI family" /protein_id="YP_001897692.1" /db_xref="GI:187927205" /db_xref="InterPro:IPR002818" /db_xref="InterPro:IPR006286" /db_xref="GeneID:6288706" /translation="MTPLHDMRIAILVDDLFEQAELASPKQALEGAGATVSIIAPKGP SVTGLHHATKGDTFKVNLTLDQAKADDFDGLVLPGGVFNADALRVVPAAQAFVKAFER AQKPIAVICHGPWLMVSAGLVRGRTLTSWPTLQDDIRNAGGMWVDREVVTDRNWVSSR KPDDLPAFNRTFIELLAQHAHV" gene 113869..114795 /locus_tag="Rpic_0098" /db_xref="GeneID:6286565" CDS 113869..114795 /locus_tag="Rpic_0098" /note="PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc0256 hypothetical haloacetate dehalogenase H-1 protein" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold" /protein_id="YP_001897693.1" /db_xref="GI:187927206" /db_xref="InterPro:IPR000073" /db_xref="GeneID:6286565" /translation="MTTPLSIDAATAAADAALFPGFRPFRQMANGVEIAGVIGGSGPP LLLLHGHPQSHMIWHKVARELAHDYTVVATDLRGYGASSKPAGSARHAEYSKRTMAQD QVEVMRALGFGRFRLCAHDRGARVAHRLCVDHPLHVERAMLLDIAPTLAMYEHTDMAF ASAYWHWFFLIQPSPFPETLINATPDFYIGKLMGLRHAGLEPFAPEAMATYAAAMREP ACVHAMCEDYRAAATIDLEHDRADRDAGKRVSVPLRVLWGEHGVIQRCFKPLELWKAV ADNVSGGTVPCGHYVPEEAPEALLEEMRAYFA" gene complement(114805..115488) /locus_tag="Rpic_0099" /db_xref="GeneID:6286566" CDS complement(114805..115488) /locus_tag="Rpic_0099" /note="PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: bpm:BURPS1710b_A0200 putative hydroxylase" /codon_start=1 /transl_table=11 /product="2OG-Fe(II) oxygenase" /protein_id="YP_001897694.1" /db_xref="GI:187927207" /db_xref="InterPro:IPR005123" /db_xref="InterPro:IPR006620" /db_xref="GeneID:6286566" /translation="MLLKISAVLTKEQVAQCRATIDAAEWVDGKVTAGAQSGQVKHNM QLPEGSLAARQVGTLIQDALSANTLFFSAALPLKVFPPLFNRYAGGQTFGNHVDNAVR HLRGTAFRIRSDLSCTLFLTEPEDYDGGELVIDDTFGEHRVKLAAGDMVLYPSSSLHR VTPVVRGARVCSFFWLQSMVRSDAHRTLLFQMDTELQRLMGLLGQDDPSVIALTGTYH NLLREWADA" gene complement(115479..116249) /locus_tag="Rpic_0100" /db_xref="GeneID:6286567" CDS complement(115479..116249) /locus_tag="Rpic_0100" /note="PFAM: Sel1 domain protein repeat-containing protein; KEGG: bxe:Bxe_B0793 hypothetical protein" /codon_start=1 /transl_table=11 /product="Sel1 domain protein repeat-containing protein" /protein_id="YP_001897695.1" /db_xref="GI:187927208" /db_xref="InterPro:IPR006597" /db_xref="GeneID:6286567" /translation="MPADAATAAAAGATAADPAVVDAIHAVLTGPADRAARWLAAAAR RGHTEAQAIFGQWLLDGRGVERNPAEALFWFKTAALSGHAMAANMLGRCYEHGWGAPA CDKTATHWYARAADAGLDWGQYNYATRLQLGRGIPADRARAFALFQAAAAQGHAKSIN VLGGFYEDGWEVEADTAMALRCYLRAAAGGDFRGQFNAARLLALANHADDALGWMQAV PRTATPTFLAKAHDFLAGHPDVRLRALADVLKTPSLCC" sig_peptide complement(115479..115529) /locus_tag="Rpic_0100" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.621) with cleavage site probability 0.402 at residue 17" gene complement(116249..118528) /locus_tag="Rpic_0101" /db_xref="GeneID:6286568" CDS complement(116249..118528) /locus_tag="Rpic_0101" /note="TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bxe:Bxe_B0794 TonB-dependent siderophore receptor" /codon_start=1 /transl_table=11 /product="TonB-dependent siderophore receptor" /protein_id="YP_001897696.1" /db_xref="GI:187927209" /db_xref="InterPro:IPR000531" /db_xref="InterPro:IPR010105" /db_xref="InterPro:IPR012910" /db_xref="GeneID:6286568" /translation="MSAAQIERKRTEHSVVGYLTGAMSFAVVSAPALADTKKDAVSAT LPEQTVTGTNGFKADAASGGKFTAPLLDTPKSVTVIPAEVLQGTGSVTLTEALRTVPG IAFGAGEGGNPVGDRPFIRGYDAQASTFLDGLRDIGAQSREMFNVESVEVIKGPSGAY EGRGAAGGAVNILTKTPKLEHFTEGTLSVGNAAYKRATADGNYQIGEHAAFRLNAMAH DAAVAGRDVTSFSRWGIAPSIAVGLGTPTRATLSYYHLQSNDTPDTGIPYNNGTFNRR TDGRPQLFGPGDGAPVNVDRNVYYGLSRDFRRDRVDMGTFTLEHDVSSALKLRNTMRI ARTSQDTIWTQPDDSQGNIYYGMVWRRTNSRSSVANTVANQTEATGKFDTGGLKHSYA AGLEFSRERSSNDTYAVATGSNRCPNGIGAAGGYNCADLFNPNPNDPWAGGIRLNNNP AETTVRTQSAYVFDTVELSPRWQVNGGLRFDRYSASATTSANAQGVRSSFSRDDNLLN YQLGLVFKPAQNGSIYLAYGTSSTPSGSVAGQGADTSALTPDRSSNRGDVLAPEKNRA YELGTKWNVLDSKLALTAAIFRIETTNARIVQQDGTAAMAGNKRVDGFELGWSGALTN RWQVFGGYTYLKSELRNNGGAGAAFGGTNGTAFPNTPKNSFSLWTTYQPMPKLTLGGG AYYVSKVWGSANPANPKWVPAYWRFDAMAAYRIDKHTTLQLNVQNVFDKVYFNQAYAS HYASLAPGRTAILTLGIRY" sig_peptide complement(116249..116353) /locus_tag="Rpic_0101" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.982) with cleavage site probability 0.967 at residue 35" gene 118803..119582 /locus_tag="Rpic_0102" /db_xref="GeneID:6288206" CDS 118803..119582 /locus_tag="Rpic_0102" /note="Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase" /protein_id="YP_001897697.1" /db_xref="GI:187927210" /db_xref="InterPro:IPR001547" /db_xref="InterPro:IPR001753" /db_xref="GeneID:6288206" /translation="MSTDPELLIERRGQALWLTIQREDRRNAINAAVLEALTAALVDA GRDAAVRAVVLTGTGTRAFCAGADLQTGQSFRFDYSQPYQALADLFRQARRCTVPLIA RVNGACMAGGMGLLAMCDLAVASHSATFGLPEVKVGVFPAQVLAVLQHQLPRRVLNEL CLTGEPMNADRALAAGLVNEVTEPEALDGAVDALLARLVDKSPSAIRRGLYTLKHVES LSFEQAMAFTESQIGLFALTEDAQEGQAAFREKRAPNWRGR" gene 119584..121356 /locus_tag="Rpic_0103" /db_xref="GeneID:6288207" CDS 119584..121356 /locus_tag="Rpic_0103" /note="PFAM: protein of unknown function DUF1446; KEGG: reh:H16_B0988 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1446" /protein_id="YP_001897698.1" /db_xref="GI:187927211" /db_xref="InterPro:IPR010839" /db_xref="GeneID:6288207" /translation="MRNDTVSIGGASGFWGDSVTGPLQLVASGRLDFLVFDYLAELTM SLLASARMKNAELGYATDFVSVAMRAVLKDALAQNIRIIANAGGVNPRGCAAALQALA AELGVSVRIAVVEGDDVMALLPALRGEGVRELQSARPLPDKVVSANAYLGALPIKAAL DAGAQVVITGRCVDSAVTLGALMHAFEWRADDYDRLAAGSLAGHILECGCQGAGGLHT DWEAVPDWAHSGYPIAECRADGSFIVTKPDGTGGLVTTATVGEQLLYEIGDPARYVLP DVVCDFTHVTMTLAGEHRVEVRGARGRAPTPDYKVSATYADGYRATGQLTIVGIDADR KARHTAEAILERTRGLFRQLGLPDYSATHIETLGSAYLFGPHQPNVPRFESVMWLAVT HPNKQALDLFAREIAPAGTSWAPGTTGAGGRPSVVPAIKQYAFLIDKARVQARVTLLG EEGFDIAVPTGGAALEPSAAAQGSLALPPGPTREVSLIELAYARSGDKGDTSNIGVIA RRPEDLPLLRAQLTEDAVAAYLAHVVKGRVTRYDLPGIHALNFVCEQALGGGGMASLR NDPLGKGMAQVLLTMPVRVPVNHP" gene 121371..122525 /locus_tag="Rpic_0104" /db_xref="GeneID:6288208" CDS 121371..122525 /locus_tag="Rpic_0104" /note="PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: reu:Reut_B5206 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_001897699.1" /db_xref="GI:187927212" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="InterPro:IPR013107" /db_xref="GeneID:6288208" /translation="MLSGLLPSARFDADHDTFRETVRRFVDKAVLPHIDAWEEAETFP RALYREAADLGLLGIGFPEEYGGTPGDLFLELAMIEELTRAASGGLLASLFSHTIGAP PIVAGGSAELKARVLPAILSGEKISALAITEPSGGSDVASLTTRAVRDGDHYVVSGSK IFITSGMRADYITVAVRTGEAGAGGISVLLVEGDTPGLSRTPLKKMGWWCSDTAQLHF DNCRVPVGNLLGAENRGFELVMRNFNHERLALAMQAYGLARTCLIEAVEWATQRETFG KRLVQHQVARQKLVAMATRIEATRALLEDLMRRMQAGDSPVAQLCMLKNFATQSLQFC ADTAVQLLGGMGFMRGTKSERIYREVKVYMIGGGAEEVLSDLAARQLGWT" gene 122547..123434 /locus_tag="Rpic_0105" /db_xref="GeneID:6288209" CDS 122547..123434 /locus_tag="Rpic_0105" /note="PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rfr:Rfer_3507 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="YP_001897700.1" /db_xref="GI:187927213" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR013968" /db_xref="GeneID:6288209" /translation="MYRSVFRPGLFQGQVAVVTGGGSGIGRCTAHELASLGAAVALVG RNAEKLAAVRTEIVEAGGTAHAYVCNIRDEAAVQATVAQIYGEHGRIDALVNNAGGQF PSPLKDISAKGWEAVVQTNLTGGFLMARECLNQAMQQRGGAIVNIVADMWGGMPNMGH SGAARAGMVNFTETAAFEWAQYGVRVNAVAPGYVASSGMDAYPPWMAETIRSMPSTVP LGRFATEAEVSSAIVYLLSEAAAFITGTTLRVDGGRPNVRPGSPMPAPRHGAEPFNGF HLAVTPKVLQGEEDRHAGA" gene 123421..125040 /locus_tag="Rpic_0106" /db_xref="GeneID:6286546" CDS 123421..125040 /locus_tag="Rpic_0106" /note="PFAM: carboxyl transferase; KEGG: bps:BPSS2031 acetyl-CoA carboxylase carboxyltransferase" /codon_start=1 /transl_table=11 /product="carboxyl transferase" /protein_id="YP_001897701.1" /db_xref="GI:187927214" /db_xref="InterPro:IPR000022" /db_xref="InterPro:IPR011762" /db_xref="InterPro:IPR011763" /db_xref="GeneID:6286546" /translation="MPALESRIVPQSDAYRQNHAALTELVGRLRTLEDRTRDKSEASR ARFEQRGQLLPRDRLGRLLDAGAPFLELSTLAGFCLDHADPARSIPGGGFIAGIGWVS GVRAMIIVDDAGIDAGAVQPMGIEKFQRAQAIALEQKLPFIHLVESAGANLLTYRVET FIHGGSGFYWLARLSAAGIPVISVVHGSSTAGGAYMPGLSDYVVMVRDRARAFLAGPP LLKAATGEIATEEELGGAEMHATTSGLAEYLAEDDADALRIARELVAALDWNRDVPAP DRPYAPPRFDAEELLGIALTDHRKPLDMREVIARFADGSDFLEFKPDYGPGTITGHAA ICGMRVGVITNNGPLDPAGATKVVHFIQVCCQSDTPLLYLQNTTGFIVGKASEQAGMI KHGSKTIQAMANATVPRITVHCGASFGAGNYGMSGRGFFPDFCFSWPNAKTAVMGAEQ AAGTMATVMAASMQRKTQTVDHDAIEAMRAKVIDTFERQSDAFTVSGRLLDDGVIDPR DTRKVLACVLGVCDEARRRTLHPIQFGVARP" gene 125090..126247 /locus_tag="Rpic_0107" /db_xref="GeneID:6286547" CDS 125090..126247 /locus_tag="Rpic_0107" /note="PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: vei:Veis_1896 acyl-CoA dehydrogenase domain protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_001897702.1" /db_xref="GI:187927215" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="InterPro:IPR013107" /db_xref="GeneID:6286547" /translation="MHFTHEHQELQRNLKRFIDSDINPYVDEWEAAEMFPAKQLFKKM GELGFLGIAKPTEFGGLGLDYSYAMAMAETLGHIHCGGVPMAIGVQTDMATPALARFG SDELRAQFLAPAISGDAVACVGVSEPSAGSDVASIKTTARKDGDDYIINGSKMWITNS LQADWMCLLANTSDDPAHRNKSLIIVPMNTKGVSVGKKIRKIGMNSSDTGLIYFDDVR VPQRYRIGEEGKGFTYQMLQFQEERLWAAASSLATMTMCIETTAEYARERKLFGASLL DNQWVHFKLAELKTEVEALRALTYRACDLYIQGQDVTELASMAKLKAGRLARIVPDAC LQFWGGMGFTWDNPVSRYYRDGRLGSIGGGADEVMLGIICKYMNTLPGKKG" gene 126251..128245 /locus_tag="Rpic_0108" /db_xref="GeneID:6286548" CDS 126251..128245 /locus_tag="Rpic_0108" /note="PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: reu:Reut_B4460 biotin/lipoyl attachment:carbamoyl-phosphate synthase L chain, ATP-binding:carbamoyl-phosphate synthetase large chain, N-terminal:biotin carboxylase, C-terminal" /codon_start=1 /transl_table=11 /product="Carbamoyl-phosphate synthase L chain ATP-binding" /protein_id="YP_001897703.1" /db_xref="GI:187927216" /db_xref="InterPro:IPR000089" /db_xref="InterPro:IPR001882" /db_xref="InterPro:IPR003135" /db_xref="InterPro:IPR005479" /db_xref="InterPro:IPR005481" /db_xref="InterPro:IPR005482" /db_xref="InterPro:IPR011761" /db_xref="InterPro:IPR011764" /db_xref="GeneID:6286548" /translation="MTAPHAAFRSILIANRGEIALRIMRTARRLGMPTVAVYSDADRD APHCRAADLALPIGASQPQASYLNVAALLEAARKSGAQAVHPGYGFLAESDAFAGACA DAGLVFIGPPAGAIRAMGNKAGAKRLMEAAGVPCVPGYQGEDQSATRMADEAARIGYP VMIKAAAGGGGRGMRRVDRPEAFAAALQSARSEAENAFGSGELILEKAIVEPRHIEIQ VFADAHGNVVHLGERDCSVQRRHQKVIEESPSPAVSPELRARMGAVSVAAARAIGYVG AGTLEFLLAPDGAFYFMEMNTRLQVEHAVTEAIVGVDLVEWQLRVALGEPLPLAQDAI DARRAQGGHAIEVRLCAEDPQQNFLPQSGTVARWRAPGDVRTDHALADGLVVSPYYDS MLAKIVAHGTDRADACRRLAHALDDCLLLGLPTNRAFLRDCVAHPAFLSGDVSTAFID RHFPAAMRQAAVPDAAVCQAAAVLLTYLRQDTARRYPAELHGWASSRTYPTLCRFTLD GEAIDMRVRALGAQQWELAWDGGATQVAVVSAGDGRVTLALGDAFHAVDYAVTASACH FVLNGIEHTAIDTTYAKAERSGAQTGSGRISAPMNGRVVAVHVAEGEAVCAGQVLLVV EAMKMEHSIAAPLAGEVRGLFTQVGAQVAPGGLLMEIAAA" gene 128330..129916 /locus_tag="Rpic_0109" /db_xref="GeneID:6286549" CDS 128330..129916 /locus_tag="Rpic_0109" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: rpe:RPE_2253 AMP-dependent synthetase and ligase" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_001897704.1" /db_xref="GI:187927217" /db_xref="InterPro:IPR000873" /db_xref="GeneID:6286549" /translation="MSEATPDTALEANLLNRVTLGDTLHRSARKFGAKVALVDGARRM THGELNADSNRYAHALLASSLKPGDKVAMVCGNSAQFLVAAYGILKAGLVWVPINAML GPEDVRYILEHAEARHVVIDAALYPALRDTLATLGLPAHQCFGEPVADGPQPVEQALQ GHADTLPAVVIDDRDLALIMYTSGTTGRPKGAMHSHRSVHAALMSNVAGLNLNETDVF SCLLPMFHCAQFATAASAMMVGATLVIQRGFDPAALLDVIANERITQLFGLPLMYAAL LHHPLRAQRDLSSLRLCLYAMAPMARPLLERLIAEVCPNFALGSGQTEIFPMTMYFAP DQQLQRTGNYWGQPCMVNEAAVMDDQGNLLGPNQLGEIVHRGPNVMLGYYKDPQATAN ARRFGWHHTGDLGMWDADGQLQFKDRIKDMIKTGGENVPSVKVEEVLLRHPAVANAAV VGLPHAHWVEAVAAFVCLKPDAHADAAALQAHCRAHLGSFEVPKHIAVVDKLPMTATG KIQKHVLRSANQTLFEGEAR" gene complement(129923..130600) /locus_tag="Rpic_0110" /db_xref="GeneID:6287967" CDS complement(129923..130600) /locus_tag="Rpic_0110" /note="PFAM: regulatory protein TetR; KEGG: bpd:BURPS668_A2924 transcriptional regulator, TetR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_001897705.1" /db_xref="GI:187927218" /db_xref="InterPro:IPR001647" /db_xref="GeneID:6287967" /translation="MPKPATSNPPESATEAAPEAEAPRRKRGRPAQDANEGLRRALIE QSARLFREKGYGNTTVRDIAAATGVHAGSWFYYFKTKQDILQAVIEHGLTVALADIEA IDIEDLPPREAMRQLVRAHLHTILAPHQDFIPVMLYEWRSLDAQAQERIIALKDRYED IWTRVIDRLRASGEWAHPTPVDRLLMFGALNWTAQWYQAGAGISIDALADQAVLFILR TPPQPAA" gene complement(130662..131615) /locus_tag="Rpic_0111" /db_xref="GeneID:6287968" CDS complement(130662..131615) /locus_tag="Rpic_0111" /note="PFAM: beta-lactamase domain protein; KEGG: rso:RSc0258 putative beta lactamase protein" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="YP_001897706.1" /db_xref="GI:187927219" /db_xref="InterPro:IPR001018" /db_xref="InterPro:IPR001279" /db_xref="GeneID:6287968" /translation="MAEHDVVTLPNSMRVFERGWLSSNNILFFDDEAHGGCALVDSGY LTHAPQTVALVQHALRGRPLRRLLNTHLHSDHCGGNAALQALYGSHTRVPAAQIDDVR RWDTDALSYGPTGQECARFALPDSDADAGLSDGMTARLGGFDWQVISAPGHDPHAVIL FSPDTRVLISADALWERGFGVIFPELEGESGFAEQQAILERIVQLDALVVIPGHGRPF TNVNAAIDASLGRLAYLRADPERNALHAIRVLVKFKLLEQQALSHEALFAWFTQTTLM PRLHARFFAAQSMETLLDAAIAALVKAGAATVEHGRILNRD" gene complement(131628..131894) /locus_tag="Rpic_0112" /db_xref="GeneID:6287969" CDS complement(131628..131894) /locus_tag="Rpic_0112" /note="PFAM: protein of unknown function DUF1289; KEGG: rso:RSc0259 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1289" /protein_id="YP_001897707.1" /db_xref="GI:187927220" /db_xref="InterPro:IPR010710" /db_xref="GeneID:6287969" /translation="MDACTRAQLKRSLGKLRNSQPQAERAQPVASPCISVCKMDEARG LCIGCMRTIDEIASWSTMNDAARLAVWKTLPERACAWLNDAPCA" gene complement(131903..132403) /locus_tag="Rpic_0113" /db_xref="GeneID:6287970" CDS complement(131903..132403) /locus_tag="Rpic_0113" /note="PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rso:RSc0260 hypothetical protein" /codon_start=1 /transl_table=11 /product="YbaK/prolyl-tRNA synthetase associated region" /protein_id="YP_001897708.1" /db_xref="GI:187927221" /db_xref="InterPro:IPR007214" /db_xref="GeneID:6287970" /translation="MTATDTKAPLPESAQRVADHLRTLGYEKNIVMLPATGKTSAEAA AGLGCSVAEIAKSIIFRRAEDDVPVLVIASGTNRVDEAKVSAHVGALAKADAKFVREK TGYAIGGVCPVGHAVKPVMLLDQDLFQYDSLWAAAGHPHAVFNLTPAELEAMTGAPVA DIAQRD" gene complement(132426..133355) /locus_tag="Rpic_0114" /db_xref="GeneID:6288013" CDS complement(132426..133355) /locus_tag="Rpic_0114" /note="catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA" /codon_start=1 /transl_table=11 /product="hydroxymethylglutaryl-CoA lyase" /protein_id="YP_001897709.1" /db_xref="GI:187927222" /db_xref="InterPro:IPR000138" /db_xref="InterPro:IPR000891" /db_xref="GeneID:6288013" /translation="MSIPNFVKVVEVGPRDGLQNEKSPVSTDTKVELVNRLSEAGFVN VEAASFVSPKWVPAMADGADVMARIQRRPGTLYSVLTPNMKGFEGAAAAGADEIVIFS AASEAFAQKNINCTIAESIERFVPVAKAAKDAGIRVRGSISCSLGCPYQGEVPVSSVV DVIKRMADLGCDEIDIADTIGVGTAGRVKTVMEAAAATFPIDRLSGHFHDTYGQALAN ILASLEVGIAIFHASVAGLGGCPYAKGATGNVATEDVLYLLHGLGIRTGIDLDKVVLA GDFISQAIGRPTASRAGRALLLKLQDQIAQACI" gene complement(133357..134298) /locus_tag="Rpic_0115" /db_xref="GeneID:6288014" CDS complement(133357..134298) /locus_tag="Rpic_0115" /note="PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rso:RSc0262 putative 2-hydroxyacid dehydrogenase oxidoreductase protein" /codon_start=1 /transl_table=11 /product="D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding" /protein_id="YP_001897710.1" /db_xref="GI:187927223" /db_xref="InterPro:IPR006140" /db_xref="GeneID:6288014" /translation="MHIQIYTPDGKPQPWLDGFAQALPEARLSVWEQGAVQDADYAVV WQPPADMLRDRRDLRAVFNLGAGVDAILGLRAQAPDAIPEGLPIVRLDDAGMAAQMGE YVTHAVLRFFRRLDEYERQQQAKMWRFLKPFNRDEFVVGVLGLGVLGTHIARTLAGFG FPVRGWSRSAKHVEGVDCRSGSDALPGFLAGTRVLVNVLPLTADTENVIDAKLLAQLA PGAFVVNVARGKHVVEDDLLAAVRSGHIAGAALDVFRTEPLPADHPFWTEPRIHITPH ISALTLREVSIAQIARKIRALEAGEPIAGIVDLQRGY" gene complement(134385..136409) /locus_tag="Rpic_0116" /db_xref="GeneID:6288015" CDS complement(134385..136409) /locus_tag="Rpic_0116" /note="PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rso:RSc0265 probable acyl-CoA carboxylase alpha chain protein" /codon_start=1 /transl_table=11 /product="Carbamoyl-phosphate synthase L chain ATP-binding" /protein_id="YP_001897711.1" /db_xref="GI:187927224" /db_xref="InterPro:IPR000089" /db_xref="InterPro:IPR000115" /db_xref="InterPro:IPR003135" /db_xref="InterPro:IPR005479" /db_xref="InterPro:IPR005481" /db_xref="InterPro:IPR005482" /db_xref="InterPro:IPR011761" /db_xref="InterPro:IPR011764" /db_xref="GeneID:6288015" /translation="MITKLLIANRGEIACRVAATCRKLGIRTVAVYSDADANARHVAA CDEAIHIGEPAARDSYLRADRILEAARATGAQAVHPGYGFLSENEAFAKACADAGIIF VGPPASAIEAMGSKSAAKALMETAGVPLVPGYHGDNQDAAFLRTQADRIGYPVLIKAS AGGGGKGMRVVESGDAFEASLASVKREASSSFGDDRVLIEKYLTRPRHIEIQVFADSF GDAVYLFERDCSVQRRHQKVLEEAPAPGMTLDRRRAMGEAAVAAARAVGYVGAGTVEF IVDEDGTFYFMEMNTRLQVEHPVTEMITGEDLVEWQLRVASGEPLPRTQDELHIHGHA LEARIYAENPDRDFLPSIGTLKVLRTPAAVEFTVGAQANGEPAAVRIDAGVREGDAIS PYYDPMIAKLIVWGRDREEALARMLQALGSFHLVGLSSNVAFLRRLVASKPFATADLD TGLIARNHDTLFPAAPDVPLDAIALAVAALLAREARSLRTDTRDPHSPWARGSGWRLN GAAERTLRFTHGDQSIDATLIYGRYGSRLKVGGSEAPFTSQRHAETFTVTLGTHKATG QVHADGDTFHVFTGGAHWTLERHDPLAHAGEADDEGGKLTAPMPGKVIAVLAAPGQTV TKGAPLVVMEAMKMEHTLTAPANGVVESVLYGVGDQVTEGVQLLAFKPAE" gene complement(137071..138150) /locus_tag="Rpic_0117" /db_xref="GeneID:6288016" CDS complement(137071..138150) /locus_tag="Rpic_0117" /EC_number="2.8.1.6" /note="KEGG: rso:RSc0266 probable biotin synthase protein; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB" /codon_start=1 /transl_table=11 /product="biotin synthase" /protein_id="YP_001897712.1" /db_xref="GI:187927225" /db_xref="InterPro:IPR002684" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="InterPro:IPR010722" /db_xref="GeneID:6288016" /translation="MQSTPLNFVPNAAKAPVTPGQAPDARWSREAIEALFALPFNDLL FQAQQVHRANFDANAVQLSTLLSIKTGGCPEDCSYCPQSARYDTGVEAEKLMPIDAVL EAASRAKQNGASRFCMGAAWRNPKPHQLDAVADMVRGVKAMGLETCVTLGMLKQEQAA QLKEAGLDYYNHNLDTAPEFYGEIITTRTYQDRLDTLEHVRDAGINVCCGGIVGLGES VHERAGLIAELANMEPYPDSVPINNLVKVEGTPLAGNEELDPFDFVRTIAVARITMPK AMVRLSAGREAMDDALQALCFMAGANSIFYGEKLLTTDNPEADADRKLLARLGMRVEV QDHMHHESHVGAQSSHCHIDITPAD" gene complement(138194..138988) /locus_tag="Rpic_0118" /db_xref="GeneID:6289440" CDS complement(138194..138988) /locus_tag="Rpic_0118" /note="Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase" /protein_id="YP_001897713.1" /db_xref="GI:187927226" /db_xref="InterPro:IPR001753" /db_xref="GeneID:6289440" /translation="MNTFETLAFAQNGAVATLTLNRPDVRNAFNETVIAELTGAFRAL ADEPGVRAIVLTGNGPAFCAGADLNWMKKMAGYSDDENRADALRLAEMLRAIYTCPKP VIARVQGDTYAGGVGLVAACDIVVAVDTANFCLSEAKLGLIPATISPYVIRALGEQAS RRYFITAERFSAAEAHRLGLVHELVSADALDAKVADITAALVANSPNAVRESKRLVRE VSGAAVNDALLADTAERIAAIRASEEGREGVQSFLGKRKPNWLLPA" gene complement(138985..139923) /locus_tag="Rpic_0119" /db_xref="GeneID:6289441" CDS complement(138985..139923) /locus_tag="Rpic_0119" /note="KEGG: rso:RSc0268 hypothetical signal peptide protein" /codon_start=1 /transl_table=11 /product="conserved hypothetical signal peptide protein" /protein_id="YP_001897714.1" /db_xref="GI:187927227" /db_xref="GeneID:6289441" /translation="MNSNTARTWRSALAAVGCALLLAAAHASETAQSGISEIIVEVPK SAGIFTLKLETTVYKPAGDGPFPLIVLNHGKARGKAAFQARARYSEQAAALVARGYVV AIPMRQGFAKSGGAYIGSGCNVEANGIIQAEDVVATLDYMTAQPYVDRNRIVVMGQSH GGLTTLAFGTIAYPGVRGLVNFAGGLRNDTCVDWEGNLVRAFETYGRQSRYPSLWFYG DNDSYWPKPMPDRMFAAYTSAGGKGRLVDFGTFKSDSHGMFASHAGLGIWLPQVDAFL RELGLPAGPVQAVAPGSNAEASGADDPKSDTNKDPE" sig_peptide complement(138985..139068) /locus_tag="Rpic_0119" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.979 at residue 28" gene complement(139955..141562) /locus_tag="Rpic_0120" /db_xref="GeneID:6289442" CDS complement(139955..141562) /locus_tag="Rpic_0120" /EC_number="6.4.1.3" /note="PFAM: carboxyl transferase; KEGG: rso:RSc0269 putative propionyl-CoA carboxylase (beta subunit) protein" /codon_start=1 /transl_table=11 /product="Propionyl-CoA carboxylase" /protein_id="YP_001897715.1" /db_xref="GI:187927228" /db_xref="InterPro:IPR000022" /db_xref="InterPro:IPR011762" /db_xref="InterPro:IPR011763" /db_xref="GeneID:6289442" /translation="MPTLETKLNPRAEDFKANADAMRALVADLRDKVARIAQGGGDDA RAKHLARGKLLPRDRVQQLLDPGTPFLEFSQLAAYGMYDNAAPGAGIITGIGRISGQE CVIVCNDATVKGGTYYPMTVKKHLRAQEIAEQNHLPCVYLVDSGGANLPNQDDVFPDR DHFGRIFYNQANLSSKGIPQIAVVMGSCTAGGAYVPAMSDESIIVKEQGTIFLAGPPL VKAATGEVVSAEDLGGADVHTRLSGVADYFANNDSHALAQARSIVAHLNRRKPEQVQI HAPVEPRFPAEELYGVIPTDTRKPFDVREVIARIVDDSAFDEFKARYGTTLVCGFARI WGYPVGIIANNGILFSEAALKGAHFIELCCQRKIPLVFLQNITGFMVGRKYENEGIAK NGAKMVTAVATAQVPKFTVIIGGSFGAGNYGMCGRAYSPRFLWMWPNARISVMGGEQA ASVLATVRRDGIEAKGGQWSADEEAAFKAPIRDQYERQGHPYYASARLWDDGVIDPAD TRSVLGLGLSASLNAPIGDMNFGVFRM" gene complement(141591..142031) /locus_tag="Rpic_0121" /db_xref="GeneID:6289443" CDS complement(141591..142031) /locus_tag="Rpic_0121" /note="KEGG: rso:RSc0270 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897716.1" /db_xref="GI:187927229" /db_xref="GeneID:6289443" /translation="MPAAQTQPIGPADACPCGNGAYARCCGPFHAGEAVAATAEQLMR SRYSAYVLGDTAYLRRTWHPSTCPVDLETSEADAAATRWLGLDVRRHTPQDATHATVE FVARYKVGGRAHRLHETSRFVRLDASGAESAEGRWLYVDGTFPD" gene complement(142031..142720) /locus_tag="Rpic_0122" /db_xref="GeneID:6287788" CDS complement(142031..142720) /locus_tag="Rpic_0122" /note="TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rso:RSc0271 hypothetical protein" /codon_start=1 /transl_table=11 /product="HAD-superfamily hydrolase, subfamily IA, variant 3" /protein_id="YP_001897717.1" /db_xref="GI:187927230" /db_xref="InterPro:IPR005833" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006402" /db_xref="InterPro:IPR006439" /db_xref="GeneID:6287788" /translation="MTAVTSSVSNHPRFDAILFDCDGVLVDSEPIVNRLIWEMLIELG IDISLEDSIQRFLGKAIREELDAIAEMRGAPLPPNWLSTFQARRNVLLEAEVEAVPHI GHAIDVLSRLGLPMAVASGADRMKVELQLNRTGLIEHFQPTDVRIFSATEVARSKPAP DVYLLAASSLGVSPSRCLVIEDSPTGVTAGHAAGMTVLAYAGRNAPGPLIAAGATRTF TDMRELPELLA" gene complement(142784..143389) /locus_tag="Rpic_0123" /db_xref="GeneID:6287789" CDS complement(142784..143389) /locus_tag="Rpic_0123" /note="PFAM: DSBA oxidoreductase; KEGG: rso:RSc0273 putative 2-hydroxychromene-2-carboxylate isomerase protein" /codon_start=1 /transl_table=11 /product="DSBA oxidoreductase" /protein_id="YP_001897718.1" /db_xref="GI:187927231" /db_xref="InterPro:IPR001853" /db_xref="GeneID:6287789" /translation="MNGAIDFYFDFSSPYGYFASTRVEELAQRYNRATAWHPILLGVV FKTTGGSPLPQVPLKGDYAWRDFERTARFNGIEYRKPTHFPLPTQYAARATLWVHDHH GGDRAIDFARAVYRALFVDDINIGEPTEVMKIADAMGIDGAALNAGASSQQIKDQLKA EIDLAMSRGVFGSPYVIVDGEAFWGFDRFDQIEALLRDGRI" gene complement(143431..144561) /locus_tag="Rpic_0124" /db_xref="GeneID:6287790" CDS complement(143431..144561) /locus_tag="Rpic_0124" /note="PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RSc0274 putative acyl CoA dehydrogenase oxidoreductase protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_001897719.1" /db_xref="GI:187927232" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="InterPro:IPR013107" /db_xref="GeneID:6287790" /translation="MLLTQEQEMIRDAIRTFVREAIAPHAAAWDRDATFPKDVHRQLG ELGAYGVAVPEELGGAGLDYLSLALILEEIAAGDGGTSTVISVNNCPVCSMLMAFAND AQKQQWLVPLARGEMLGAFCLTEPHVGSDASALRTTAVRDGDHWVLNGVKQFITSGKH ADVAIVMAVTDKTAGKRGISAFLVPTNTPGYIVARLEDKLGQHSSDTAQIVFEDCRIP ADCLLGEEGAGYKMALSGLEGGRIGIAAQSVGMARAAFEAALAYAKERESFGQPLFAH QAVQFRLAEMATRVDVARQMVWHAASLKDAGLPCLKEAAMAKLNASEMAERVCSDAIQ VFGGYGYVSDFPVERIYRDVRVCQIYEGTSDIQKILIARALA" gene complement(144572..145285) /locus_tag="Rpic_0125" /db_xref="GeneID:6287791" CDS complement(144572..145285) /locus_tag="Rpic_0125" /note="PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rso:RSc0275 short chain dehydrogenase" /codon_start=1 /transl_table=11 /product="short chain dehydrogenase" /protein_id="YP_001897720.1" /db_xref="GI:187927233" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="GeneID:6287791" /translation="MTNATSRRTRTALILGASRGIGLETVKQYRADGWRVIATVRTQE AAHALQALGAETHVLDLTDANAVAGLAWKLDGEALDVAIYVAGIYGPRTQGATPVSQA DFDAVMHTNVWAPMGVLPAVLPMVEAGRNGADEPGGVLAVISSRMGSIGDMAGNGGWL YRASKAAVNAVLRGVSIDAKNATCLTFHPGWVQTDMGGADAAITPQESVAGIRRVIAG ATRADNGGFRNYDGSVIEW" gene complement(145295..146476) /locus_tag="Rpic_0126" /db_xref="GeneID:6289794" CDS complement(145295..146476) /locus_tag="Rpic_0126" /EC_number="2.3.1.9" /note="Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_001897721.1" /db_xref="GI:187927234" /db_xref="InterPro:IPR002155" /db_xref="GeneID:6289794" /translation="MSDRIVIASAARTPMGAFQGELASLTAPQLGAAAIRAAVERAGL KPEQIEEVIMGCVLPAGQGQAPARQAALGAGLPLSVGCTTVNKMCGSGMRAAMNAYDA LLAGSVDVVVAGGMESMTNAPYLIPKGRGGYRIGHGMIYDHMMLDGLEDAYDKGRAMG TFGEDCAEKYGFTREAQDHFAMTSVRRAQEATESGAFRWEITPVTVSSKAGDTVIDTD EGPRRIKVDKIPSLKPAFKKDGTVTAASSSSINDGAAALVMMRESTAKQLGITPLAVM LGHTTHAQAPGWFTTAPVTAIDKLFKKLDWNSGNVDLFEINEAFAVVPMAAMHDLHIP HEKVNVNGGACALGHPIGASGARVIATLLGALQHRGGKRGVASLCIGGGEATAVGIEL Y" gene complement(147143..147823) /locus_tag="Rpic_0127" /db_xref="GeneID:6289795" CDS complement(147143..147823) /locus_tag="Rpic_0127" /EC_number="4.2.1.1" /note="PFAM: carbonic anhydrase; KEGG: rso:RSc0277 probable carbonic anhydrase protein" /codon_start=1 /transl_table=11 /product="Carbonate dehydratase" /protein_id="YP_001897722.1" /db_xref="GI:187927235" /db_xref="InterPro:IPR001765" /db_xref="InterPro:IPR015892" /db_xref="GeneID:6289795" /translation="MPQRIKELFENNRKWVERVNAEDPAFFSNLANQQNPEYLWIGCS DSRVPANQIIGLPPGEVFVHRNIANVVVHSDLNCLSVLQFAVEVLKIRHITVVGHYGC SGVKAALTKQRFGLADNWIRHVRDVAEQHETYLGTVVREQDQHDRLCELNVIHQVNNV CLTTIVQDAWDRGQPLTVHGWIYGVKDGMLRNLGMAANSNEELHAQLADAWLNYGKEG SVPSPVGF" gene complement(147847..149682) /gene="aceK" /locus_tag="Rpic_0128" /db_xref="GeneID:6289796" CDS complement(147847..149682) /gene="aceK" /locus_tag="Rpic_0128" /EC_number="2.7.11.5" /note="catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol" /codon_start=1 /transl_table=11 /product="bifunctional isocitrate dehydrogenase kinase/phosphatase protein" /protein_id="YP_001897723.1" /db_xref="GI:187927236" /db_xref="InterPro:IPR010452" /db_xref="GeneID:6289796" /translation="MSHFPKLLSSQIAFDVARTMLDGFDKHYRLFREVSVQAKTAFET GDWAGLQQLQRDRIAYYDERVREASVILEDEYDAENIDDEIWRQIKLHFIGLLTNHHQ PECAETFFNSVCTRILHRSYFNNDFIFVRPAISTEYIENEESPTKPTYRAYYPGTRDG LGACFERIVHNFQLNAPFEDLERDIGYVVRAVGEHFGDFRIAPNFQIHVLSSLFFRNK AAYIIGRVINGDKTFPLAVPILRNAAGQLSLDTVLLRQEQLLILFSFTHSYFMVDMEI PSAYVTFLRDLMPRKPRAEIYTSLGLQKQGKNLFYRDFLHHLQHSSDKFIIAPGIKGL VMLVFTLPSYPYVFKVIKDYFPPPKETTRELIKSKYQLVKRHDRVGRMADTLEYSDVA FPLSRFDDDLIKELEKHAPSMVEYQRSEDGGEEIVIRHVYIERRMTPLNIWLHEGTDA QVEHGIIEYGNAIKELIAANIFPGDMLYKNFGVTRHGRVVFYDYDEIEYLTDCNIRTV PEPRTEEEEMSGEVWYNVGPHDIFPETYRTFLLGDPRVREAFLKHHADFFEASMWQGY KERLLSGQMHDFYAYDAAERFVNRYGASAPDNAAQDNTTLQRAAA" gene complement(149838..151019) /locus_tag="Rpic_0129" /db_xref="GeneID:6289797" CDS complement(149838..151019) /locus_tag="Rpic_0129" /note="PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RSc0279 probable acyl-CoA dehydrogenase oxidoreductase protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_001897724.1" /db_xref="GI:187927237" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="InterPro:IPR013107" /db_xref="GeneID:6289797" /translation="MIDLPGLKFDLGEDIEMLRSAVRDWAQGELAPRAGEIDRTDQFP MDAWRKMGELGVLGITVAEEYGGANMGYLAHMIAMEEISRASASVGLSYGAHSNLCVN QIHRNGTAAQKAKYLPKLVSGEWVGALAMSEPNAGSDVVSMKLRAELKGDRYVLNGTK MWITNGPDCDVLVVYAKTEPELGARGMTAFIVEKGMKGFSVAQKLDKLGMRGSHTGEL VFENVEVPVENILGQENGGTKVLMSGLDYERAVLSGGPIGIMQACMDVVTPYIHDRKQ FGQSIGEFQLIQGKMADMYTTLQACRAYLYTVGKNLDSLGRDHVRQVRKDCAGVILYT AEKATWMAGEAIQILGGNGYINEFPVGRLWRDAKLYEIGAGTSEIRRMLIGRELYAET M" gene complement(151197..151694) /locus_tag="Rpic_0130" /db_xref="GeneID:6289021" CDS complement(151197..151694) /locus_tag="Rpic_0130" /note="PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: rso:RSc0280 putative transcription regulator protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="YP_001897725.1" /db_xref="GI:187927238" /db_xref="InterPro:IPR000551" /db_xref="InterPro:IPR015358" /db_xref="GeneID:6289021" /translation="MSASTPSAAAALAADLESGDAGALADASFTITDLAREFDITPRA IRFYEDQGLLAPDRQGPGGRRRVYSAGERTRLKLTLRGKRLGLSLGEIKEILDLYESP RDTVPQLERFLASLAQHRAVLTQQLEDLNAQLAEIDQHERQCRRLLEDAQAGTVKPTK RRKAA" gene 151879..152958 /locus_tag="Rpic_0131" /db_xref="GeneID:6289022" CDS 151879..152958 /locus_tag="Rpic_0131" /note="PFAM: beta-lactamase domain protein; KEGG: rso:RSc0281 hypothetical protein" /codon_start=1 /transl_table=11 /product="beta-lactamase domain protein" /protein_id="YP_001897726.1" /db_xref="GI:187927239" /db_xref="InterPro:IPR001279" /db_xref="GeneID:6289022" /translation="MNALEHQLDYPFGDTLPEGGTRFEVAPGVYWLRMPLPFALDHIN LWLLRDRQDGQDGWTIIDCGINHEAIRGYWETIFANHLDGLPVLRVLVTHCHPDHVGL SNWLCEGGDEKRWNVRLWMSLGDYAFARMLVGGTGASNAGGEFAARHFERHGLTDPTS IEGIRNRKDYYSTLVPGVPSQYRRLMDGNVVTIGAHTWRVITGFGHAPEHVALYSEEA NVLISGDMVLPRISTNVSVFDLEPEADSLTLYLDSLGKYEPLPADVLILPSHGRPFRG LHTRIRQLRDHHADRLAETLAACKAAPQSARDIVNVIFKRQFDVHQMTFAMGEALAHL HALWHQGELVRETDADGIVRFHAAA" gene 152993..153379 /locus_tag="Rpic_0132" /db_xref="GeneID:6289023" CDS 152993..153379 /locus_tag="Rpic_0132" /note="PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rso:RSc0282 hypothetical protein" /codon_start=1 /transl_table=11 /product="Antibiotic biosynthesis monooxygenase" /protein_id="YP_001897727.1" /db_xref="GI:187927240" /db_xref="InterPro:IPR007138" /db_xref="GeneID:6289023" /translation="MADQHDVLDDSAVVLPFPAQTPTAPYYAVIFSSTRTDGDNGYGA MADRMVELGRSMPGFLGIESVRDELAGDQGRPGITVSYWSSLEAIREWKNQSDHLAAQ KLGREQWYASYHLRIAKVEYDYGFER" gene complement(153445..154290) /locus_tag="Rpic_0133" /db_xref="GeneID:6289024" CDS complement(153445..154290) /locus_tag="Rpic_0133" /note="KEGG: rso:RSc0283 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897728.1" /db_xref="GI:187927241" /db_xref="InterPro:IPR002491" /db_xref="GeneID:6289024" /translation="MTYTDAAGLAHAPVDTTPRIASLVPSITDLLFSLDLGDQLVART GFCIHPREAVRNVPKVGGTKTVKLDKLRELAPTHVIVNIDENTRPTVDKLREFIPHII VTHPCSPEDNLALYELLGGIFRREAQAQKLSDALTQELEALRGRHFLPHRVLYAIWQD PWMTVSRDTYISRMLKLVNCHTWPDDPAPVECGTNKSGDCARPNRPDTRYPTFRWSND VVRNIDCVLLSTEPYSFTEEHVDALEKQIGKPVYLVDGEMVSWYGSRAIDGVRYLGQF AKTLR" gene complement(154287..155087) /locus_tag="Rpic_0134" /db_xref="GeneID:6288028" CDS complement(154287..155087) /locus_tag="Rpic_0134" /note="PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc0284 short chain dehydrogenase" /codon_start=1 /transl_table=11 /product="short chain dehydrogenase" /protein_id="YP_001897729.1" /db_xref="GI:187927242" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR013968" /db_xref="GeneID:6288028" /translation="MSEIVFITGASSGIGQALARQYAAQGAMIGLVARRVDVLHEFVQ TLPAGIQSRCHCYAADVRSAESMRDVANAFIATVGLPDVVIANAGISVGTDLREPGDL KAFAVVMDTNWMGVLNTFQPFVGPMLARAKPGQPGGTLVGIASVAGVRGLPGAAAYSA SKSAVIKLMESLRVEFGPLGLRVVTIAPGYIRTPMTEHNPYPMPFLMPVDRFALKAVN AIHRGVRFTVLPWPMGMVAKLLHVLPRGLYDFAFARAGRKPRNPEISS" sig_peptide complement(154287..154346) /locus_tag="Rpic_0134" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.753) with cleavage site probability 0.743 at residue 20" gene complement(155200..155856) /locus_tag="Rpic_0135" /db_xref="GeneID:6288029" CDS complement(155200..155856) /locus_tag="Rpic_0135" /note="PFAM: DSBA oxidoreductase; KEGG: rso:RSc0285 probable thiol:disulfide interchange signal peptide protein" /codon_start=1 /transl_table=11 /product="DSBA oxidoreductase" /protein_id="YP_001897730.1" /db_xref="GI:187927243" /db_xref="InterPro:IPR001853" /db_xref="InterPro:IPR006662" /db_xref="GeneID:6288029" /translation="MKKLAAFLIALATGAGFLMTAPANAAPTAGKEYKVLQTPQPVPA GKIEVTEFFWYGCPHCYDFENTWTAWVAKQGKDVVIKRVPVAFNAKLEPHTRIYYTLE ALGKLDAKDASGKTLHDRVFDQLHKNYRSMSELDDIAKFMAANGVDEKQFRDTYNSFS VNANTKRAAQLADQYKIEGVPTVVVQGKYTTSPADAGSNVGAAQTLDYLVDQVRNRKM" sig_peptide complement(155200..155277) /locus_tag="Rpic_0135" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 26" gene complement(156017..156727) /locus_tag="Rpic_0136" /db_xref="GeneID:6288030" CDS complement(156017..156727) /locus_tag="Rpic_0136" /note="PFAM: Sporulation domain protein; KEGG: rso:RSc0286 hypothetical protein" /codon_start=1 /transl_table=11 /product="Sporulation domain protein" /protein_id="YP_001897731.1" /db_xref="GI:187927244" /db_xref="InterPro:IPR007730" /db_xref="GeneID:6288030" /translation="MARNTQFSRARSQRGGTFLGLVLGLIVGLAIAVVVAVYITKAPV PFVSRGGAQPKPSEAGNVVNTLPTPVQPAPQASAPQAADPNAPLWSRVPAKPVDQAAE QNNPPPGITIHPAQPGSVPQVASAPAVKPPKPPVTASNEKPVTDPIAEIARQDAAKTG YFLQVGAYKSPEDAERQKGNLAMQGFEAKVTQREVNGTTMYRVRLGPFNSLDEMTAVR GRLQSTGVESSVIRFARQ" sig_peptide complement(156017..156115) /locus_tag="Rpic_0136" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.983) with cleavage site probability 0.795 at residue 33" gene complement(156788..158578) /gene="argS" /locus_tag="Rpic_0137" /db_xref="GeneID:6288031" CDS complement(156788..158578) /gene="argS" /locus_tag="Rpic_0137" /EC_number="6.1.1.19" /note="catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="arginyl-tRNA synthetase" /protein_id="YP_001897732.1" /db_xref="GI:187927245" /db_xref="InterPro:IPR001278" /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR005148" /db_xref="InterPro:IPR008909" /db_xref="InterPro:IPR015945" /db_xref="GeneID:6288031" /translation="MLPSHKQTIAQLLSDAVGSLLPEGQARPEIVLERPKQAAHGDIA CNVALQLAKPLGTNPRELAGKIADAIRADARGQRLVAAVEIAGPGFINLRLSAAARAD VIAAVFAEGDRYGAANTHDGAPVLVEFVSANPTGPLHVGHGRQAALGDALASLLDWQG HKVHREFYYNDAGVQIHNLAVSVQARARGYKPGDANWPEAAYNGDYIADIAADYLAGK TVRASDGEPVTGERDVENIEAIRRFAVTYLRNEQDIDLQAFGVKFDRYYLESSLYTEG KVQQTVDALVAAGKTYEQEGALWLRTTDDGDDKDRVMRKSDGAYTYFVPDVAYHTTKW GRGFTQVINVQGSDHHGTIARVRAGLQGLNIGIPKGYPDYVLHKMVTVMKDGAEVKIS KRAGSYVTVRDLIEWSNGDAESEAGVDTIRACVEAGEPNWPARFTRGRDAVRFFLLSR KADTEFVFDVDLALKQSDENPVYYVQYAHARICSVFERAGVDAASLTSADLAAVTGPD VSPQATALVQRLAAFPDMLADAARELAPHAVAFYLRDLAGDFHAFYNADRVLVDDEAV KRARLALLAATRQVLRNGLAVIGVSAPQKM" gene 158753..159076 /locus_tag="Rpic_0138" /db_xref="GeneID:6288647" CDS 158753..159076 /locus_tag="Rpic_0138" /note="PFAM: Domain of unknown function DUF1840; KEGG: rso:RSc0288 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897733.1" /db_xref="GI:187927246" /db_xref="InterPro:IPR014991" /db_xref="GeneID:6288647" /translation="MITFTSHASQKFSMQKDLAMVLLGVIGKTLGERGVITPEEMPHA IDRLKRAIKDDTHQAHIKVAELSAAELDENGEEEPPHLGQRAYPLLHMLEESLVEQSS VLWGV" gene complement(159205..159762) /locus_tag="Rpic_0139" /db_xref="GeneID:6288648" CDS complement(159205..159762) /locus_tag="Rpic_0139" /note="PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: reu:Reut_A2901 rubrerythrin:ferritin and Dps" /codon_start=1 /transl_table=11 /product="Ferritin Dps family protein" /protein_id="YP_001897734.1" /db_xref="GI:187927247" /db_xref="InterPro:IPR002024" /db_xref="InterPro:IPR003251" /db_xref="InterPro:IPR008331" /db_xref="InterPro:IPR009040" /db_xref="InterPro:IPR014035" /db_xref="GeneID:6288648" /translation="MSRTNVAAPSESSFLTDIKTLRERARKHIEEGAVTEDYKADRET VLRLLNEALATELICVLRYRRHHFMAKGINAEPIAAEFLVHANEEQAHADSIATRIVQ LGGEPNFNPEGLSTRSHSEYVEADGLVDMIKENLVAERIAIDSYLEMIRYIGDRDPTT RRVLEQILAVEEEHADELSDMLHDQ" gene complement(159796..160224) /locus_tag="Rpic_0140" /db_xref="GeneID:6288649" CDS complement(159796..160224) /locus_tag="Rpic_0140" /note="KEGG: reu:Reut_A0125 protein of unknown function DUF883, ElaB" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF883, ElaB" /protein_id="YP_001897735.1" /db_xref="GI:187927248" /db_xref="GeneID:6288649" /translation="MSLFASHRVRSRIDDVNDRAHRAMNSASDAVDHARYAARPAVED VQSLLRSLENAIHTLTDEGSAEADRASRTLHARADQLRRAANERAHQARERMDWALDR TEETITAAPFKSVGVAVAIGAAIGLVVALAGGSSRRDASE" gene complement(160369..160542) /locus_tag="Rpic_0141" /db_xref="GeneID:6288650" CDS complement(160369..160542) /locus_tag="Rpic_0141" /note="PFAM: protein of unknown function DUF1328; KEGG: cak:Caul_4145 protein of unknown function DUF1328" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1328" /protein_id="YP_001897736.1" /db_xref="GI:187927249" /db_xref="InterPro:IPR009760" /db_xref="GeneID:6288650" /translation="MLKWALIFAIISLVAGVLGFTGIAAGAASIAKVLFFIFVVLFVL FLVLGVTVFKAVD" sig_peptide complement(160369..160449) /locus_tag="Rpic_0141" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.583 at residue 27" gene 160751..162208 /locus_tag="Rpic_0142" /db_xref="GeneID:6288354" CDS 160751..162208 /locus_tag="Rpic_0142" /note="PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rso:RSc0289 transmembrane sensor kinase VsrA transcription regulator protein" /codon_start=1 /transl_table=11 /product="multi-sensor signal transduction histidine kinase" /protein_id="YP_001897737.1" /db_xref="GI:187927250" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR007891" /db_xref="InterPro:IPR011712" /db_xref="GeneID:6288354" /translation="MGLHAMRSSLRSTLLLAGGILLTLGVLIASETGNIRLSQGYRQV IQSQQAETAINELLAELVNAEAGQRGFLLTGKDEYLDPYNKAIPHIHALMAEIRDHYA NDPDALKLFSETALQVSRKLTEMELTLIYGKRDLEVALDLVRTDFGKASMEAVRQGLD RLRQREIATVARSLEHAERDLALSRYGIALITAVNIILLVVLGMQHAKRLAVTERERD MAEEESQKLDRMVRERTRQLSDLAAHLQRVTEDEKTRLARELHDELGAILTATKMDLH WLRSRIHANEPAVSEKITRVMAHVDQGIQIKRRLIEDLRPTILLNLGLVEALSQLTED VGTRNGWHTEVSLPDDMPKLTDDAAIALYRIVQESLTNASKYAHATTVSVALDVGEEG VRLRVRDNGRGFPADIERRRMVGHHGLLGMEQRAIALGGTLVIDSMPGGGVTIIVELP PSDAVFDRGAANEPSGMQALTGGIAPAPGRGGATV" sig_peptide 160751..160840 /locus_tag="Rpic_0142" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.985) with cleavage site probability 0.945 at residue 30" gene complement(162293..162433) /locus_tag="Rpic_0143" /db_xref="GeneID:6288355" CDS complement(162293..162433) /locus_tag="Rpic_0143" /note="PFAM: Entericidin EcnAB; KEGG: rso:RSc0290 probable entericidin precursor lipoprotein" /codon_start=1 /transl_table=11 /product="Entericidin EcnAB" /protein_id="YP_001897738.1" /db_xref="GI:187927251" /db_xref="InterPro:IPR012556" /db_xref="GeneID:6288355" /translation="MKTLCAALAVTCMFLAGCNTMAGAGKDIQTGGQKLENSADNAKQ KM" sig_peptide complement(162293..162361) /locus_tag="Rpic_0143" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.890 at residue 23" gene complement(162504..162944) /locus_tag="Rpic_0144" /db_xref="GeneID:6288356" CDS complement(162504..162944) /locus_tag="Rpic_0144" /note="PFAM: response regulator receiver; KEGG: rso:RSc0291 putative transcription regulator protein" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_001897739.1" /db_xref="GI:187927252" /db_xref="InterPro:IPR001789" /db_xref="GeneID:6288356" /translation="MLDQAVTLSARGLRVLLIEDSPVLRGMVLEYLKASAFVATVEWA DTEDLALGLLGQGHYDVVIVDLQLRQGNGFKVLQTLRDQASPSVRIVYTNHAQVPTYR QRCFEAGANYFFDKSLELDKVFEVIEERAGVGRPRPQPAQHFHP" gene complement(163047..163679) /locus_tag="Rpic_0145" /db_xref="GeneID:6288357" CDS complement(163047..163679) /locus_tag="Rpic_0145" /note="PFAM: regulatory protein LuxR; response regulator receiver; KEGG: rso:RSc0292 response regulator transcription regulator protein" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, LuxR family" /protein_id="YP_001897740.1" /db_xref="GI:187927253" /db_xref="InterPro:IPR000792" /db_xref="InterPro:IPR001789" /db_xref="GeneID:6288357" /translation="MIRVLIADDHEIVRAGLRQFLSEERDIEVAGEAASGEEVMEQLR TGAFDVVVLDISMPDRNGIDTLKLARQRHPDLPVLILSTFPEDQYAINLIRAGASGYL TKESAPDELVKAIRTVSQGRRYVSPTVAELLIGGLEKPTDQPLHQTLSKREFQIFCKL ARGQSVSIIAEELFLSVKTVSTYRTRILEKMGMKSNADLTYYAIKNGLVE" gene complement(163990..164403) /locus_tag="Rpic_0146" /db_xref="GeneID:6288828" CDS complement(163990..164403) /locus_tag="Rpic_0146" /note="KEGG: rso:RSc0293 hypothetical signal peptide protein" /codon_start=1 /transl_table=11 /product="conserved hypothetical signal peptide protein" /protein_id="YP_001897741.1" /db_xref="GI:187927254" /db_xref="GeneID:6288828" /translation="MNKLLISLSAIAIAAASAYANAQTPSAGVSLQSNGTAAVAPAQG NAGVGLKADTGAKLDTESAKSQLNTKAEHGAKAAHEHKAKTEAGVDKTADKVGKSVSK TEKSAEKSGKAAKADTGAGLSADAGANAAATTQTK" sig_peptide complement(163990..164058) /locus_tag="Rpic_0146" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.916 at residue 23" gene complement(164645..167362) /locus_tag="Rpic_0147" /db_xref="GeneID:6288829" CDS complement(164645..167362) /locus_tag="Rpic_0147" /EC_number="2.1.1.13" /note="KEGG: rso:RSc0294 probable 5-methyltetrahydrofolate--homocysteine methyltransferase (methionine synthase, vitamin-B12 dependent isozyme) protein; TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; Vitamin B12 dependent methionine synthase activation region; cobalamin B12-binding domain protein" /codon_start=1 /transl_table=11 /product="methionine synthase" /protein_id="YP_001897742.1" /db_xref="GI:187927255" /db_xref="InterPro:IPR000489" /db_xref="InterPro:IPR003759" /db_xref="InterPro:IPR004223" /db_xref="InterPro:IPR006158" /db_xref="InterPro:IPR011822" /db_xref="GeneID:6288829" /translation="MTDHPMRLSGLEPFNIGESTLFVNVGERTNVTGSKAFARMILNS QFDEALAVARQQVENGAQVIDINMDEAMLDSKAAMVRFLNLIASEPDIARVPIMIDSS KWDVIEAGLKCVQGKAIVNSISLKEGEEQFAHHAKLIKRYGAAAVVMAFDEQGQADTY ARKTEICKRSYDFLVNKVGFAPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKQN LPYAKVSGGVSNVSFSFRGNDVVREAIHTVFLYYAIQAGMDMGIVNAGQLGVYENLDP ELRDRVEDVVLNRRPDATDRLLEIADRYKGGGTKREENLAWRQEPVEKRLAHALVHGI TDYVVEDTEEVRQKIFAAGGRPIQVIEGPLMDGMNIVGDLFGAGKMFLPQVVKSARVM KQAVAHLIPFIEEEKRKIAAAGGDVRSRGKIVIATVKGDVHDIGKNIVTVVLQCNNFE VVNMGVMVPCNDILAKAKVEGADIIGLSGLITPSLEEMAYVASEMQRDEYFRVKKIPL LIGGATTSRVHTAVKIAPNYEGPVVYVPDASRSVSVASSLLSDEGAARYVEELHADYD RIRTQHANKKATPMVSLAAARANKTKIDWSNYTPPKPKFIGRRVFRNYDLNELAQYID WGPFFQTWDLAGKFPDILNDEIVGESARRVFSDGKSMLARLIAGRWLTANGVIALLPA NTVNDDDIEIYTDESRSEVALTWRNIRQQSERPIIDGVMRPNRCLADFIAPKDTGIAD YIGLFAVTGGIGVEKREKQFEADNDDYSAIMLKALADRFAEAFAECLHARVRRDLWGY APDETLDNDALIREEYKGIRPAPGYPACPEHTVKRDMFRVLDAQEIGMDLTEALAMTP AASVSGFYLSHPDSTYFTLGKIGQDQVDDMIARSGEDRAFVERALAPNL" gene complement(167380..167733) /locus_tag="Rpic_0148" /db_xref="GeneID:6288830" CDS complement(167380..167733) /locus_tag="Rpic_0148" /note="PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aav:Aave_3654 glyoxalase/bleomycin resistance protein/dioxygenase" /codon_start=1 /transl_table=11 /product="Glyoxalase/bleomycin resistance protein/dioxygenase" /protein_id="YP_001897743.1" /db_xref="GI:187927256" /db_xref="InterPro:IPR004360" /db_xref="GeneID:6288830" /translation="MKARIDSTIPVLASLDLQESARFYTERLGFTQALIADDYLIVQR DGTEIHFWLCDDRRIAEHTSCYLRVPSTQALFEEFTARGLELAPPAVRPWGMKELYVI DPHGNLLKLGEYAPA" gene complement(167735..168775) /locus_tag="Rpic_0149" /db_xref="GeneID:6288831" CDS complement(167735..168775) /locus_tag="Rpic_0149" /note="PFAM: homocysteine S-methyltransferase; KEGG: rso:RSc0295 probable 5-methyltetrahydrofolate--homocysteine methyltransferase (methionine synthase, vitamin-B12 dependent isozyme) protein" /codon_start=1 /transl_table=11 /product="homocysteine S-methyltransferase" /protein_id="YP_001897744.1" /db_xref="GI:187927257" /db_xref="InterPro:IPR003726" /db_xref="GeneID:6288831" /translation="MTAPLPYTRAANLPALLRERILILDGAMGTMIQRYKLNEAQYRG ERFANHPIDVKGNNELLLLTRPDVIREIHEQYLAAGADLIETNTFGATTIAQEDYKMA ELAYEMNVVAARLAREACDKYSTPDKPRFVAGAFGPTPKTASISPDVNDPGARNVSFD QLRDAYYEQGKALLEGGADVFLVETIFDTLNAKAALFAIDQLFEDTGERVPVMISGTV TDASGRILSGQTVEAFWNSLRHAKPITFGLNCALGAALMRPYIAELAKICDTAVSCYP NAGLPNPMSETGFDETPEVTSSLVDEFASAGLVNLVGGCCGTTPEHIKAIADRVANRK PRAWPGQYLEAA" gene 168927..169319 /locus_tag="Rpic_0150" /db_xref="GeneID:6287137" CDS 168927..169319 /locus_tag="Rpic_0150" /note="PFAM: Rhodanese domain protein; KEGG: rso:RSc0296 hypothetical protein" /codon_start=1 /transl_table=11 /product="Rhodanese domain protein" /protein_id="YP_001897745.1" /db_xref="GI:187927258" /db_xref="InterPro:IPR001763" /db_xref="GeneID:6287137" /translation="MQLLDPPDAHAFLERTPAALFVDCRSEMEHLFVGHPAGAHHVSW NDGPHWEVNPEFVPTVRKLTGHGIERPVVLICRSGNRSAAAAHALEEAGFRDVYVVRH GFEGDLDSTRHRNTLNGWRHAGLPWEQC" gene complement(169433..169690) /locus_tag="Rpic_0151" /db_xref="GeneID:6287138" CDS complement(169433..169690) /locus_tag="Rpic_0151" /note="KEGG: rso:RSc0297 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897746.1" /db_xref="GI:187927259" /db_xref="GeneID:6287138" /translation="MQMIYNSDNYCVVEFGVDGQHAMLSAGGYEIVDKNLKREIFLGG ELAEHFREDVKKLIASEPTVEEVDDFLGKFDTVMTQPVTMH" gene complement(170010..170849) /locus_tag="Rpic_0152" /db_xref="GeneID:6287139" CDS complement(170010..170849) /locus_tag="Rpic_0152" /note="PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc0298 probable B-ketoadipate enol-lactone hydrolase protein" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold" /protein_id="YP_001897747.1" /db_xref="GI:187927260" /db_xref="InterPro:IPR000073" /db_xref="InterPro:IPR003089" /db_xref="GeneID:6287139" /translation="MDTNALSDSGTVHANHIDIHHRTEGADGPWVVLAHALGVDHQLW DSAARRLASRYRVLRYDARGHGKTSAPHGPYTLFQMADDVAGLLDALSIGQVHFVGLS MGGMVGQVLGVRHAQRLLSLTLCDTVCYTPASAHVMWDERIGQVEAHGMSGIVEPTIQ RWLTTPFREAHPDVVERIRGLLRATQPHGYVGTCLAIKALDTRSALARIACPTLVMTG DQDTGAPVEAAREIATHIPDARLKVIPHAAHLAPIEQEEGFLADLDEFLGHAGCGSQC DTP" gene complement(170851..171933) /locus_tag="Rpic_0153" /db_xref="GeneID:6287140" CDS complement(170851..171933) /locus_tag="Rpic_0153" /note="KEGG: rso:RSc0299 putative proline-rich signal peptide protein" /codon_start=1 /transl_table=11 /product="putative proline-rich signal peptide protein" /protein_id="YP_001897748.1" /db_xref="GI:187927261" /db_xref="GeneID:6287140" /translation="MQPRRRRFYRLGRFGLVLLAVLVLHVVAVVWIARSRQVTWPPAP EQIIPALLLHPEPVQPPPPPAAPKLRPAPPRPRSQTPPAPAPTPTSPAPDLASMDPSE FTSAGAQASGDTGVVKDLSGEGPGGPPAPPGDAFSLPPSTTLRYATYVNGVRNEDGVI RWATDGKSYTLAVEIPLPLFFGKLAFRSAGTVGPYGLTPARYEEERGRRQPDVTTFHY ATDSIPASGAQSAPTVTFTRSPAVLPLPEGTQDRFSVFLQLTGLARGGPARIASPGLT LEFPIADTDSVEVARVQHVGEETIDTPNGTIRAQHFIRLPRRADDKRRVEIWLSPDRG WLPVRLRQTEPNGMQFDLVYQSQEGG" sig_peptide complement(170851..170937) /locus_tag="Rpic_0153" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.980) with cleavage site probability 0.885 at residue 29" gene complement(171953..172831) /locus_tag="Rpic_0154" /db_xref="GeneID:6289304" CDS complement(171953..172831) /locus_tag="Rpic_0154" /note="PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: rso:RSc0300 probable transcription regulator protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, IclR family" /protein_id="YP_001897749.1" /db_xref="GI:187927262" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:6289304" /translation="MTMPPLPADTDLDLEPDADGELDAPARSGIQSIEVGFRLLEVLT HTTGPMMLRDLARAAPMNPAKAHRYLVSFARLGLVTQTPEGRYDLGPFALEMGLVSLN RQDPMRRARPAAAALRDEIDHTVGLAVWGNQGPAIVHWEEASHPVTVSLRLGDVMPML NSATGRVFGAYLPRAQTRSFIQRELDRIAAQGESADSENPELPQTLEAYDAICADVRL RGVSRIHGGVLPGINAMSLPVFDANGQLCLVLIALGAQSTFDTTWSSPLERRLRLAAQ QLSADLGYVAPNAPQC" gene 172908..173900 /locus_tag="Rpic_0155" /db_xref="GeneID:6289305" CDS 172908..173900 /locus_tag="Rpic_0155" /note="PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rso:RSc0301 hypothetical protein" /codon_start=1 /transl_table=11 /product="fumarylacetoacetate (FAA) hydrolase" /protein_id="YP_001897750.1" /db_xref="GI:187927263" /db_xref="InterPro:IPR002529" /db_xref="GeneID:6289305" /translation="MKLATLKDGSRDGQLAVVSRDLKTAHFATHIAGTLQRALDDWAF HAPQLQDLYDQLNAGRARHPFAFDAANCMAPLPRAYQWADGSAYLNHVELVRKARGAE MPPEFWTDPLMYQGGSDDLAGAHDPIVCRSEAFGIDFEAEVAVITGDVPMGTEAAAAA EGIRLIVLANDVSLRNLIPAELGKGFGFFQSKPATSFSPVAVTPDELGDAWRERKVHL PMTVRWNNKKVGQPECGTDMVFDFGQLIAHICKTRNVRAGSIVGSGTISNVDRSKGYA CIAEKRMLETIESGAPITEYMRYGDTVKIEMFDANGVSIFGAIDQEVVAPGTQA" gene complement(173909..174817) /locus_tag="Rpic_0156" /db_xref="GeneID:6289306" CDS complement(173909..174817) /locus_tag="Rpic_0156" /note="PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: rso:RSc0302 probable transcription regulator protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, IclR family" /protein_id="YP_001897751.1" /db_xref="GI:187927264" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:6289306" /translation="MPIDAPLPPVTSPHELAAEDATPERTSAGIQSAEIALSVLSAMA HAGGAHAVSELGRQLGMPRAKVHRYLVSLERMGFVEQDPASARYRLGAQALQVGLSAL SDVDFVREGSNLLPKLAERLNESVFLSIWTARGPVIVRWEDSGRPVAVNVRVGSVMPL LNSATGQACAAWVPEIQIVSLIDRELRGPGAGKAGLTDWLNCRARWQAVRQEGVARIG GTLVHGIDSVAVPVLDSQGKLAGAITALGLSSVFDSSLEGPAARLLREAGRTLSLRLG YHGQALMAGAAAPKRGRRPRTTPESA" gene 174921..175925 /locus_tag="Rpic_0157" /db_xref="GeneID:6289307" CDS 174921..175925 /locus_tag="Rpic_0157" /note="PFAM: Luciferase-like monooxygenase; KEGG: sso:SSO1532 hypothetical protein" /codon_start=1 /transl_table=11 /product="Luciferase-like monooxygenase" /protein_id="YP_001897752.1" /db_xref="GI:187927265" /db_xref="InterPro:IPR016048" /db_xref="GeneID:6289307" /translation="MKLSIFSVQDHYPDRPRSLPQLYADVIAQARHAEALGYDTFWVA EHHFHEYGAVPNPAVFLSHLAAQTQRLRLGTAISILTFHHPATVAENYAMVDALSGGR LSLGVGSGYLKHEFEGYDVDPAIKRERFDEALMLVERLLAGERVHHAGQFHTLRDVRL NVLPVQARVPIHVAILRREAAYHIGRQGRRMLFVPYASVESFEDIRTLMDEYRRGLAE AGIADTRGMAAVALHTHVGPTEAAVRATAADAFDLYVATRLYARRQTYDDVLASGLSL FGTPDAVAEKLAQLSDMGVDHVMALHNFGLMPQSAVLESMRALVEDALPRAGITALAA" gene 176010..177173 /locus_tag="Rpic_0158" /db_xref="GeneID:6288009" CDS 176010..177173 /locus_tag="Rpic_0158" /note="PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_A4234 ABC branched chain amino acid family transporter, periplasmic ligand binding protein" /codon_start=1 /transl_table=11 /product="Extracellular ligand-binding receptor" /protein_id="YP_001897753.1" /db_xref="GI:187927266" /db_xref="InterPro:IPR001828" /db_xref="GeneID:6288009" /translation="MQRPKWRHAGVLAGLALLSSAALADIRVGVTVSATGPQASLGQP EKNATTLWPSEIGGEKVDVIVLDDASDTTRAVTNTRKLMSESNVDVIVGSSTTPNTLA MIDAAAEGKTPVISLASSARLIEPMDAKRRWIFKTPHSDSHMASLIAEHAAAHGVKTI AYIGFANALGEAFLTEVQRFADLKHIRVTDTERFSPTDNSVTAQVLHLLANKPDAVVI GGSGTPAALPARALAERGYTGKIYFNHGVSNNDFVRLCGKDCEGAYVPTGPVMVAAEL PDTNPAKRQALDFARRYEATFGRGSVSIFAAYTGDIGLLLQRAVPVALKRAKPGTPAF REALRDALEQVHDLPTSTGVVNMSPQDHVGLDQRARVMAQIRRGQWHLADAAK" sig_peptide 176010..176084 /locus_tag="Rpic_0158" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 25" gene 177254..178072 /locus_tag="Rpic_0159" /db_xref="GeneID:6288010" CDS 177254..178072 /locus_tag="Rpic_0159" /note="Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase" /protein_id="YP_001897754.1" /db_xref="GI:187927267" /db_xref="InterPro:IPR001753" /db_xref="GeneID:6288010" /translation="MTSLAPRFARYQALTLIQHGPILEIVMGAAQSANRKLSTADAGL HRELAEIWRDVSAEPSVRVALIRGEGKGFSAGGDLHLVEQMADDFDVRTRVWHEARDL VYNVINCDKPIVSAMHGPAVGAGLVAGLLADISIAAKDARIVDGHTRLGVAAGDHAAI VWPLLCGMAKAKYYLLLCESMTGEEAERIGLISLAVPESELVNRAFEVAERLAAGSQT AIRWTKYALNNWLRLAGPSFDTSLALEFMGFAGPDVREGIASLRQKRPPTFDGA" gene 178129..179022 /locus_tag="Rpic_0160" /db_xref="GeneID:6288011" CDS 178129..179022 /locus_tag="Rpic_0160" /note="KEGG: rso:RSc0305 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897755.1" /db_xref="GI:187927268" /db_xref="GeneID:6288011" /translation="MFTQMPNFAEGGFDFLRKLWGGGFSGMAGGGMPNMASFAAPPMD LEEIDKRIHDLRAVESWLQLNASLLRTAIQGLEVQRATLVALQTFGSALSPEAMKSAF DGLTPSASSSSSSSSSGEESKPAWPHTAATAKPDDEPPPEDEDEAEEDTDDDQAEARA EAAHAQAQAAAQAQAAARAAAAALDPSPWWNMLQQQFNQIASSAAAAMPMPQNLMPGF PGGFPGFGGAPGAEGLDAAPEDIEEPTAPAKPKRAAAKAMPKPAAKASAGRTAKPATK KTAAKKAPAKSVPRKPTNDTP" gene 179053..180210 /locus_tag="Rpic_0161" /db_xref="GeneID:6288012" CDS 179053..180210 /locus_tag="Rpic_0161" /note="PFAM: Patatin; KEGG: rso:RSc0306 hypothetical protein" /codon_start=1 /transl_table=11 /product="Patatin" /protein_id="YP_001897756.1" /db_xref="GI:187927269" /db_xref="InterPro:IPR002641" /db_xref="GeneID:6288012" /translation="MMGGGARAAYQVGVLRGIAGLAREYAPGVARTPFDVICGTSAGA INSLGLARGAQDFTLATEALTQLWGTLHADRVYRTDVGRVGSSGARWLTALAFGWMTG HTPRALFDNTPLRELLESQHDGEQVQAAFDAGALRALAITALSYTTGRHVTFYQSPHV VLPWRRSQRIAVSDEIGVSHMLASSSIPFVFPAEPVPLEGNDEWFGDGTMRQMSPLSP AIHLGANRILVVGAASRSQPGWYDTVPASGYPSLAQIAGQALASIFLDGLSADIERLQ HVNAMVARNPEIADARDGWRKIEVLVMAPSERIELIASRHVQRLPGTVRALLKPLGGT EARGAAFASYLLFEPEFTQELIDLGERDVQARRDELAAFLYGAIPDTMRAA" gene complement(180211..180906) /locus_tag="Rpic_0162" /db_xref="GeneID:6289810" CDS complement(180211..180906) /locus_tag="Rpic_0162" /note="PFAM: glutathione peroxidase; KEGG: rso:RSc0307 putative glutathione peroxidase transmembrane protein" /codon_start=1 /transl_table=11 /product="glutathione peroxidase" /protein_id="YP_001897757.1" /db_xref="GI:187927270" /db_xref="InterPro:IPR000889" /db_xref="GeneID:6289810" /translation="MLFPATVSMRRPRLQLHASGVLRRHHLLMIAIAIAIAVIALLLP RTGHAVTAGVAPAAQTPTTPGACPASLNFRVKRLQDDAPQDLCQYAGRVVLVVNTASY CGYTHQYEGLEALYAKYRDKGLTVLGFPSNDFQQEPGNSKQIADFCYNTYGVKFPMFS KTAVVGAGASPLYAWLATQTGQPPKWNFHKYLLDRTGRVAAVFPSSVEPSDPALIKRI DALLAEPSTRSSR" sig_peptide complement(180211..180360) /locus_tag="Rpic_0162" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.952) with cleavage site probability 0.908 at residue 50" gene 181310..182164 /locus_tag="Rpic_0163" /db_xref="GeneID:6289811" CDS 181310..182164 /locus_tag="Rpic_0163" /note="KEGG: rso:RSc0308 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897758.1" /db_xref="GI:187927271" /db_xref="GeneID:6289811" /translation="MLYPELFKSLEAVRWNMEKDIPWDTFDASLLTDAQAQTIKMNAI TEWSALPATEMFLRDNRHDSDFSAFMSVWFFEEQKHSLVLMEYLRRFRPELVPTEEEL HNVRFEFDPAPPLETLMLHFCGEIRLNHWYRRASEWHTEPVIKAIYKHLSQDEARHGG AYLRYMKKYLGQFGDSARSAFAKIGVLMASARRTEKPLHPTNLHVNKALFPQDTVQSR LPNPDWLEHWLDEQIKFDAGWEKKVIERILHNMGLLFERTFETVQDLNRYRKELNARL LGSAEQAA" gene 182200..182736 /locus_tag="Rpic_0164" /db_xref="GeneID:6289812" CDS 182200..182736 /locus_tag="Rpic_0164" /note="TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; KEGG: rso:RSc0309 putative transferase protein" /codon_start=1 /transl_table=11 /product="rfaE bifunctional protein" /protein_id="YP_001897759.1" /db_xref="GI:187927272" /db_xref="InterPro:IPR004820" /db_xref="InterPro:IPR004821" /db_xref="InterPro:IPR011914" /db_xref="GeneID:6289812" /translation="MGRFVFHPDFGSTMTARQPAPAFEQKICDSADVQARVRALPRPL VFTNGVFDILHRGHATYLAQARALGASLVVGVNTDASVRMLGKGDDRPLNTQDDRLAV LAALEAVSLVVLFAERTPVELIQRVRPDIYVKGGDYDIDALEETRVVRSWGGTALAIP FEHDRSTTALLKRVRATS" gene complement(182741..183526) /locus_tag="Rpic_0165" /db_xref="GeneID:6289813" CDS complement(182741..183526) /locus_tag="Rpic_0165" /note="PFAM: Sporulation domain protein; KEGG: rso:RSc0310 putative signal peptide protein" /codon_start=1 /transl_table=11 /product="Sporulation domain protein" /protein_id="YP_001897760.1" /db_xref="GI:187927273" /db_xref="InterPro:IPR007730" /db_xref="GeneID:6289813" /translation="MTLRLALLILLLVNGVLLAANTGVFGPEVSKAWFESEREPDRMR RQIRTEEIRILEPAPAAAPAAGVPKSAPGSSPAGSAPAASGSQANIEPAALTTAAIAE SGGSCTELGGLTEAQATRGIDQLKQLAGVQVERITRQEDNRWWVHMPARDTRDDAERK VAELKRRNVADSAIVQEANTFVVSLGLFRDKERAQQRLDELRAKDVRTAVVTQTRRLG SQTSLRVSATADAASGVAAQLAALKKTLGAEDLHACAAVTASR" sig_peptide complement(182741..182800) /locus_tag="Rpic_0165" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.989 at residue 20" gene complement(183629..184510) /locus_tag="Rpic_0166" /db_xref="GeneID:6287276" CDS complement(183629..184510) /locus_tag="Rpic_0166" /note="type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP" /codon_start=1 /transl_table=11 /product="pantothenate kinase" /protein_id="YP_001897761.1" /db_xref="GI:187927274" /db_xref="InterPro:IPR004619" /db_xref="GeneID:6287276" /translation="MTRLKVSAAHAAPARPLLLIDAGNTRIKWAWIAGGADAEPALPE EPGGTPWQHAGARAHDRLAELVEDWRDCHASGVAPPEVWISAVAGPALRDALTARIAR VFDGARVCIAASEDATAGLRNGYRDPTQLGTDRWIGAVGARHLWPDTALLLVTAGTAT TLDIVTPDGLFAGGLILPGLTLMMHALSRNTAQLPEVDVGYLSAGDVVAPPWADNTQD AIALGCVIAQAGAIAQTWQALQKQYPGPARCVLSGGARAALGPHLRMPFQMHDNLVLL GLQVLARARREGAATLA" gene complement(184507..185388) /locus_tag="Rpic_0167" /db_xref="GeneID:6287277" CDS complement(184507..185388) /locus_tag="Rpic_0167" /note="catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon" /codon_start=1 /transl_table=11 /product="biotin--protein ligase" /protein_id="YP_001897762.1" /db_xref="GI:187927275" /db_xref="InterPro:IPR003142" /db_xref="InterPro:IPR004143" /db_xref="InterPro:IPR004408" /db_xref="GeneID:6287277" /translation="MSLAEPSAGWRLARERIQPSGPAAGWPVDVVEATGSTNADLMAA VRDATWPAYTATPAHAGNAPLVGARVLAAQRQTAGRGRQGRPWDGDHGLTFSIACAFA GEPAQLGGLSLAVGVAVVEAVAGYAEARGGSGQALSLKWPNDVQIAGRKLAGILVETV RTAPGRTWTVIGIGLNLERPHVLETTLGRGLSGVEELVDAPEANAVFSALLTSLGEHL QRFGLQGLAPFVAPFAARDAFAGERVRLWQDGSVVLEGVAHGIDAQGRLAIESGGRVQ WIHSGEVSLRSADAEQP" gene 185574..186698 /locus_tag="Rpic_0168" /db_xref="GeneID:6287278" CDS 185574..186698 /locus_tag="Rpic_0168" /note="PFAM: protein of unknown function DUF140; KEGG: rso:RSc0313 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF140" /protein_id="YP_001897763.1" /db_xref="GI:187927276" /db_xref="InterPro:IPR003453" /db_xref="GeneID:6287278" /translation="MITFRTPQLEVRVVDGRSVAFLSGDWTTLALAERAGVRSARQQI RAGLDNANAWCLTEVGRIDHFGAQLLWRAWGNQWPEHLDARPDQRRMLDRVAKLDPGG WKQRLAPRMNPVAILGEGMLDFFDHAGNGIAMVGQLVFDLGRFVRAPHRGPWREISAN IYSTGYKALGITALVGFLIGIVLSYLSANQLRVFGASIFIVNILGMAIIRELGPVLAA ILVAGRSGSAITAQIGVMRVTEELDAMRVMGISHGFRLILPKVIALAIAMPLLVAWTD LLALAGGILAAKFQLDISPTYFITSLPDAVPVANLWLGIGKGVVFGMLIALVACHFGL RIQPNTQSLGEGTTTSVVVSITIVILADAVFAILFKDVGI" gene 186695..187573 /locus_tag="Rpic_0169" /db_xref="GeneID:6287279" CDS 186695..187573 /locus_tag="Rpic_0169" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc0314 probable ATP-binding ABC transporter protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_001897764.1" /db_xref="GI:187927277" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:6287279" /translation="MTRPRHPHIKHAAEPAAITPARERVIEMRNVTKRYGKVTVLDNI DLDVFRGEVLSIVGGSGSGKTTLLRQVVGLEKPSSGTIHIFGEELTCQVGNDLQSMRN RWGMQFQHGALFSALSVIDNVALPMRELRTLPDAFIQRVAMLKLQMVGLKSTDADKMP SDLSGGMIKRVALARALSLEPELVFLDEPTAGLDPRASDDYVALIRELRQELGLTVVM VTHDLDTLVALSDRIAVLADRKVVAAKPLDQIIQIDHPFIKEYFLGERGKRALLALGS QMTEAVAAASLSTQED" gene 187573..188541 /locus_tag="Rpic_0170" /db_xref="GeneID:6286506" CDS 187573..188541 /locus_tag="Rpic_0170" /note="PFAM: Mammalian cell entry related domain protein; KEGG: rso:RSc0315 probable signal peptide protein" /codon_start=1 /transl_table=11 /product="Mammalian cell entry related domain protein" /protein_id="YP_001897765.1" /db_xref="GI:187927278" /db_xref="InterPro:IPR003399" /db_xref="GeneID:6286506" /translation="MENKAHAFLAGLFTIGLIIFIGLAVMWFNRDQTVRLPYDVVTRS TVNGLNPQASVKYRGLDVGKVDSIRFDDKVPGQIVVRVLVDKDAPITTTTYGRLAYQG VTGLAYVQLDDRGFDNSKRAPSPVRLATSDKDPARIRMEAGFLDELDKRGDQMLSKLD QTLNSLSIMFDDEHRQQVTASLQSFQKTMDAYSTLAQQAEPTMRRLPQIADNLDSTLV ATRKLTQSLSDPKGPLMSTLSGAGTDLTAATQSMQSAANVLTYETLPQLNGFAREARQ AVRGFDHAVTDFNARPQSVLFGPAPGAPDPGETGFTAPAARASAQP" gene 188551..189216 /locus_tag="Rpic_0171" /db_xref="GeneID:6286507" CDS 188551..189216 /locus_tag="Rpic_0171" /note="KEGG: rso:RSc0316 probable lipoprotein" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="YP_001897766.1" /db_xref="GI:187927279" /db_xref="GeneID:6286507" /translation="MPMLSAVFRRACALPALMALSLLAACSSAPVAPAALYDFGLAPA ASAGARLPTALRVADVAGPGWMDGNAIYYRLAYAQGQRTDAYANSRWVESPVSLFDAR LRNAAAGRGQVIGYPTPDVPSLRVELVDFSQVFDRPDASRGVVRLRATVSLARGVIDQ RVVQADAPAPSPDAAGGVAALTQASDKAIGEVLDWVAGLPLAASASSTPATPGAALGT RRR" sig_peptide 188551..188637 /locus_tag="Rpic_0171" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.485 at residue 29" gene 189255..190520 /locus_tag="Rpic_0172" /db_xref="GeneID:6286508" CDS 189255..190520 /locus_tag="Rpic_0172" /note="PFAM: VanZ family protein; KEGG: rso:RSc0317 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="VanZ family protein" /protein_id="YP_001897767.1" /db_xref="GI:187927280" /db_xref="InterPro:IPR006976" /db_xref="GeneID:6286508" /translation="MRGIGRYDGRLFPATSAPLSSSLLPVTDFHSQPAAPTQHRHSPL ARAGLGWFVLLVVYASLYPFAGWTDTGVSPFAFLSAPLPRYNTAFDMLTNVWGYMPLG MLTVLALHPRITGWRAVLLALLAGLLLSGAMEAIQTYLPTRVSSNVDLATNTLGALLG GLVMLPFAARLIDRGGLRRLRRRWFEPHATFAILLMLVWPFAQIFPQEFLFSMGGVIR SILLDPSPDAFVVNLVNGWFPELFDWQDKLTAHPEALQRQELLEALITACSWIGTGLL ASVAMRSGAPMLRLLAALLAGALLVKAGATVLQFPLGGAWDWLSSGARFGLIVGSLVL VLLVRLPRWLRGALAMTLLIALIILSNVLPPSPYSWVSAQSWRLGRFVHFNSLSQWIG WLWPFLGLGYLAWRAEQTQLQRRAGRHAR" gene complement(190508..191752) /locus_tag="Rpic_0173" /db_xref="GeneID:6286509" CDS complement(190508..191752) /locus_tag="Rpic_0173" /note="PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_B3681 major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_001897768.1" /db_xref="GI:187927281" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:6286509" /translation="MSPATPVDAWREAIRWLLVIQALSMGAMEMTGPFWPLFLRELSP VPHVPFAWVASAAYFAPMAATLVTAPWWGRLADRVGPKPMILRALIALAASQLWSVHA DSAASVLLARTVQGGLAGFLAAAQIYAMRVAPADMRRRVFADLQTVTACGSFMAPPVG AWLVSWMGFRMANTAGAVVILACVPLAMFCLPGIGPAPRSASKSTSDMLQSRHAPLSG LVIGLLLGTVAVQAARVMPQGFLAPYITETLHGSVILAGLAYSATAATLALSARWWAK RFAGLPVHVTLGRVCALTAVCGVTALWQGLAQGEVGFIAARLAWGLCLGGLLPVLNSL VAETSPEDRQGFALGLCSSAAKGGALVGLGVAAWSTGVFGWRAGFVAMAAMYLAALAA LIAVRRAASPHPASAAAGTQRA" gene complement(191749..193716) /locus_tag="Rpic_0174" /db_xref="GeneID:6288868" CDS complement(191749..193716) /locus_tag="Rpic_0174" /note="PFAM: IucA/IucC family protein; KEGG: bbt:BBta_0635 putative siderophore biosynthesis protein" /codon_start=1 /transl_table=11 /product="IucA/IucC family protein" /protein_id="YP_001897769.1" /db_xref="GI:187927282" /db_xref="InterPro:IPR007310" /db_xref="GeneID:6288868" /translation="MQRRSDTAAHTETASAAAAAGNLRLESIPALRDAGVQTEHWSAA QQLARCRVLSRLLQALFREALLSADRLIADTRADVTLLPIWQQRVLLRFTGLRPGALG SWTLTGDVAVLAHDRPPTPIERPSALLHWLAPMLDMGDAAEAHRLAAIDRLAAELDNS QDNDTLCQAYRLAWGARLAAEHRTAAWQDALALLCGDGTPHALARTEQWGTGGHPWHP AYKTRLGLAPDQVIALSPEFEAQVPLGVVAVAAHRLQVTTMDGVQPYANWFAAAFPQT MAAFRKALLARQLAPEAWLPLPVHPWQRDTTLGETFAAEFAAGELIRLPDINIAARPT MSFRTVAATDAPGGAMLKLPVSMRLTSVERTVSPKSAVMGPRVSALLERILANDAALA SVLSIVPERHGIHLAGTDDERARHLSMIVRDNPTTRIAGNARLLPVGALFTPDFTADM THAAAPLLLDTVLARQADGTRAERAARFFDAYLHVAIPAIVGLYLRYGIALEAHQQNT FVVIDEAGMPVRLVVRDFGDVKIALPTLQAQGFSIEPFRAGHTTYPDRDIPRKKLIHA FLLCHIGELALALFPEHGSAVGLRQWHDAMQAVFEANRTALDADTWKQERHALLEAPW SFKTFVRMRLRDQSDDMHAALPNPLADAVRT" gene 194325..196427 /locus_tag="Rpic_0175" /db_xref="GeneID:6288869" CDS 194325..196427 /locus_tag="Rpic_0175" /EC_number="3.1.4.3" /note="KEGG: rso:RSc0319 probable non-hemolytic phospholipase C (phosphatidylcholine cholinephosphohydrolase) signal peptide protein; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756" /codon_start=1 /transl_table=11 /product="phospholipase C, phosphocholine-specific" /protein_id="YP_001897770.1" /db_xref="GI:187927283" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR007312" /db_xref="InterPro:IPR008475" /db_xref="GeneID:6288869" /translation="MTSNSRRGFLRSAAQLAAASAAMGAVPEGIRQALAIPAHNAHRN IEDVQHIVILMQENRSFDHYFGTLRGVRGYGDTRTVTLPSGKSVWHQPVAGGAGEVLP FRPSAPDLGLQFLQDLPHGWNDTHLAVNGGRYDGWVPHKGTTTMAYLTRQDIPFHYAL ADAFTICDAYHCATPTSTDPNRYYMWTGYVGNDNVGGGPVIDNAEAGYGWSTYPEVLE AAGISWKIYQDIGTGLDAAGSWGWTSDAYIGNYGDNSLLYFKQYQNAQPGNPLYDKAR TGTNAAAGEGYFDILKRDVQNGTLPQVSWIAAPEAFSEHPNWPANYGAWYIDQVLQIL TSNPEVWSKTAVFVTYDENDGFFDHLVPPFASSGSNGLSTVDTTGEYFPGNSTYGAGS YGLGQRVPMLVVSPWSKGGYVCSETFDHTSIIRFIEQRFKRTHNVRSPNISKWRRAVC GDLTSAFNFATPNEVVPALPSTAAYVPKDKLRHASYVPLPPLVQAVPKQEAGVRASRA LPYELFVRGRQDEAAGKFQLEFVNTGDVGAAFLVYTAGSTDAPRTYTVEAGKRLSDKL AVNAGGAYDFTVHGPNGFLRRFVGKLTLSGLLSPHGHALEVKEGYDVANGNLQLRLIN HGRAPTVFTIKSAYTGESVQREVRGGDDASVYLDLRSHHAWYDLTVTASTDAGFARRL AGHVETGRVSASDPALSA" sig_peptide 194325..194399 /locus_tag="Rpic_0175" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.979 at residue 25" gene complement(196502..196612) /locus_tag="Rpic_0176" /db_xref="GeneID:6288870" CDS complement(196502..196612) /locus_tag="Rpic_0176" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897771.1" /db_xref="GI:187927284" /db_xref="GeneID:6288870" /translation="MTHYWGYPFADVLAIVVIVGLSALALYQAHTYTKQL" gene 196922..197383 /locus_tag="Rpic_0177" /db_xref="GeneID:6288871" CDS 196922..197383 /locus_tag="Rpic_0177" /note="KEGG: rso:RSc0320 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897772.1" /db_xref="GI:187927285" /db_xref="GeneID:6288871" /translation="MNTRLAIAFSRHTLVALVATVSASAALLSAQPAAAAVQSSADPY TQGAVAKADPYTQGAAAKYDVYTQGADRQADTYGYLSWKNDRFDPYTQGAVGKADPYT DGAIAKADPYTDGAAAKYDVYTQGADRQADTYGYLSWNGDASYPKDAASQA" sig_peptide 196922..197029 /locus_tag="Rpic_0177" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.967 at residue 36" gene complement(197460..198461) /locus_tag="Rpic_0178" /db_xref="GeneID:6289347" CDS complement(197460..198461) /locus_tag="Rpic_0178" /note="catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group" /codon_start=1 /transl_table=11 /product="lipoyl synthase" /protein_id="YP_001897773.1" /db_xref="GI:187927286" /db_xref="InterPro:IPR003698" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="GeneID:6289347" /translation="MTDSAAGATEVATPATPSNKPYDATAKQKSLDKTARIPIKIVPA EKLKKPDWIRVRAATGNSRFYEIKDILRANNLVTVCEEASCPNIGECFGKGTATFMIM GDKCTRRCPFCDVGHGRPDPLDVNEPENLAKTIAELKLNYVVITSVDRDDLRDGGAQH YVDCISRTRALSPATRIEVLVPDFRGRLEKALDILQECPPDVMNHNLETVPRLYKQAR PGADYAHSLKLLKDFKARNPNVPTKSGLMVGLGETDEEILEVMRDMREHDIDMLTIGQ YLAPSGHHLPVLRYVHPDTFKMFEEKAYEMGFTHAAVGAMVRSSYHADQQAHEAGVV" gene complement(198504..199193) /gene="lipB" /locus_tag="Rpic_0179" /db_xref="GeneID:6289348" CDS complement(198504..199193) /gene="lipB" /locus_tag="Rpic_0179" /note="lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferse; lipoate-protein ligase B; transfers lipoate to apolipoproteins; involved in lipoate metabolism" /codon_start=1 /transl_table=11 /product="lipoyltransferase" /protein_id="YP_001897774.1" /db_xref="GI:187927287" /db_xref="InterPro:IPR000544" /db_xref="InterPro:IPR004143" /db_xref="GeneID:6289348" /translation="MIPIDIVERGLQDYAACFDEMQTFTARRGPDTPDTIWLVEHPPV FTLGLAGDPAHLLAPGNIPLVKVDRGGQITYHGPGQVVAYLLLDLRRRGLFVKALVDA IEAAVIQTLATYNVASERKAGAPGIYLSSGPHAGAKIAALGLKIRNGCSYHGVSLNLA MDLSPFTQINPCGYAGLETVDMVTAGARDASGRAVDANDWQTVSRDLANALVAQLQQR AQAHPAEAATA" gene complement(199354..199713) /locus_tag="Rpic_0180" /db_xref="GeneID:6289349" CDS complement(199354..199713) /locus_tag="Rpic_0180" /note="KEGG: rso:RSc0324 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897775.1" /db_xref="GI:187927288" /db_xref="GeneID:6289349" /translation="MKAVLTKIVFTLQPGEVVALRMPANQNLRVEEACGRDVWVTHEN KAGDEWLRAGGSVAVKRGEEIVVSVDPKALGPVALAVEATDGHMPRKPWHVTNGWRHT LAALGWNEHADTPIVAA" gene 199864..200826 /locus_tag="Rpic_0181" /db_xref="GeneID:6289350" CDS 199864..200826 /locus_tag="Rpic_0181" /note="Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional activator GcvA" /protein_id="YP_001897776.1" /db_xref="GI:187927289" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:6289350" /translation="MTEIREPMRLPSLGALRVFEAAARYESFSRAATELFVTHGAVSH QMRTLEDELGVPLFERRGKRVMLTHAGRAYADRVREALDQIAQATHQLRAGNRDNRLA ISTMPSFAARWLTPHIGTFIERHPELEVELFSSPALVDFAREEVDVALRMGSGNYPGL YVEKLLDDVFFPICSPSFNGGRLPRTLAEMASMTLLRSEGEAWKPWFDAAGLEGFVEP RGGLMFQDSSLLLQAAAAGQGIALIRPTLAFNELLAGRVVRLFETTIPCPWNYYFVCP HSALQTPKMQAFRTWLLPEIAAFKLKLAGLMNDNAVCLGHVSKG" gene complement(200916..201215) /locus_tag="Rpic_0182" /db_xref="GeneID:6287432" CDS complement(200916..201215) /locus_tag="Rpic_0182" /note="PFAM: protein of unknown function DUF493; KEGG: rso:RSc0326 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897777.1" /db_xref="GI:187927290" /db_xref="InterPro:IPR007454" /db_xref="GeneID:6287432" /translation="MTSSHTPPPGHIPPEQSLIEYPSDFPIKVMGPMHDDFAATIVEV VRLHDPEFHEGRLEKRPSSSGNYLGLTVIVRATSREQLDALYQALTSHPMVKIVL" gene complement(201236..202438) /locus_tag="Rpic_0183" /db_xref="GeneID:6287433" CDS complement(201236..202438) /locus_tag="Rpic_0183" /EC_number="3.4.16.4" /note="PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: rso:RSc0327 probable penicillin-binding (D-alanyl-D-alanine carboxypeptidase) transmembrane protein" /codon_start=1 /transl_table=11 /product="Serine-type D-Ala-D-Ala carboxypeptidase" /protein_id="YP_001897778.1" /db_xref="GI:187927291" /db_xref="InterPro:IPR001466" /db_xref="InterPro:IPR001967" /db_xref="InterPro:IPR012907" /db_xref="GeneID:6287433" /translation="MQTRFAHFTPFAFHSAAATAVAAAVLVTALPAMAQPVPAPQVAA RSWMLTDVTSGQVLGGANMDERIEPASLTKLMTAYLVFEAVRDGKLKYDQMITPTETV RTVKTDESRMFLEAGKPASVREMTQGLIIQSGNDAALVLAEAVGGTETNFVMLMNREA ERLGMKNTHFANAAGLPDPNHYSTARDLSILTAALIKDFPQDYKFYSQKEFTYNNIKQ SNRNRLLWLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGANRRLLSVIIGTKSDAI RTQESLKVLNYGYQFFDTVRLYKAKEALQTPDVYKGQAKSVKLGVAEDKWITVPKGAG ARLKPVLERKDPLIAPIAQGQQLGTVKVMDGSTVVSEFPVVALEAVPEAGFVGRTIDA VKLWFKKK" sig_peptide complement(201236..201340) /locus_tag="Rpic_0183" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 35" gene complement(202533..203180) /locus_tag="Rpic_0184" /db_xref="GeneID:6287434" CDS complement(202533..203180) /locus_tag="Rpic_0184" /note="KEGG: rso:RSc0328 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001897779.1" /db_xref="GI:187927292" /db_xref="GeneID:6287434" /translation="MNVHTEERLIPGPVGQIDLSIDRPDTAPRGLALIGHPHPLFGGT KDNKVAQTLARTFVGLGYVTVRLNFRGVGKTEGTHDNGIGEQDDMLAVLDWMRTQTEW SADVATLPLALGGFSFGSFVVSQVARRLAEAGTPAERLALVGTATSRWDVAPVPADTI IIHGEQDDTVPLIDVLNWARPQELPVIVIPGADHFFHRKLHLIRQLITGAWAPKP" gene complement(203216..203545) /locus_tag="Rpic_0185" /db_xref="GeneID:6287435" CDS complement(203216..203545) /locus_tag="Rpic_0185" /note="KEGG: rso:RSc0329 putative ferredoxin 2Fe-2S protein" /codon_start=1 /transl_table=11 /product="putative ferredoxin 2Fe-2S protein" /protein_id="YP_001897780.1" /db_xref="GI:187927293" /db_xref="GeneID:6287435" /translation="MSSHYQHHVFFCLNEREDGSRCCADFGAKAMQEYAKKRCKELGI NGEGRVRINKAGCLDRCELGPVMVVYPEAVWYTFVDKEDIDEIIQSHLIEGKPVERLM VDRPASA" gene 203997..205286 /locus_tag="Rpic_0186" /db_xref="GeneID:6289286" CDS 203997..205286 /locus_tag="Rpic_0186" /note="involved in the transport of C4-dicarboxylates across the membrane" /codon_start=1 /transl_table=11 /product="C4-dicarboxylate transporter DctA" /protein_id="YP_001897781.1" /db_xref="GI:187927294" /db_xref="InterPro:IPR001991" /db_xref="GeneID:6289286" /translation="MKKPFYKILYVQVLAAIVIGVLLGHYSPELAVKMKPLGDGFIQL IKMVIGPIIFCTVVSGIAGMRDMKKVGRVGGKALLYFEVVSTFALIIGLAAGHIFNPG AGFNVDVNTIDAKAVAQYAAKAHSASTVDFLLNIIPSTVVDAFAKGDILQILLIALLF GGALSAMGERAQMVTDFIDQISHVFFRIVHVITRVAPIGAFGAMAFTIGKYGVISLVP LLKLVGTFYFTAIIFVVVVLGIIARVVGFNIFRFVAYIKEELLIVLGTSSSESALPHL MEKMEKLGCSKSVVGLVVPTGYSFNLDGTNIYMTMAVIFISQALNIELTWTQQLTILA VAMLTSKGASGITGAGFITLAATLAVVPDIPVAGMVLILGIDRFMSECRALTNITGNG VACVVISAWERELDRAKLARVLSGDRSDEGVPATPAV" gene 205388..207406 /locus_tag="Rpic_0187" /db_xref="GeneID:6289287" CDS 205388..207406 /locus_tag="Rpic_0187" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rso:RSc0331 probable C4-dicarboxylate transport sensor kinase transcription regulator protein" /codon_start=1 /transl_table=11 /product="integral membrane sensor signal transduction histidine kinase" /protein_id="YP_001897782.1" /db_xref="GI:187927295" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:6289287" /translation="MHLVKHLGDMPTAGTALEGTATLSAADLQPMSDPDFSFTSASGS RRGFWWLVALGLVVVMAVVCATTFVVAWNRGLTQAQQAAGGRVDRYAANLKSTLDRYE YLPALVALHPFIHDLLANPTPANVDRANRYLREVNDRAHATATYVIAPSGKALAASNY NQPDSFVGAEYLFRPYFQQAAEGHVGRFYGIGITREEPGYYISQPVMQDGRVIGVTVV KLNLEWFGRASHDASEPVMVADENGVIFLSSVPAWQYRTVEPLTSKLQAQLEATRQYY RKQITPLPLQPEAPAFLRLTGRLPEGAELIRVGERTNATRYLQVSRELVEPDWTLMYL TPVEPVMSAARSATVAAAFAFAFACLLLFYWRQRRLRMMEMLRSRRLLEAAYDQLERR VEDRTADLMATNEQLQHEIVDRTRAEAELRATQDELVQASKLAALGQMAAGITHELNQ PLAALRTFSDNTRILLERGQHGAATDNLQAIADLTERMGKITAQLKLFAGRSRRKVVD VQVRVALDHTLALLRPRLGDVLVELHWRIPETEAVVRADELKLEQVLINLIGNALDAI NANEPVRAGRIDITIGPTEGAQAQSNQLTIAVRDNGPGIPPDAMPHLFEPFFTTKEIG QGLGLGLAISTSIARDFGGSLSAANMPGGGAQFTLTLVRADVTSAATT" gene 207432..208748 /locus_tag="Rpic_0188" /db_xref="GeneID:6289288" CDS 207432..208748 /locus_tag="Rpic_0188" /note="PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rso:RSc0332 probable C4-dicarboxylate transport response regulator transcription regulator protein" /codon_start=1 /transl_table=11 /product="two component, sigma54 specific, transcriptional regulator, Fis family" /protein_id="YP_001897783.1" /db_xref="GI:187927296" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011704" /db_xref="GeneID:6289288" /translation="MSEGLNVLFIEDDPPVRQATAQSLELAGFNVQAFGSAEEAVGKI DANFPGVVVSDLRLPGASGLDVLTHCQSFGTGIPVVLVTGHGDITMAVQAMREGAFDF IEKPFPAERLTETVRRAVERRALELENRALRRELAGPAAGTRIIGRSPAMAAVRALIE NVATTDAPVLINGETGTGKELVARSLHMLSPRHDKPFIALNCGAVPEQIFESEMFGYE AGAFTGAGKRRIGKLEHASGGTLFLDEIESMPIALQVKLLRVLQEGALERLGSNASVR IDVRIVAAAKGDMEALIEAGGFRRDLYYRLNVVVIDLPPLRERREDIIPLFEHFLLEA AVRYQRPLPMLAERQRHELMQSNWPGNVRELRNAADRLVLGVGRMPVVPDASEDGMPL KERVERYERTVIAETLARTGGSVHQAADILQVGRATLYDKIKRYGL" gene complement(208806..209543) /locus_tag="Rpic_0189" /db_xref="GeneID:6289289" CDS complement(208806..209543) /locus_tag="Rpic_0189" /note="KEGG: rso:RSc1547 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897784.1" /db_xref="GI:187927297" /db_xref="GeneID:6289289" /translation="MVNHYCMFKGKLKFGVPYLEGYNGNPHYAIVLEAPDGADFVVLA NVKSDSSMPGAGAAGYHVLYQWTTDLQLPITADLTALAPGLHAGGFPRLDYLRDAGLV DFPNMRPIALDTETEHNDINALVDDMLNLDRTATPIDYVYHGSSGDDDRKGWPPRTDV TVYGFGFLFEPQHNGLHETHMNQGNPVVHTPGVKDHSRENGTQQDGAVIVETDGKFQA LLIAFQTQRIPTDDRGYPVADAHPIPG" gene complement(209683..210243) /locus_tag="Rpic_0190" /db_xref="GeneID:6287991" CDS complement(209683..210243) /locus_tag="Rpic_0190" /note="PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rso:RSc0333 putative transmembrane protein" /codon_start=1 /transl_table=11 /product="Redoxin domain protein" /protein_id="YP_001897785.1" /db_xref="GI:187927298" /db_xref="InterPro:IPR000866" /db_xref="InterPro:IPR011594" /db_xref="InterPro:IPR013740" /db_xref="GeneID:6287991" /translation="MASTLTSSAAPATATATSGGRRWLLPVIMLVLAVGGWFGWRAFS PSQQVPAATFTLLDGQKLSTQDLKGKVYLVNFWATSCATCIKEMPNMIQTYNKYKGEG LEYVAVAMSYDAPMYVMNFSQTRQLPFKVAMDADGSAAKAFGDVQLTPTTFLVDREGR ILKRYVGEPEWSSFDSLLKQALGKQA" sig_peptide complement(209683..209733) /locus_tag="Rpic_0190" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.703) with cleavage site probability 0.542 at residue 17" gene complement(210346..210858) /locus_tag="Rpic_0191" /db_xref="GeneID:6287992" CDS complement(210346..210858) /locus_tag="Rpic_0191" /note="PFAM: Appr-1-p processing domain protein; KEGG: rso:RSc0334 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897786.1" /db_xref="GI:187927299" /db_xref="InterPro:IPR002589" /db_xref="GeneID:6287992" /translation="MPISVTVRALRADITTLDCDAIVNAANSSLFGGGGVDGAIHRAA GPELLEACRALHGCRTGEAKLTPGFRLPARYVIHTVGPIWHGGRQDEAALLAACYRNS LELARKHEVRSIAFPCISTGVYGFPPQLAAPIAVRAAREHGAGLDAITFCCFSATHLA LYEAALASDK" gene 210943..211512 /locus_tag="Rpic_0192" /db_xref="GeneID:6287993" CDS 210943..211512 /locus_tag="Rpic_0192" /note="KEGG: rso:RSc0335 putative transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001897787.1" /db_xref="GI:187927300" /db_xref="GeneID:6287993" /translation="MAVKVTAGWRIGLGALACALLVACSPKYDWRTVHSNEGAYAVDY PAKPTAEARPIAINGQRMPMTMQAASVDGTLFAIGVVELPADDPVWRQRAVEALRNGL SANLKGHVTERDIVVQTAAQPPLSLPALELIALGAGGDDPAPRRLTARVVATGKHAYQ AVVLESGDAARDARQQEQVDQFLASFHPY" gene 211603..212244 /locus_tag="Rpic_0193" /db_xref="GeneID:6287994" CDS 211603..212244 /locus_tag="Rpic_0193" /note="PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: reu:Reut_A0287 lysine exporter protein (LysE/YggA)" /codon_start=1 /transl_table=11 /product="Lysine exporter protein (LYSE/YGGA)" /protein_id="YP_001897788.1" /db_xref="GI:187927301" /db_xref="InterPro:IPR001123" /db_xref="GeneID:6287994" /translation="MTLQVWLAFFLAAWVIAISPGSGAILCMSHGLTHGVRRTSVTIA GLELGIVVILFIAGAGLGALLIASEHAFTAIKIIGAMYLIYLGIVQWRTPIQIAKPTE GEPLKVSGSGARRRFLVGLLTNLTNPKGILFMVAVLPQFIDPAKPLLSQLGILAATMV FVDLIVMHGYALLASRAQRLFRNPRALRWQSRFFGGMLMSIGAALFFVKRQTA" sig_peptide 211603..211674 /locus_tag="Rpic_0193" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.806) with cleavage site probability 0.263 at residue 24" gene complement(212305..213837) /locus_tag="Rpic_0194" /db_xref="GeneID:6286681" CDS complement(212305..213837) /locus_tag="Rpic_0194" /note="KEGG: rso:RSc0338 probable Mg(2+) chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="Mg chelatase, subunit ChlI" /protein_id="YP_001897789.1" /db_xref="GI:187927302" /db_xref="InterPro:IPR000523" /db_xref="InterPro:IPR001208" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR004482" /db_xref="InterPro:IPR011704" /db_xref="GeneID:6286681" /translation="MSLAVLRSRALSGIDAPAVSVEVHLANGLPSFTIVGLPDTEVKE SKDRVRAAIQNSRFEFPARRITVNLAPADLPKESGRFDLAIALGILAASRQIPHTHLD AHEFAGELSLSGDLRPIRGALAMAYALSRNPVSADGDAPLARDFVLPAENAAEAALVS GTKVLPARTLIEVCDHLSAPDRKLAPALPALVDADIRYPDLADVRGQPQARRALEVAA AGGHSMLMIGPPGTGKSMLAQRFPGLLPDMSDDEALSAAAVMSLTTRGFDARRWKVRP FRSPHHTASAVAMVGGGNTPRPGEISLAHQGVLFLDELPEFERRVLEVLREPLETGHI TISRAARQTDFPASFQLIAAMNPCPCGYRGHPLRACRCTPDQVERYQARISGPLLDRI DVQIEVPTPSQEELLDGPPGEPTRNVAERVSAAHARQLARQGKRNALLGGHEIDLHCS RTDAADGLLRHAMTRFSWSARAYARVLKLARTIADLAGDEQIDAAHVGEAIQYRRGVK AD" gene complement(214052..214564) /locus_tag="Rpic_0195" /db_xref="GeneID:6286682" CDS complement(214052..214564) /locus_tag="Rpic_0195" /note="KEGG: rso:RSc0339 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001897790.1" /db_xref="GI:187927303" /db_xref="GeneID:6286682" /translation="MQHRLYFLMPDVVSARRVMNDLLLARITERHIHFVSKPGVDLTG LHEANILQTSDIVHATQNGLVIGGGAGVLAGIVAAIFPVIGEGPQWGMVGITTVVGAL FGAWASSMIGSSVPNSRLKPFKQAVEDGQILLMVDVPRSRVSEVRALLQRTHPEGRFS GEDSAMPAFP" gene complement(214742..214999) /locus_tag="Rpic_0196" /db_xref="GeneID:6286683" CDS complement(214742..214999) /locus_tag="Rpic_0196" /note="PFAM: protein of unknown function DUF526; KEGG: rso:RSc0340 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF526" /protein_id="YP_001897791.1" /db_xref="GI:187927304" /db_xref="InterPro:IPR007475" /db_xref="GeneID:6286683" /translation="MKPTDLFSDFQNRVSEALRNSPAADIEKNVRAMMTQGFSKLDLV TREEFDVQSQVLARTRARLEELETRVAALEAQLKSAAPADQ" gene 215532..216347 /locus_tag="Rpic_0197" /db_xref="GeneID:6286684" CDS 215532..216347 /locus_tag="Rpic_0197" /note="PFAM: conserved hypothetical protein; KEGG: rso:RSc0341 probable signal peptide protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897792.1" /db_xref="GI:187927305" /db_xref="InterPro:IPR010239" /db_xref="GeneID:6286684" /translation="MKKFAYAASLVLLTGAVAGVSQTAIAQSAPAADAPAAAPAPAPA ALTANVTLASQYRYRGIMQTNNKPAIQGGFDYAIPGGVLPEGFYIGNWNSSISWLSDS NSNVSAPIEMDFYGGYKTEIVKDVPIDVGVLQYYYPGSYPDGFTRPHTTEGYAQIGYG PVTFKYSHAFSNLFGTPDSHHSQYFDLSGNFDTGFWGLTLNLHAGYQQVPHQTVRASY ADWKVGVTKDFGNGWAASLAYIDTNASRAFYTNTRGNYMGKATALLSITKTFQ" sig_peptide 215532..215612 /locus_tag="Rpic_0197" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.928 at residue 27" gene 216394..216732 /locus_tag="Rpic_0198" /db_xref="GeneID:6286805" CDS 216394..216732 /locus_tag="Rpic_0198" /note="PFAM: nitrogen regulatory protein P-II; KEGG: rso:RSc0342 probable nitrogen regulatory P-II transcription regulator protein" /codon_start=1 /transl_table=11 /product="nitrogen regulatory protein P-II" /protein_id="YP_001897793.1" /db_xref="GI:187927306" /db_xref="InterPro:IPR002187" /db_xref="InterPro:IPR002332" /db_xref="GeneID:6286805" /translation="MKLIMAIIKPFKLDEVREALSEVGVSGITVTEVKGFGRQKGHTE LYRGAEYIVDFLPKVKIEVAVPDDVVERAVEAIEKSARTGKIGDGKIFVADVEQVIRI RTGETGGDAL" gene 216763..218310 /locus_tag="Rpic_0199" /db_xref="GeneID:6286806" CDS 216763..218310 /locus_tag="Rpic_0199" /note="TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: reh:H16_A0321 ammonium transporter" /codon_start=1 /transl_table=11 /product="ammonium transporter" /protein_id="YP_001897794.1" /db_xref="GI:187927307" /db_xref="InterPro:IPR001905" /db_xref="InterPro:IPR010256" /db_xref="GeneID:6286806" /translation="MKTWFTRFLTAGAVAAVLAGAVISAPAAAQDKPAAEASAPVAAA AASEPAAAAPAAAAPAAAPAAAAAPAAAAPAAAAPVPNKGDTAWLLVSTAFVILMTLP GLALFYGGLVRKKNMLSVLMQCMGIFSLIIILWAIYGYSFAFTEGNAFFGGLDRLFLK GLTPDSVAATFSKGVVVPEYAYFAFQGAFAAITCALIIGAFAERAKFSAVLLFVVLWF TFSYVPIAHMVWFWPGPDGFTDAKAAEVMTAKSGWLFQKGALDFAGGTVVHINAAVAG LVGAFLFGKRIGFGREALKPHSLTLTMVGASLLWFGWFGFNAGSALEANGSAALAFVN TLLATAAAVLSWSFGEWFGKSKPSMLGAASGAVAGLVAITPAAGFVGPMGSIALGIIA GLLCLWGVNGLKRMLGMDDTLDVFGVHGVGGILGALLTGVFAAPSLGGTGIYDYVANK VADDYSIGGQLWIQFQGVATTVIWSAVVAFISYKIVDAIVGLRVPEEEEREGLDITSH GETAYED" sig_peptide 216763..216852 /locus_tag="Rpic_0199" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 30" gene 218677..219972 /locus_tag="Rpic_0200" /db_xref="GeneID:6286807" CDS 218677..219972 /locus_tag="Rpic_0200" /note="TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase GshA; KEGG: rso:RSc0344 hypothetical protein" /codon_start=1 /transl_table=11 /product="glutamate/cysteine ligase" /protein_id="YP_001897795.1" /db_xref="GI:187927308" /db_xref="InterPro:IPR011718" /db_xref="GeneID:6286807" /translation="MVPHLITALNGPLLELEQKILDATPAIERWFRLEWQEHTPPFYC SVDLRNAGFKLAPVDTNLFPGGFNNLAPEMLPLAVQAAMAAIEKICPDAKNLLLIPER HTRNMFYLQNVARLSQIMRQAGLNVRLGSLSEDITEPTSIDLPDGQRLVVEPIKRIGT KGRRLGMEDFDPCSILLNNDLSAGVPPILENINEQYLLPPLHAGWSQRRKTNHFAAYD EVAKKFAKLIDIDPWMVNPYFTKCSGLDFHERAGEEELAHAVETVLKKTAKKYKEYGV TETPYVVVKADAGTYGMGVMTVRDPSEVKGLNRKERNKMSVVKEGLEVSEVIVQEGVH TFEKINEAVAEPVVYMIDRYVVGGFYRVHTGRGVDENLNAPGMHFVPLPFASNSLPDS HAKPGAGEPNRFYMYGVVARLALLAASLELEKTDPNPLI" gene 220005..220976 /locus_tag="Rpic_0201" /db_xref="GeneID:6286808" CDS 220005..220976 /locus_tag="Rpic_0201" /EC_number="6.3.2.3" /note="The second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione" /codon_start=1 /transl_table=11 /product="glutathione synthetase" /protein_id="YP_001897796.1" /db_xref="GI:187927309" /db_xref="InterPro:IPR004215" /db_xref="InterPro:IPR004218" /db_xref="InterPro:IPR006284" /db_xref="InterPro:IPR011761" /db_xref="InterPro:IPR013651" /db_xref="GeneID:6286808" /translation="MRILFIVDPLSTFKTYKDSTFAMMREAAARGYAIYTCLQSQLTL ANNVVETVATPIALTGDEDDWYRAGDARLLPLTGFDAVLMRKDPPFDMEYVTSTWLLE IAERQGARVFNKPQAIRDHSEKLAIAQFREFTVPTIVSRDAKRLREFHAEQGDVIFKP LDGMGGAGIFRVGPDGLNLGAVIESLTDNGARTIMAQQYIPAIREGDKRILLIGGSPV PHSLARVPMAGEVRGNLAAGGTGRAQPLSERDQVIAHALAPVLWQRGLLLVGLDVIGD YLTEVNVTSPTCFQEITQQTGFNVAGMFIDALERAAGKSSGLGRKPA" gene 221096..221551 /locus_tag="Rpic_0202" /db_xref="GeneID:6287932" CDS 221096..221551 /locus_tag="Rpic_0202" /note="PFAM: PTS system fructose subfamily IIA component; KEGG: rso:RSc0346 hypothetical protein" /codon_start=1 /transl_table=11 /product="PTS system fructose subfamily IIA component" /protein_id="YP_001897797.1" /db_xref="GI:187927310" /db_xref="InterPro:IPR004701" /db_xref="GeneID:6287932" /translation="MAGILIIAHAPLASALRDCAAHVYCGQPEGLGAIDVLPDAEPAA VLAQARDKLAELIEANGALVLTDIFGATPANIASRLADPGRVRVLAGVNLPMLVRAIC YRSEKLEQLAAKALAGGAQGVLQVGSTAVQNQVANHPDKYAAEGYHHHQ" gene 221520..221789 /locus_tag="Rpic_0203" /db_xref="GeneID:6287933" CDS 221520..221789 /locus_tag="Rpic_0203" /note="TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: rso:RSc0347 probable phosphocarrier protein HPr (phosphohistidinoprotein-hexose phosphotransferase)" /codon_start=1 /transl_table=11 /product="Phosphotransferase system, phosphocarrier protein HPr" /protein_id="YP_001897798.1" /db_xref="GI:187927311" /db_xref="InterPro:IPR000032" /db_xref="InterPro:IPR001020" /db_xref="InterPro:IPR002114" /db_xref="InterPro:IPR005698" /db_xref="GeneID:6287933" /translation="MLQRDITIINKLGLHARASAKLTQLASKFDSQIKMSRNGRQVDA KSIMGVMMLAAGIGSTVTLEIDGPDEHDAMDGLVALINDRFGEGE" gene 221835..223586 /locus_tag="Rpic_0204" /db_xref="GeneID:6287934" CDS 221835..223586 /locus_tag="Rpic_0204" /note="TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: rso:RSc0348 probable phosphoenolpyruvate-protein phosphotransferase transmembrane" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate-protein phosphotransferase" /protein_id="YP_001897799.1" /db_xref="GI:187927312" /db_xref="InterPro:IPR000121" /db_xref="InterPro:IPR006318" /db_xref="InterPro:IPR008279" /db_xref="InterPro:IPR008731" /db_xref="GeneID:6287934" /translation="MPFTLHGIPVSRGISIGRAHMLARAALDVSHYLVDEDKLDAEVE RLRSARATVRSELAALKRDLPSDVPEEMGAFLDVHAMILDDALLSQVPETLIRQRRYN AEWALTTQLEELIRQFGEIEDEYLRERKADIEQVVERILKVLAGAPALAPAPVAVGCD PDAGMIVVAHDIAPADMLQFRGQTFAGFVTDLGGRTSHTAIVARSLDIPAAVGVHNAS TLIRQDDIVVIDGDNGIVIVDPSTSILEEYRHRRSEGELQKKRLERLRHTPTVTLDGT QIELQANIEMPEDAAAAVKAGAVGVGLFRSEFLFMNRRGALPDEEEQFRAYRTAVESM MGLPVTIRTIDIGADKPLDIRDDVFETAPNPALGLRAIRWSLSEPAMFLTQLRALLRA SAFGPIKILVPMLAHAREIDQTLELLARAKASLDADGLAYDPGIKVGAMIEIPAAVLI LPVFLRRMDFLSIGTNDLIQYTLAIDRADNAVAHLYDPLHPAVLQLIARTIREAHQAG KPVSVCGEMAGDASMTRLLLGMGLTEFSMHPSQLLSVKQQILRSDRPRLMREADRLLH ACEPAEIEEALGALARA" gene 223817..224092 /locus_tag="Rpic_0205" /db_xref="GeneID:6287935" CDS 223817..224092 /locus_tag="Rpic_0205" /note="PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rso:RSc0349 putative bacterioferritin-associated ferredoxin protein" /codon_start=1 /transl_table=11 /product="BFD domain protein (2Fe-2S)-binding domain protein" /protein_id="YP_001897800.1" /db_xref="GI:187927313" /db_xref="InterPro:IPR007419" /db_xref="GeneID:6287935" /translation="MYVCICNQVTDREIHGAARLGVSTMDELAETLGVGTCCGQCRDC AKQVLAEAVSCIPVDQTLGRASTHAIIERRDEPVANDQAIVAGALAA" gene 224241..224720 /locus_tag="Rpic_0206" /db_xref="GeneID:6286191" CDS 224241..224720 /locus_tag="Rpic_0206" /note="TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: rso:RSc0350 probable bacterioferritin BFR (cytochrome b-1) (cytochrome b-557) protein" /codon_start=1 /transl_table=11 /product="bacterioferritin" /protein_id="YP_001897801.1" /db_xref="GI:187927314" /db_xref="InterPro:IPR002024" /db_xref="InterPro:IPR008331" /db_xref="InterPro:IPR009040" /db_xref="InterPro:IPR014035" /db_xref="GeneID:6286191" /translation="MKGDKKVIQYLNAQLKNELTAINQYFLHARMYGHWGLKRIGDHE YKESIGEMKHADRLIERILMLDGLPNLQDLGKIFIGQDTKEIIECDLKLERAAHGTVV EGIAYCESVKDYVSREILVDILDDTEEHIDWLETQLELIDKVGIQNYLQSQMEPEGE" gene complement(224786..225535) /locus_tag="Rpic_0207" /db_xref="GeneID:6286192" CDS complement(224786..225535) /locus_tag="Rpic_0207" /note="PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: rso:RSc0351 molybdopterin biosynthesis protein MoeB" /codon_start=1 /transl_table=11 /product="UBA/THIF-type NAD/FAD binding protein" /protein_id="YP_001897802.1" /db_xref="GI:187927315" /db_xref="InterPro:IPR000594" /db_xref="InterPro:IPR007901" /db_xref="GeneID:6286192" /translation="MNDDQLLRYSRHILLDEIGIEGQTRLLESHALVIGAGGLGAAAL PYLAAAGIGTLTIVDDDTVDLTNLQRQIIHTTESVGQPKVASAQAAIARLNPDVRVHA VQRRLDTDAIGARLDGVSVVLDCSDNFGTRQATNLACVRAGVPLVSGAAIRFDGQISV FDSRAGGPCYACLFPPDEPAPDVACATMGVFSPLVGMVGTVQAAEALKLIAGIGSSLA GRLLMLDGLTMEWTTMRIARQPSCPVCGGMH" gene complement(225605..227221) /locus_tag="Rpic_0208" /db_xref="GeneID:6286193" CDS complement(225605..227221) /locus_tag="Rpic_0208" /EC_number="3.4.21.102" /note="KEGG: rso:RSc0352 putative carboxy-terminal processing protease transmembrane protein; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41" /codon_start=1 /transl_table=11 /product="carboxyl-terminal protease" /protein_id="YP_001897803.1" /db_xref="GI:187927316" /db_xref="InterPro:IPR001478" /db_xref="InterPro:IPR004447" /db_xref="InterPro:IPR005151" /db_xref="GeneID:6286193" /translation="MRTSLKNISLIAIGLVTGVLATLQLSATAQNATVGPLPLEKLRL MADIFGQIKREYVEPVDDDKLLTEAIKGMVASLDPHSAYLDKKDFQELQEGTQGRFAG LGIEISQEEGLVKVINPIEDTPAFRAGVQPGDLITRIDDKPVRGMPLEQAVKRMRGAP GTKVTLTIYRKKEERTFPLTITRAEIQVQSVKAKMLDNGIAWVRITSFQERTVPDLAK KLNDLAKQDPHLKGLILDLRNNGGGVLQAAVGVSAAFLPPDATVVSTNGQVPDAKRTY KATFANYRLSNLDSDPLVGLDPEFKTVPIIVLTNAYTASASEIVAGALQDHHRAKTMG KTTFGKGSVQTVRPLSNDTGIKLTIAYYYTPSGKSIQAKGIRPDIPVDQNPDGDPDDA LITREIDTERHLHNKQESEEAEMTEREKRRVEELRRLEEENAKKTPEQREKERNKKPI EFGSAEDFMLQQALADLKGQPVKRSKSVLEAAAAAVPDKAVKSPAAKDSSAPAKLPKG KATPASEPPAPKPNVPASGVQPAPEPTGAR" sig_peptide complement(225605..225694) /locus_tag="Rpic_0208" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.881 at residue 30" gene complement(227340..228095) /gene="gpmA" /locus_tag="Rpic_0209" /db_xref="GeneID:6286194" CDS complement(227340..228095) /gene="gpmA" /locus_tag="Rpic_0209" /EC_number="5.4.2.1" /note="KEGG: rso:RSc0353 phosphoglyceromutase; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase" /codon_start=1 /transl_table=11 /product="phosphoglycerate mutase 1 family" /protein_id="YP_001897804.1" /db_xref="GI:187927317" /db_xref="InterPro:IPR001345" /db_xref="InterPro:IPR005952" /db_xref="InterPro:IPR013078" /db_xref="GeneID:6286194" /translation="MAVMHKLVLIRHGESTWNLENRFTGWVDVDLTDTGVAQARQGGK LLREAGFTFDLAYTSVLKRAIRTLWHVQDEMDLMWIPTRNEWRLNERHYGALSGLNKA ETAAQYGDEQVLVWRRSYDTPPPALEPGADNDAFGNPRYAGLTREQVPLTECLKDTVA RVMPLWEESIAPAIKSGKRVVIAAHGNSIRALVKYLDGISDADIVGLNIPNGTPLVYE LDANLKPIRHYYLGDQEAIAASLAAVASQGKSK" gene 228261..228683 /locus_tag="Rpic_0210" /db_xref="GeneID:6288608" CDS 228261..228683 /locus_tag="Rpic_0210" /note="PFAM: Rhodanese domain protein; KEGG: rso:RSc0354 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="Rhodanese domain protein" /protein_id="YP_001897805.1" /db_xref="GI:187927318" /db_xref="InterPro:IPR001763" /db_xref="GeneID:6288608" /translation="MKFFADYNNLALLAVAIVSGLLLLWAPIQRRIAGGGGAKVGASA ATQLINRRNAVVVDVRENAEYAAGHLPQAKHAPLGELAGKAAGLAKNKETPIILVCQT GQRAGRAQAVLKQAGYSEVYSLEGGLAAWQQAGLPVVK" gene 228702..228959 /locus_tag="Rpic_0211" /db_xref="GeneID:6288609" CDS 228702..228959 /locus_tag="Rpic_0211" /note="TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: rso:RSc0355 probable glutaredoxin 3 (GRX3) protein" /codon_start=1 /transl_table=11 /product="glutaredoxin 3" /protein_id="YP_001897806.1" /db_xref="GI:187927319" /db_xref="InterPro:IPR002109" /db_xref="InterPro:IPR011767" /db_xref="InterPro:IPR011900" /db_xref="InterPro:IPR014025" /db_xref="GeneID:6288609" /translation="MAHVVMYSTTVCPYCVAAERLLKQRGVEQIEKILIDREPGKREE MMTRTNRRTVPQIYIDERHIGGFDDLSALDREGGLVPLLAA" gene 229120..229638 /locus_tag="Rpic_0212" /db_xref="GeneID:6288610" CDS 229120..229638 /locus_tag="Rpic_0212" /note="molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA" /codon_start=1 /transl_table=11 /product="preprotein translocase subunit SecB" /protein_id="YP_001897807.1" /db_xref="GI:187927320" /db_xref="InterPro:IPR003708" /db_xref="GeneID:6288610" /translation="MSDQQQQQPGQDGQPFFNIQRVYLKDLSLEQPNSPHIFLEQEQP SVEVQVDVAASQLAEGVFEVTVIGTVTTKVQEKVAFLVEAKQAGIFDIRNVPAEQMDP LLGIACPTIVYPYLRSNIADTIGRAGFQPIHLAEINFQALYEQRLAAAMEQQGQAGGT GLVMPDGSKATH" gene 229731..230762 /gene="gpsA" /locus_tag="Rpic_0213" /db_xref="GeneID:6288611" CDS 229731..230762 /gene="gpsA" /locus_tag="Rpic_0213" /EC_number="1.1.1.94" /note="catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate" /codon_start=1 /transl_table=11 /product="NAD(P)H-dependent glycerol-3-phosphate dehydrogenase" /protein_id="YP_001897808.1" /db_xref="GI:187927321" /db_xref="InterPro:IPR006109" /db_xref="InterPro:IPR006168" /db_xref="InterPro:IPR011128" /db_xref="GeneID:6288611" /translation="MLNTRMRISVLGAGAWGTALASHAAQSHDVMLWGRDANLVAQMA ATHINAPYLPGMTLRASLHFSADLQAALDHAAGDDALAVIASPVAGLADLTRTIAAHG GVRNVIWLCKGFDPETSALPHAIVADVLKVSGRTDLAVGVLSGPSFAKEVAQGLPCAM TVASTSDALCKLTQRGFHHHAMRVYASDDLVGVEVGGAVKNVLAIATGAADGLGLGLN ARAALVTRGLAEMTRLGLALGGRLETFMGLTGVGDLLLTATGDLSRNRTVGMQLAQGR TLDDILHSLGHVAEGVRCARAVAALARAKGVDMPITFTVCEVLFEGLPAAKAVERLLQ RDAKSESAR" sig_peptide 229731..229805 /gene="gpsA" /locus_tag="Rpic_0213" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.713 at residue 25" gene complement(230792..231262) /locus_tag="Rpic_0214" /db_xref="GeneID:6288036" CDS complement(230792..231262) /locus_tag="Rpic_0214" /note="TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: rso:RSc0358 putative tRNA/rRNA methyltransferase protein" /codon_start=1 /transl_table=11 /product="RNA methyltransferase, TrmH family, group 2" /protein_id="YP_001897809.1" /db_xref="GI:187927322" /db_xref="InterPro:IPR001537" /db_xref="InterPro:IPR004440" /db_xref="GeneID:6288036" /translation="MFNVILVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARM RRAGLDYHEYATMRVHADWDAFLRDAQPDPTRMFALTTRGSTPFASVAFQPGDWFVFG SETRGLSEERREWFPASQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQNGFAGGA" gene complement(231374..232096) /locus_tag="Rpic_0215" /db_xref="GeneID:6288037" CDS complement(231374..232096) /locus_tag="Rpic_0215" /note="KEGG: rso:RSc0359 putative competence protein F-related protein" /codon_start=1 /transl_table=11 /product="putative competence protein F-related protein" /protein_id="YP_001897810.1" /db_xref="GI:187927323" /db_xref="GeneID:6288037" /translation="MHKHALSAWFRAGLRHLLPCACALCGAVQGDLVCNGCTGDLASH LHRRRCIQCAIALDARHAARHCRTCLAGAPDFDATVVIADYAWPLDHLVTGLKFRAQL PLADWLAAQLGNALAAAPGDLPDMLLPVPLSPARLRSRGYNQAWEVARRIARRLDIPA HAGALQRVRDNVAQATLDRAERLANLHGAFVVAEPARIAGRHIGVVDDVMTTGTTLGE IATQLKRAGATRVTNVVALRTP" gene 232205..233146 /locus_tag="Rpic_0216" /db_xref="GeneID:6288038" CDS 232205..233146 /locus_tag="Rpic_0216" /note="PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rso:RSc0360 putative biotin synthesis protein (methyltransferase)" /codon_start=1 /transl_table=11 /product="Methyltransferase type 11" /protein_id="YP_001897811.1" /db_xref="GI:187927324" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="GeneID:6288038" /translation="MSDPVLARPAALRRAFDRRAARFADVDFLLREVGSRMQDRLSYI KATPVRALDLGCGLGQGLAVLRAQYPDAQICGVDWSSAMLAQAQKLDPQRTDAGWLGR LLKKRPVFDFAQADFRALPFAGASFDLLWSNLALHWDPAPHAIFPEWHRITTEGGLLM FSLFGPDTLRELRSALAGIDAGVHTLRFVDMHDIGDMLVHSRWSTPVMDMEQITITYE TPQALLADVHLLGGMAGLTDEAGHSLAGAGLHTPRWRQRLFDAFDAQRNPDGLIPLTF EIVYGHAWKLAPTQRQALDEQGRAMIPIDQIGRKPRA" gene 233339..233662 /locus_tag="Rpic_0217" /pseudo /db_xref="GeneID:6288039" gene 233773..235029 /locus_tag="Rpic_0218" /db_xref="GeneID:6288667" CDS 233773..235029 /locus_tag="Rpic_0218" /note="TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; cytochrome C oxidase subunit II transmembrane region; KEGG: rso:RSc0362 putative cytochrome c oxidase polypeptide II precursor (cytochrome AA3 subunit 2) transmembrane protein" /codon_start=1 /transl_table=11 /product="cytochrome c oxidase, subunit II" /protein_id="YP_001897812.1" /db_xref="GI:187927325" /db_xref="InterPro:IPR001505" /db_xref="InterPro:IPR002429" /db_xref="InterPro:IPR003088" /db_xref="InterPro:IPR008168" /db_xref="InterPro:IPR008169" /db_xref="InterPro:IPR009056" /db_xref="InterPro:IPR011759" /db_xref="InterPro:IPR014222" /db_xref="GeneID:6288667" /translation="MKMLNKTLASLLAAGSLLALSQTALAVEDMPGGPAVRQLNLAPP VTKIAAEIHWLHWMMLIICIVIFIGVFGVMFYSIFKHRKSVGHKPATFHESTTVEIIW TIVPFLIVIGMALPATKAVVAMKDTTNSDLTIKATGYQWKWGYDYLKGEGEGISFLST LTTPRDQINNQAPKSNTYLIEVDNELVVPVNRKVRIVTTANDVIHSWMIPAFGVKQDA IPGFVRDAWFKAEKVGVYRGQCAELCGKEHAFMPIVVRVLSQDDYTKWVDGKKKEMAA KADDPNKTYTLEELKSRGEKVYTANCAVCHQPNGKGGGPFPALDGSKIANGPLADHVG IVLHGKGAMPPWASALNDVEIAAVVTYERNNWGNHTGDLLQPTQVKDARGGKMPEGGA AKTATTESAGKVASKQANAAEDRNAG" sig_peptide 233773..233853 /locus_tag="Rpic_0218" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.993 at residue 27" gene 235070..236674 /locus_tag="Rpic_0219" /db_xref="GeneID:6288668" CDS 235070..236674 /locus_tag="Rpic_0219" /EC_number="1.9.3.1" /note="KEGG: rso:RSc0363 probable cytochrome c oxidase polypeptide I (cytochrome AA3 subunit 1) transmembrane protein; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I" /codon_start=1 /transl_table=11 /product="cytochrome c oxidase, subunit I" /protein_id="YP_001897813.1" /db_xref="GI:187927326" /db_xref="InterPro:IPR000883" /db_xref="InterPro:IPR014241" /db_xref="GeneID:6288668" /translation="MSTAVTHPQDHAHGHGDDHAHDHPHGWRRWLFATNHKDIGTLYL LFSFMMLLSGGTLALLIRLELFQPGLQFFHPELFNQFTTLHGLIMVFGAIMPAFVGFA NWMIPLQVGASDMAFARMNNFSFWLLPPAALLLVGSFFAPGGATAAGWTLYAPLSVQM GPGMDMAIFAIHIMGASSIMGAINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIA VMPVLAGAITMVLTDRHFGTSFFSAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVS QIVPAFARKPLFGYSSMVYATASIAILSFIVWAHHMFTTGMPVTGQLFFMYATMLIAV PTGVKIFNWVATMWRGSMTFETPMLFAIGFIFVFTVGGFTGLILAVAPIDIQLQDTYY VVAHFHYVLVAGSLFALFAGFYYWGPKWSGYMYSETRGKIHFWGSMITFNLTFFPMHF LGLAGMPRRYADYPQQFADFNAIASIGALGFGLMQVYFFFFVVLPSYRGGEKAADKPW DGAEGLEWTVPSPAPFHTFEEPPHVK" gene 236728..236859 /locus_tag="Rpic_0220" /db_xref="GeneID:6288669" CDS 236728..236859 /locus_tag="Rpic_0220" /note="KEGG: rso:RSc0364 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897814.1" /db_xref="GI:187927327" /db_xref="GeneID:6288669" /translation="MSNPEKSPTPEQRAANRRLGLILGTIALVFFLGVIFKRVVFGG" gene 236909..237517 /locus_tag="Rpic_0221" /db_xref="GeneID:6288670" CDS 236909..237517 /locus_tag="Rpic_0221" /note="involved in the insertion of copper into subunit I of cytochrome C oxidase" /codon_start=1 /transl_table=11 /product="cytochrome C oxidase assembly protein" /protein_id="YP_001897815.1" /db_xref="GI:187927328" /db_xref="InterPro:IPR001220" /db_xref="InterPro:IPR007533" /db_xref="GeneID:6288670" /translation="MSQTPAQPDPTQNDKALERGLNRSMLGKLAVVVAIMFGFGYAMV PLYKKICEITNINVLNTRDEDGGALRNSQVDKTRTITVEFDSNSQGPFRFRPVKNSMD VHPGEISQIVYEVVNKEGRTVEAQAIPSYAPKQATEFFKKIECFCFKQQTLTANESRE MPVVFVIDPDLPKDVKTITLSYTFFEIHAPSVIAPAMPNKGT" gene 237522..237734 /locus_tag="Rpic_0222" /db_xref="GeneID:6287025" CDS 237522..237734 /locus_tag="Rpic_0222" /note="KEGG: rso:RSc0366 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001897816.1" /db_xref="GI:187927329" /db_xref="GeneID:6287025" /translation="MDDLKEATKRRASFAQTMKAVFWSFFGVRKGRDHDRDMAQLNPV HVIVAGILAAVIFVVVLLLIVRAVVG" gene 237823..238683 /locus_tag="Rpic_0223" /db_xref="GeneID:6287026" CDS 237823..238683 /locus_tag="Rpic_0223" /note="PFAM: cytochrome c oxidase subunit III; KEGG: rso:RSc0367 probable cytochrome c oxidase subunit III transmembrane protein" /codon_start=1 /transl_table=11 /product="cytochrome c oxidase subunit III" /protein_id="YP_001897817.1" /db_xref="GI:187927330" /db_xref="InterPro:IPR000298" /db_xref="GeneID:6287026" /translation="MSANRANAPYYFVPGPSRHPITASLGLLIVLLSSAAWVNAQPWA PWTFLVGLLWFLFVLRAWFADAISESETGKYGDRVDASFRWSMSWFIFSEVMFFAAFF GALFYARTIAMPWLGDLNNKLLWPDFNALWPNAGPAGTVSPFTTMGPWPIPTINTALL LTSGVTLTWAHHALREGKRAQVIQGLLLTILLGFTFMGFQAFEYIHAYHELNLKLTSG IYGSTFFLLTGFHGFHVTMGAIMLSVVLGRVIKGHFTPEHHFAFEGAAWYWHFVDVVW LGLYVVVYWL" sig_peptide 237823..237939 /locus_tag="Rpic_0223" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.928) with cleavage site probability 0.748 at residue 39" gene complement(238809..239018) /locus_tag="Rpic_0224" /db_xref="GeneID:6287027" CDS complement(238809..239018) /locus_tag="Rpic_0224" /note="KEGG: rso:RSc0368 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001897818.1" /db_xref="GI:187927331" /db_xref="GeneID:6287027" /translation="MRIVVAIAFLLILGSLASALFFLMRDKGHSNRTVRSLMFRVGFS IALFIFILVANRLGWIHSTGIQFGQ" sig_peptide complement(238809..238868) /locus_tag="Rpic_0224" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.972) with cleavage site probability 0.752 at residue 20" gene 239088..239858 /locus_tag="Rpic_0225" /db_xref="GeneID:6287028" CDS 239088..239858 /locus_tag="Rpic_0225" /note="KEGG: rso:RSc0369 putative transmembrane cytochrome oxidase complex biogenesis factor transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane cytochrome oxidase complex biogenesis factor transmembrane protein" /protein_id="YP_001897819.1" /db_xref="GI:187927332" /db_xref="InterPro:IPR002994" /db_xref="GeneID:6287028" /translation="MTERVPMRRWFAPVPMLAGVALIALTSLLGRWQLTRAHERIERQ ARIMALENAPAQRITAQPVTADSVMYRPVLLRGTFDVAHTVLLENRPHVTNDVSRPGF EVLIPLMLEGAGGRAVLVDRGWLPRDPADRTRIAPYTTPAGEVQVEGMAVPHASRVFS LGSKDGADEVGQRLRQNIDLDAFSREIGVPLQPFVVQQQSDVEDGLLRDWPRADLGAE RNYGYAFQWFAMAAAVLGLMVFYSVRRYRRLAGTSEPA" gene 239911..240567 /locus_tag="Rpic_0226" /db_xref="GeneID:6288194" CDS 239911..240567 /locus_tag="Rpic_0226" /note="KEGG: rso:RSc0370 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001897820.1" /db_xref="GI:187927333" /db_xref="GeneID:6288194" /translation="MVNQESAPGAPGTLGSSEDPRIDARTRRGRLMMLFLLLVCASPV IASYLAYYVFTPAGGKAAYGALVDPQRPIPTGLMVQDEHGAEVPLASLKGKWLMVSVD GSACDDNCARKLFTMRQLRIGQGPDRDRIVPVWLVTDRGEIDPRLIKAYNDDYGAVRF LRAPDLPKNWLADGKTPPTDHLFLVDPLGNLMMQFPKDPDPKKVRADMTRLLKYSRIG" gene 240571..241662 /locus_tag="Rpic_0227" /db_xref="GeneID:6288195" CDS 240571..241662 /locus_tag="Rpic_0227" /note="PFAM: cytochrome oxidase assembly; KEGG: rso:RSc0371 putative heme O oxygenase (cytochrome AA3-controlling) transmembrane protein" /codon_start=1 /transl_table=11 /product="cytochrome oxidase assembly" /protein_id="YP_001897821.1" /db_xref="GI:187927334" /db_xref="InterPro:IPR003780" /db_xref="GeneID:6288195" /translation="MLLQLASIGILIALIPLCYVLVKGDRNKYRKLVWITAFLTLDLI MFGSFTRLTDSGLGCPDWPGCYGTSNPFHAREDIHAAQAAMPSGPVTWMKAWIEMTHR YFALALGVLIITLVVLAWVKRKELQQSPWYATAVLALVCVQGAFGAWTVTLKLQPAIV VTHLLLGMSLLAALIWLGCKNDAPRAVDARGASLRMAVAIGLVLLVVQIALGGWVSTN YAVLACTDFPLCNGQWVPPMDFAHGFTFWRQLGKTAGGDFISHDALVAIHWTHRVFAV VVLSYLAWLGARARRIGGLGRVATVLLVVLAVQLATGLSNIVLGWPLLAAVAHNGGAA VLLLLMVRLHYLIGLAQARAPMPVAAAVV" gene 241683..242624 /locus_tag="Rpic_0228" /db_xref="GeneID:6288196" CDS 241683..242624 /locus_tag="Rpic_0228" /note="converts protoheme IX and farnesyl diphosphate to heme O" /codon_start=1 /transl_table=11 /product="protoheme IX farnesyltransferase" /protein_id="YP_001897822.1" /db_xref="GI:187927335" /db_xref="InterPro:IPR000537" /db_xref="InterPro:IPR006369" /db_xref="GeneID:6288196" /translation="MNTVATPTTSTQLPGWRTTASQYAALTKPRVTQLAVFCAVIGMF LATPGMVPWSVLIGGAVGIWLFAGAAFAINCLVERKIDAMMRRTAWRPSASGELGTRQ ILVFSLVLGGAGMWTLHVFANDLTMWLTFATFIGYAIIYTLLLKPATPQNIVIGGLSG AMPPALGWAAVANSVPAEAWILVLIIFTWTPPHFWALALYRRADYAKSGLPMLPITHG EKYTLLHILLYTLIMIAATILPFVYGMSGYIYLVTALVLGFGFLSYAWRMYRKYSDAL AQKTFRYSIIYLSILFAALLVDHYFKFGPALTQSAAL" gene 242688..243299 /locus_tag="Rpic_0229" /db_xref="GeneID:6288197" CDS 242688..243299 /locus_tag="Rpic_0229" /note="PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; KEGG: rso:RSc0373 probable lipoprotein" /codon_start=1 /transl_table=11 /product="electron transport protein SCO1/SenC" /protein_id="YP_001897823.1" /db_xref="GI:187927336" /db_xref="InterPro:IPR000866" /db_xref="InterPro:IPR003782" /db_xref="GeneID:6288197" /translation="MTMLSFRYFRAALFAMLAVAVLALAACSDKPAFKNLDITGSKSF GTDFSLTDHTGKRRTLEDFRGKVVVMFFGYTHCPDVCPTTLAELRAVMDTLGKDADRV QVLFVTVDPERDTQDLLAKYVPAFDPRFIGLRPANETELKKVASDFKVFYSKVPGSSP DNYTMDHTAGSYMFDPKGNLRLFIKHGQGPEPIAHDIKQLLAD" sig_peptide 242688..242765 /locus_tag="Rpic_0229" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.474 at residue 26" gene complement(243366..244295) /locus_tag="Rpic_0230" /db_xref="GeneID:6289667" CDS complement(243366..244295) /locus_tag="Rpic_0230" /note="binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters" /codon_start=1 /transl_table=11 /product="RNA polymerase factor sigma-32" /protein_id="YP_001897824.1" /db_xref="GI:187927337" /db_xref="InterPro:IPR000943" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR012759" /db_xref="InterPro:IPR014284" /db_xref="GeneID:6289667" /translation="MNAVIPVNTVSAIATQPSGNAGNGWALAFPGNLGNIDAYIQSVN RVPMLSAEEEQRLAREYRDNDNLDAARRLVLSHLRLVVSIARGYLGYGLPHADLIQEG NIGLMKAVKRFDPDQGVRLVSYAMHWIKAEMHEYILKNWRMVKVATTKAQRKLFFNLR SHKQDAQATFTSDEIDAVAAELNVKGTEVREMETRLSGGDIALEGQMDDGEESFAPIA YLADTHNEPTRVIEARSNDRMQSEGIEAALAKLDDRSRRIIEARWLNVNDDGSGGSTL HELADEFGVSAERIRQIESAAMKKMKGALQAFA" gene complement(244494..247412) /locus_tag="Rpic_0231" /db_xref="GeneID:6289668" CDS complement(244494..247412) /locus_tag="Rpic_0231" /note="KEGG: rso:RSc0375 probable transmembrane protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein" /codon_start=1 /transl_table=11 /product="diguanylate cyclase with PAS/PAC sensor" /protein_id="YP_001897825.1" /db_xref="GI:187927338" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR000700" /db_xref="InterPro:IPR013655" /db_xref="InterPro:IPR013656" /db_xref="InterPro:IPR013767" /db_xref="GeneID:6289668" /translation="MVPRRPLVAIAGGIGFLLVLVGLTVMVGWLRHWPWAVKLGSDRL LIVFATGVNLTLLGAGLAALLVGTVRPNVRWADPVPRGLGGVVAVLSTLRLAEMITGW PIGLDFPGMHTWLDRQWVTGWIGGMHPSHALAMAASATALSLVPTLRKPHRARWFWGL VGLAMLLCAGDLLGRAMALEYLYPAWLVWRASDVAAICTLLVVMGVLCVAVVRQPGVL RLRLSPEDTIVWISGGCVVLAGLGATITAFIIQVDSVSLTFGTARARALSSYAEELDQ LLAMRAENPRLVAAATYIQEVLRHPTDNAARLRSESALQAYRQQGYSYLQLRTLADEG IVSLGTQTLEPELSIRLHAGLAPERVTLQWVHGFAMRTETPVMADGMQIGWLVAEQPL AHMTGRYASERGIGKTETLAMSGFDARGRAMSFPQRFDAYVFELPALTVDRRPLPSRL ALAGEAGYGQWQDIHGMPTSFSYTPIGHTGLALISKIASAELYAPMRVQFERLGAFML CLMIASVLVIRLTVRPFANRLAASERALRTANESLERRRDALRASREQLRLVADNVPA QLSYVDSDGIVRFASRTLLEAFGRSEGEMLDRHVRDIYAPEDYRTLLPYMTEVLAGYP VQFEITSMRTGVPRYLSGHYFPDYDDRGTLRGYFSVLQDLTARTAAELALARSERALK LVLDNAPLLVSHINPDGVFTFCNVTHARWLQRTPEEVCGQMPERVFTPGTYALLAPYM VRAQRGESVEFEITAPWYEKPHAAGPRNRTRHFRGQLVPDSAEAHDGRCGFYAFVQDV TAAKRSEMELSRMAHFDALTGLPNRYELYERLRAALERRQRLPAPLGVLYLDVDHFKH INDTYGHAAGDTVLVEVAHRLQRAVRRTDTVARLAGDEFIILLDPIDAPDDALHTAQK IVSAIRPPIHLSDGTVLHVTTSVGVACPGPEVHDPDAALREADRALYWAKSRGRNTAA" sig_peptide complement(244494..244577) /locus_tag="Rpic_0231" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.647) with cleavage site probability 0.579 at residue 28" gene 247654..248058 /locus_tag="Rpic_0232" /db_xref="GeneID:6289669" CDS 247654..248058 /locus_tag="Rpic_0232" /note="PFAM: OsmC family protein; KEGG: rso:RSc0376 hypothetical protein" /codon_start=1 /transl_table=11 /product="OsmC family protein" /protein_id="YP_001897826.1" /db_xref="GI:187927339" /db_xref="InterPro:IPR003718" /db_xref="GeneID:6289669" /translation="MSIVVSKDTEGLFRHKVTFPEGVTYTDVPKPTGEGSAPDPHAYF DAALASCKALTVTLYARQRKYPLDSIDVAVEHDGTQERQGRYRLRTVLTLHGNLTDEQ RADLLRVAGKCPVHKLMTEVEISVDTELAEHA" gene 248072..248941 /locus_tag="Rpic_0233" /db_xref="GeneID:6289670" CDS 248072..248941 /locus_tag="Rpic_0233" /note="PFAM: Pirin domain protein; KEGG: rso:RSc0377 putative pirin-like protein" /codon_start=1 /transl_table=11 /product="Pirin domain protein" /protein_id="YP_001897827.1" /db_xref="GI:187927340" /db_xref="InterPro:IPR003829" /db_xref="InterPro:IPR008778" /db_xref="GeneID:6289670" /translation="MTSIQHIIGPHVRDLGGFSVKRVLPSAARQTVGPFIFFDHMGPV NFAPGEGIDVRPHPHIGLATVTYLFDGSMVHRDSLGSVQTITPGDVNWMTAGNGIVHS ERSSPEGREKGARMHGIQTWVALPKDQEKVNASFAHHAAETLPKLECPGVQGVVIAGD AFGLTSPVKVSSRTLYVALELAAGASLVIPPEHADRGLYLVDGAVTIDGEALDPQHLA VLEPGGDVTLTAQASSRVMLLGGAPTDGHRHIYWNFVASDKADIEDAKQRWESDAFAH VPGETERIPLPSK" gene complement(248956..249966) /locus_tag="Rpic_0234" /db_xref="GeneID:6289543" CDS complement(248956..249966) /locus_tag="Rpic_0234" /note="PFAM: glycosyl transferase family 3; KEGG: rso:RSc0378 hypothetical protein" /codon_start=1 /transl_table=11 /product="glycosyl transferase family protein" /protein_id="YP_001897828.1" /db_xref="GI:187927341" /db_xref="InterPro:IPR000312" /db_xref="GeneID:6289543" /translation="MPAPPILPDTAAEDALANAPFPAARFIKEIGRGADGARALVKHD ARALFTAMLESRISDVQLGAILMAYRIKGETPEELDGMLEATHAHCRPLPAPDTPEHA LPVVIPSYNGARRQPNLVPLLAKLLAREGVPVLVHGIRRFDGRVTTAALFEALGWPLC EHMDDARERLERDRLAYVPIDVLSPELTALLDKREIVGLRNSAHTVVKMLQPVGGHAP HEALRLVSYTHPEYRDTLTDYFLRHPANVLLARGTEGEAVADARRGSAVEWLHDGAHE TVIEAVEGSSDAPPELPVGTDVAATARWIEAVLDGKQPVPEPIAKQVRAIVRCARPAQ AA" gene complement(250142..250945) /locus_tag="Rpic_0235" /db_xref="GeneID:6289544" CDS complement(250142..250945) /locus_tag="Rpic_0235" /note="KEGG: rso:RSc0379 putative nitrate ATP-binding ABC transporter protein; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="nitrate ABC transporter, ATPase subunits C and D" /protein_id="YP_001897829.1" /db_xref="GI:187927342" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR005890" /db_xref="GeneID:6289544" /translation="MTDKFLRIENVGQTFKTKRGPFVALRDINLTVARGECIALIGHS GCGKSTLLNLIAGLTRPTTGGLILAEREIAGPGPDRAVVFQNHSLLPWLTCFDNVYLA VERVFGKSETKAQLRDRTHAALALVGLSHAEQKYPHEISGGMKQRVGIARALSMEPKV LLMDEPFGALDALTRAHLQDELLKIVAATGSTVVMVTHDVDEAVLLADRIVMMTNGPA ATIGEVLTVDLPRPRDRMALAEDPTYHAYRTAVLDFLYRKQRHPVAEAA" gene complement(250963..251814) /locus_tag="Rpic_0236" /db_xref="GeneID:6289545" CDS complement(250963..251814) /locus_tag="Rpic_0236" /note="TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc0380 putative nitrate transmembrane ABC transporter protein" /codon_start=1 /transl_table=11 /product="nitrate ABC transporter, inner membrane subunit" /protein_id="YP_001897830.1" /db_xref="GI:187927343" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR005889" /db_xref="GeneID:6289545" /translation="MNTLVKTLSGVQSDAAPESRRFAVRDWFVAAVVRGFPPVLGLVL FVLAWQGIATAIPALPTPAVTWKAAVALFADPFYRNGPNDQGVGWNVLASLARVGAGF GMAAVIGIPAGFLIGRFAFLNAMASPIISLLRPVSPLAWLPIGLLLFKSANPAAIWAI FICSIWPMVINTAVGVTRVPQDYLNVARVLNLSEWKVFTRVLFPAVLPYMLTGVRLSI GTAWLVIVAAEMLTGGVGIGFWLWDEWNNLKVEHIVIAIFVIGVVGLLLEHALLAIAR RFSYDAV" gene complement(251870..253150) /locus_tag="Rpic_0237" /db_xref="GeneID:6289546" CDS complement(251870..253150) /locus_tag="Rpic_0237" /note="KEGG: rso:RSc0381 putative nitrate transporter protein" /codon_start=1 /transl_table=11 /product="putative nitrate transporter protein" /protein_id="YP_001897831.1" /db_xref="GI:187927344" /db_xref="GeneID:6289546" /translation="MAAPDKTDALVNPINPKRRSIMKAAATIAGGSAVALIDPLVRAG AWAAGSDAPEKTELKVGFIPLTDCASVVMASTLGLDKKYGIKITPSKEASWAGVRDKL VSGDLDAAHVLYGLIYGVQLGIGGPKKDMAVLMTLNNNGQAITLSSKLKEAGVKDGAS LKAVMAKDKREYVFAQTFPTGTHAMWLYYWLAAHGIHPLQDAKAITVPPPQMVANMRV GNMDGYCVGEPWGARAIADNIGFTAETTQAIWKDHPEKVLGTTAEFVQKYPNTARALT AAVLEASKFIDASASNRRKTAETIAAKSYVNTDMDIILDRMLGRYTNGLGKTWDDPDP MRFYHDGAVNFPYLSDGMWFLTQHKRWGLLKAHPDYLAVAKQVNRVDIFKQAATATGT PLPKSDMRTAKLIDGVVWDAKNPAAYADGFKLKA" gene complement(253722..254360) /locus_tag="Rpic_0238" /db_xref="GeneID:6288315" CDS complement(253722..254360) /locus_tag="Rpic_0238" /note="PFAM: ANTAR domain protein; KEGG: rso:RSc0382 probable response regulator transcription regulator protein" /codon_start=1 /transl_table=11 /product="response regulator receiver and ANTAR domain protein" /protein_id="YP_001897832.1" /db_xref="GI:187927345" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR005561" /db_xref="GeneID:6288315" /translation="MQAKPPTPSAPPAANHPAAPMRVLLVRDPLDAEQINLELIRAGL AEAGFVDVGLADADLTLPERIAETQPDMVIVASESAARDTIEHVCVATQHAPRPIVLF TDNDDATRIKTAFAAGITAYIVDGIKPTRVKAVLDVAYARFEHERELRAELDTAKTQL AERKVLERAKGMLMKQMNLSEDDAFKRLRKMAMDRNIKLVEAAQRVIDVMAG" gene 254508..255209 /locus_tag="Rpic_0239" /db_xref="GeneID:6288316" CDS 254508..255209 /locus_tag="Rpic_0239" /EC_number="5.3.3.10" /note="PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rso:RSc0383 hypothetical protein" /codon_start=1 /transl_table=11 /product="5-carboxymethyl-2-hydroxymuconate Delta-isomerase" /protein_id="YP_001897833.1" /db_xref="GI:187927346" /db_xref="InterPro:IPR002529" /db_xref="GeneID:6288316" /translation="MTDFVVTPPAVNGIPVRGGHGQFPVRRVYCVGRNYAAHAREMGS DPDREPPFFFCKPADAVRYVADGETGQFVYPTETKDCHYEIELVVAIGTGGRDIAVET AAHHVYGYAIGLDMTRRDLQNAAKKGGRPWETGKAFDGSAPIGPIVPAKDVAHPDKGA VTLSVNGREHQRGDLSDLIWSVPETIAYLSRLFELRPGDLIYTGTPEGVGPVVVGDLM VGKIDGVGELHVKVI" gene 255236..255886 /locus_tag="Rpic_0240" /db_xref="GeneID:6288317" CDS 255236..255886 /locus_tag="Rpic_0240" /note="TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: rso:RSc0384 probable maleylacetoacetate isomerase (glutathione transferase zeta 1) protein" /codon_start=1 /transl_table=11 /product="maleylacetoacetate isomerase" /protein_id="YP_001897834.1" /db_xref="GI:187927347" /db_xref="InterPro:IPR004045" /db_xref="InterPro:IPR004046" /db_xref="InterPro:IPR005955" /db_xref="GeneID:6288317" /translation="MSIKLYNYFRSSASFRVRIALEVKGLPYDYAPVHLLKGEQLAPD FVKLNPDALVPVLCDGNDVLNQSLAIVEYLEETHPEPTLLPGSASNRAHIRAIALAIA CEIHPLNNPRVLKYLKHTFNVEEEARNEWYRHWVKLGFAALETRLSQSPLTGAYCVGD TPTLADVCLVPQVFNGKRFDVAVEDYPTLARIFAHCMAQEAFQRAAPAAQPDAVSA" gene complement(255967..257151) /locus_tag="Rpic_0241" /db_xref="GeneID:6288318" CDS complement(255967..257151) /locus_tag="Rpic_0241" /note="KEGG: rso:RSc0386 putative cell division protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase" /codon_start=1 /transl_table=11 /product="signal recognition particle-docking protein FtsY" /protein_id="YP_001897835.1" /db_xref="GI:187927348" /db_xref="InterPro:IPR000897" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR004390" /db_xref="InterPro:IPR013822" /db_xref="GeneID:6288318" /translation="MFSFWKKRKAEPQPAAEPTPAAAPEAAQAPAPAAIPGPAPVPAP VAAPQPVAAPAPGPVAAPVHTAVPDAPAVQPPLDMQTDDIETVPTPAVIEQARKGWMS RLRSGLSKTSKGLTTLFVGVKVDEALFEELETALLMADAGVDATEYLLGELRRRIKAQ RIETAEGVKTALRDLLVELLHPLEKTMVLGREQPMVIMIAGVNGAGKTTSIGKLCKHF QTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQESGDPAAVIFDAVNAARARGI DIVMADTAGRLPTQLHLMEELKKVRRVTAKAMATAPHETLLVIDGNTGQNALAQVKAF DEALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFADAL LG" gene 257275..258708 /locus_tag="Rpic_0242" /db_xref="GeneID:6288525" CDS 257275..258708 /locus_tag="Rpic_0242" /note="PFAM: peptidase M16 domain protein; KEGG: rso:RSc0387 putative zinc protease protein" /codon_start=1 /transl_table=11 /product="peptidase M16 domain protein" /protein_id="YP_001897836.1" /db_xref="GI:187927349" /db_xref="InterPro:IPR001431" /db_xref="InterPro:IPR007863" /db_xref="InterPro:IPR011765" /db_xref="GeneID:6288525" /translation="MALAAGLLAGHVGAQELAAAPGRPVAAASSAKVGASQSDTHEYK LPNGLQLIVKEDHRAPTVAHMVWYHAGSIDEHNGTTGVAHMLEHMMFKGTKAVGPGEF SRRVAALGGRENAMTTRDFTMYFQQIEKSHLADVMGLEADRMANLQLTDKEFKPEMNV VKEERRMRIDDSARSTVYEQMLATLFNAAPYRNPTIGWPGDLDTMTVQDAQNWYHAWY TPNNVTVIVAGDVKPDEVFRLAQRTYGKLKPHALPRRYAQEEPKQIGVKRIWVKAPAE NPYVVLAYKVPRLSDVEKDVDPYALEVLSAVLDGYDNARLPSQLVKGEKRIADDVNAG YDGLNRGPSIFLMDGTPADGHTTAEIEQALRGQIERIAKEGVTDAELKRVKAQVVAAQ IYKRDSVFGQGMEIGMNEMSGLSWRSIDRQLEKIKGVTSAQIQHVAQTYFSEDNLVVA TLLPQPIDPNKPARKPVPGMRDEGGLR" gene 258708..260060 /locus_tag="Rpic_0243" /db_xref="GeneID:6288526" CDS 258708..260060 /locus_tag="Rpic_0243" /note="PFAM: peptidase M16 domain protein; KEGG: rso:RSc0388 putative zinc protease-like signal peptide protein" /codon_start=1 /transl_table=11 /product="peptidase M16 domain protein" /protein_id="YP_001897837.1" /db_xref="GI:187927350" /db_xref="InterPro:IPR007863" /db_xref="InterPro:IPR011765" /db_xref="GeneID:6288526" /translation="MRAMSLTLKTALVAIVAAAAQSALAALPIEHWTATTGARVYFVP SPSIPMLDINLDVDAGSRYEPAAKVGLASLTAGMLDKGVAAQGNAPARDEAAIADAFA DVGASFGGGAGGDRTSLRLRTLSDPVERGPAIALMTQIISAPTFPDAVLARDKQRLVA AIRESLTKPSVLAERAFGKAIYGTHPYGQTAAPETVESITRDDIVRYYQANYTAKRAV VTLIGAISRQEAEAIAEQITRGLPADGATPPALPDVKMPLAKAETIRIPHPAQQATII LGQPGIARGDKDYFPLLVGNYVLGGGGFSARLTNEVREKRGLTYSIGSYFAPAAQPGP FELALQTRKDQTEEALGVVRDTVAKFVADGPTDVELKAAKDNLVNGFPLRLDSNRKLL DNVANIGWYNLPLDYLDTWTQRIAAVTRDQVRTAFQRALQPQTMATIVVGGPEKAAAN" sig_peptide 258708..258785 /locus_tag="Rpic_0243" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 26" gene 260154..260810 /locus_tag="Rpic_0244" /db_xref="GeneID:6288527" CDS 260154..260810 /locus_tag="Rpic_0244" /note="TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: rso:RSc0389 hypothetical protein" /codon_start=1 /transl_table=11 /product="methyltransferase" /protein_id="YP_001897838.1" /db_xref="GI:187927351" /db_xref="InterPro:IPR002052" /db_xref="InterPro:IPR004398" /db_xref="InterPro:IPR016065" /db_xref="GeneID:6288527" /translation="MAPRTPSSKGPKAKTATSHARAPQQVRIIGGQYKRTPLPVIDAD GLRPTSDRVRETVFNWLGHDLTGWRCADIFAGTGALGFEAASRGAAHVTLVENHAQAV RALHAIRDKLGARMVDIVSGDAFAWLARQPDAALDAVFIDPPFAQDWTLRALEAAARV VKPGGVIYVEAAQQLADVSADSHGGEPAAGIGLPADLVLHKHLRAGAVHAHLLLRKNG" gene 261008..261511 /gene="coaD" /locus_tag="Rpic_0245" /db_xref="GeneID:6288528" CDS 261008..261511 /gene="coaD" /locus_tag="Rpic_0245" /EC_number="2.7.7.3" /note="Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA" /codon_start=1 /transl_table=11 /product="phosphopantetheine adenylyltransferase" /protein_id="YP_001897839.1" /db_xref="GI:187927352" /db_xref="InterPro:IPR001980" /db_xref="InterPro:IPR004820" /db_xref="InterPro:IPR004821" /db_xref="GeneID:6288528" /translation="MVIAVYPGTFDPFTRGHEDLVRRASNIFDELIVGVAQSPNKRPF FALEERIEIAREVLGHYPNVRVEGFSGLLKDFVRKNGARVIVRGLRAVSDFEYEFQMA GMNRYLLPDVETMFLTPSDQYQFISGTFVREIAVLGGDVSKFVFPSVEKWLKEKTGKT EGSGKSE" gene 261562..261825 /locus_tag="Rpic_0246" /db_xref="GeneID:6288146" CDS 261562..261825 /locus_tag="Rpic_0246" /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rso:RSc0391 probable ferredoxin protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain protein" /protein_id="YP_001897840.1" /db_xref="GI:187927353" /db_xref="InterPro:IPR001450" /db_xref="GeneID:6288146" /translation="MALMITDECINCDVCEPECPNGAISMGPEIYVIDPGKCTECVGH FDEPQCQQVCPVDCIPKDPAHEETHDQLMQKYTQLTSAPPRAA" gene complement(261893..262528) /locus_tag="Rpic_0247" /db_xref="GeneID:6288147" CDS complement(261893..262528) /locus_tag="Rpic_0247" /note="KEGG: rso:RSc0392 probable proline-rich transmembrane protein" /codon_start=1 /transl_table=11 /product="putative proline-rich transmembrane protein" /protein_id="YP_001897841.1" /db_xref="GI:187927354" /db_xref="GeneID:6288147" /translation="MTPFAILTSRPAVLAGLALGLAASLPVHAQVYRCSENGQTTYSD HPCGTRAKPVPLIDNTPSAADQKAARERASAEAAEVQQMETARRKAQAAEDAREAQMA AQAAEQARRDQRQKVVVAQEGVRYCHRVYVGPLPYPQPYPTPMPVIRQPPAPAAGALR QPGNGPKPFAQAPVAPTPIVPRPPHPHYPYYRIVCEPGYAYEGPEDLLPIQ" sig_peptide complement(261893..261982) /locus_tag="Rpic_0247" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 30" gene complement(262553..263155) /locus_tag="Rpic_0248" /db_xref="GeneID:6288148" CDS complement(262553..263155) /locus_tag="Rpic_0248" /EC_number="3.1.1.29" /note="Enables the recycling of peptidyl-tRNAs produced at termination of translation" /codon_start=1 /transl_table=11 /product="peptidyl-tRNA hydrolase" /protein_id="YP_001897842.1" /db_xref="GI:187927355" /db_xref="InterPro:IPR001328" /db_xref="GeneID:6288148" /translation="MIKLIVGLGNPGAEYAATRHNAGFWLVDQLARMGNVTLRNETRF HGYAARANLWGNEVWLLQPQTFMNRSGLATVALARFYKVMPDEILVVHDELDLPPGTV KLKLGGGSGGHNGLKDIAAHLTTQQFWRLRLGIGHPRNLLPPGTAASGQHDVANFVLK APRKEEQDLIDRAIDQSLDALPELIAGNAEKAMMRLHTAH" gene complement(263325..263951) /locus_tag="Rpic_0249" /db_xref="GeneID:6288149" CDS complement(263325..263951) /locus_tag="Rpic_0249" /note="the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L25/general stress protein Ctc" /protein_id="YP_001897843.1" /db_xref="GI:187927356" /db_xref="InterPro:IPR001021" /db_xref="GeneID:6288149" /translation="MKVVAFERSVQGTGASRRLRNSGKTPAIIYGAGAEPKLIELDHN ALYHALKKEAFHSSILDIEVAGKVEKALLRDFQLHPFKQLVLHVDFQRVSAKEKIHVK VPLHFLNQETAPGVKLGHGIVNHILNDVEVSCLPADLPEFIEVDLGTLEIGQTLHIAD LKLPKGVTILTHGGDENPAVANISVPAGEKSAAAEEGAAAAGEDKPAA" gene complement(264104..265054) /locus_tag="Rpic_0250" /db_xref="GeneID:6289085" CDS complement(264104..265054) /locus_tag="Rpic_0250" /EC_number="2.7.6.1" /note="catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP" /codon_start=1 /transl_table=11 /product="ribose-phosphate pyrophosphokinase" /protein_id="YP_001897844.1" /db_xref="GI:187927357" /db_xref="InterPro:IPR000836" /db_xref="InterPro:IPR000842" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR002375" /db_xref="InterPro:IPR005946" /db_xref="GeneID:6289085" /translation="MSSEGLMVFTGNANPKLAEAVVKHLGIPLGKALVGRFSDGEVQV EIQENVRGKHVFILQSTCAPTNDNLMELMVMVDALKRASARRITAAIPYFGYARQDRR PRSARVAITAKVVANMLEVAGVERVLTMDLHADQIQGFFDIPVDNIYASPILLEDLRK KNYEDLLVVSPDVGGVVRARALAKQLGVDLAIIDKRRPKANVAEVMNIIGEVDGRNCV IMDDMIDTGGTLCKAAQVLKERGAKQVFSYCTHPVLSGGAAARIADSALDEVVVTDTI PLREDAIKCGKIRQLSTAPLLAETFTRIVRGDSIMSLFAE" gene complement(265135..265211) /locus_tag="Rpic_R0001" /note="tRNA-Gln1" /db_xref="GeneID:6289086" tRNA complement(265135..265211) /locus_tag="Rpic_R0001" /product="tRNA-Gln" /db_xref="GeneID:6289086" gene complement(265262..266131) /gene="ipk" /locus_tag="Rpic_0251" /db_xref="GeneID:6289087" CDS complement(265262..266131) /gene="ipk" /locus_tag="Rpic_0251" /EC_number="2.7.1.148" /note="An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis" /codon_start=1 /transl_table=11 /product="4-diphosphocytidyl-2-C-methyl-D-erythritol kinase" /protein_id="YP_001897845.1" /db_xref="GI:187927358" /db_xref="InterPro:IPR004424" /db_xref="InterPro:IPR006204" /db_xref="InterPro:IPR013750" /db_xref="GeneID:6289087" /translation="MSSAPVELRDCPAPAKLNLFLHVVGRRPDGYHLLQTVFQLIDWS DTLHFARRPDRRLVRTTDILGVPADDDLVIRAARLLQAETGCTYGVDIAIEKRLPMGG GLGGGSSDAATTLLALNRLWGLDLPRAQLMKIGLKLGADVPFFVFGQNAFAEGIGEKL TPITLPPAAFVVIHPRVHVPTPAIFSDEGLTRDTPLTIITDFPDQQIVFAYGRNDLQA VAERKYGEIARALVWLRQFSPLARMTGSGACVFAPFDNVEHAQAVADQVPSEWEGRCA AGLTHHPLARFAV" gene complement(266146..266769) /gene="lolB" /locus_tag="Rpic_0252" /db_xref="GeneID:6286865" CDS complement(266146..266769) /gene="lolB" /locus_tag="Rpic_0252" /note="Incorporates lipoproteins in the outer membrane after they are released by the LolA protein" /codon_start=1 /transl_table=11 /product="outer membrane lipoprotein LolB" /protein_id="YP_001897846.1" /db_xref="GI:187927359" /db_xref="InterPro:IPR004565" /db_xref="GeneID:6286865" /translation="MAMRFAHALGALMLGAGCALFSGCASLRPANDLFAGTQDADTNI TRYQGRFSARYTQNNAEQSAVGSFLWRERGPDVQLELMSPLGQTLAIVSQSNQGATLE LPNQPPRRAPEVDTLMQDALGFSLPVSGLRDWLRARPAPGTPARVARDAQSRPETIEQ NGWTVHYVAWTDDGNNTDGAKVGIRRLDLDRPQGTNGPLSVRLVLDQ" sig_peptide complement(266146..266229) /gene="lolB" /locus_tag="Rpic_0252" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.979) with cleavage site probability 0.669 at residue 28" gene complement(266769..268706) /locus_tag="Rpic_0253" /db_xref="GeneID:6286866" CDS complement(266769..268706) /locus_tag="Rpic_0253" /note="PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rso:RSc0398 hypothetical protein" /codon_start=1 /transl_table=11 /product="Tetratricopeptide TPR_2 repeat protein" /protein_id="YP_001897847.1" /db_xref="GI:187927360" /db_xref="InterPro:IPR001440" /db_xref="InterPro:IPR013026" /db_xref="InterPro:IPR013105" /db_xref="GeneID:6286866" /translation="MPHALSRSPATQRPRRFLRSRTALLAALVVGGLTSLPAWSSQSV AGAPLIAQAAQEGGTGGRAAIQIERSRPRPGLLRSERTDLPRVALTEDIMYRVLASEV SLQRGLVEPAYRTYLGLAQDTRDPRFAQRATEIAFLTRSPAQALTATRLWVELSPTSM PARQVQQLLLVATGQWSEVEPMLQAQLNKVSPGQRADALLQLQQQMSKSSDPAGAVGA LQRIASHDMQRPETHLALARAKVAAKDTAGALTELDTALKLRPGYEDAAILAAELRAD SDPDAAITGLRSFLKAAPASIDGHLALARMYLVRNQQDKARAEFETLKKIAPNDARIT LALGLLNLQQRQYDDAERYLKEYVTATAKSPTLSPEPGYQGLAQLAEEKRDYAGALGW VDKITGSANGDTDGQTALAAGIKRGQLLGKLRRIDEAQQTFDELVADSEDVPDGPRRQ ALMDGIRQAEIGMLMDAKAYGRARARVNELLKNDPDNVEYSYQLAMLEEHDGHYDNME TLLRKVIDLRPGQAIGYNALGYSLADRSVRLQEAQELLEKAVSLAPDDPYIADSLGWV KYRRGDLPAATDILRKAWATAPQAEIGAHLGEVLWQSGKQDDARQIWTEASKLDVNDT TLRDTLRRFGQPVPNVPVSTN" sig_peptide complement(266769..266891) /locus_tag="Rpic_0253" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.773 at residue 41" gene 268808..269683 /locus_tag="Rpic_0254" /db_xref="GeneID:6286867" CDS 268808..269683 /locus_tag="Rpic_0254" /EC_number="3.2.2.23" /note="Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases" /codon_start=1 /transl_table=11 /product="formamidopyrimidine-DNA glycosylase" /protein_id="YP_001897848.1" /db_xref="GI:187927361" /db_xref="InterPro:IPR000191" /db_xref="InterPro:IPR000214" /db_xref="InterPro:IPR012319" /db_xref="InterPro:IPR015886" /db_xref="GeneID:6286867" /translation="MPELPEVEVTRLGLLPHITGRRIVRAVVRHHGLRWPVDPALPEL LAGLTVTRLLRRGKYLLIECVPEVEQSGRAADTVGGWLLIHLGMTGTLRVLETPVPPG LHDHVDIELAGATGVHVTLRYRDPRRFGAVLWHAGDEAGLAEHPLLRNLGIEPFDARF DGDWMFARTRGRRVAIKSALLAGDIVVGVGNIYCSESLFRAGIRPTTAAGRISRPRYA ALADAIRATLADAIARGGSTLRDFVGSDGQSGYFQLEAFVYDRAGLPCRACGTPIRQI VQGQRSTFCCPTCQR" gene 269969..271915 /locus_tag="Rpic_0255" /db_xref="GeneID:6286868" CDS 269969..271915 /locus_tag="Rpic_0255" /note="KEGG: rso:RSc0400 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897849.1" /db_xref="GI:187927362" /db_xref="GeneID:6286868" /translation="MMNNTLSTQFEQYSAWRASVLQSVGEFQDWLQAQELYDAQADMR AQRIRGVLRSDKLKVAFIAEFSRGKSELINAIFFADFGRRILPSSAGRTTMCPTELMY DESYPPSIRLLPIETRLHDASTADFRDAGSHWLSVPLDPSSPEGMLEAFRHVVETVRV PKEEAEQLGLYNDADPDAAFSVDAAGTVEVSKWRHAIINFPHPMLKQGLVILDTPGLN AIGTEPELTLRLIPDAHVVVFVLAADAGVTKSDLELWRSHVGGGQRKGCIAVLNKVDG LWDPLKSEEEVENEVSRQIMTTAQVLDIDVERVYPVSAQKGLVAKVSHDHELLAKSRL LELESVLSDQLIPQRREIVTEQVQLAVKDMATGAQQLLQMRRRDIVEQLFELRGLRGK NHTMVKHMLMRVQGEKEEFEQSIAKFQALRTVFGRHSAEIIKSVQLKQIRSTMREARE KMKERVFSRGLRDDMDKLFGHLTGLVRDAANRIDQLHQMVDGMYKKFNAEHGFTLSPP LRFLGTRYDADLKETLMLAHNHFGAFSFLTRPKPQLVHGAFSTVASRVLDTFQDMNRD IEIWLKSVMTPLEAQVRDHQKQLRKRVDSIERIHEATDTLEARITELEALLNTLDERS GTIAQYTDRILAAGTILERQSFAA" gene 272019..273167 /locus_tag="Rpic_0256" /db_xref="GeneID:6287983" CDS 272019..273167 /locus_tag="Rpic_0256" /note="TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: rso:RSc0401 probable A/G-specific adenine glycosylase protein" /codon_start=1 /transl_table=11 /product="A/G-specific adenine glycosylase" /protein_id="YP_001897850.1" /db_xref="GI:187927363" /db_xref="InterPro:IPR000445" /db_xref="InterPro:IPR003265" /db_xref="InterPro:IPR004036" /db_xref="InterPro:IPR005760" /db_xref="GeneID:6287983" /translation="MTASPRRTRRVAQPVPVLPPLPDDFATRVIAWQQRHGRHHLPWQ NTGDAYRTWLSEIMLQQTQVSAVLGYYARFIERFPTVQALAAAPADDVMAAWAGLGYY TRARNLHRCAQIVVAEHGGIFPRDPDVLVALPGIGRSTAAAIAAFSYGVRAAILDGNV KRVFARAFGIDGFPGDKRVEDTMWRIAETVLPPAEGIQPYTQGLMDLGATVCTRGKPA CLTGERACPLESLCEARSTGRVMELPVPRPRKAIPERAATLVIALHADAVLLQRRPQR GIWGGLWSLPLVGEMDDALDAHPLNVDTVRRAAQAYGAVSTLEMAGALTHTFTHFRLQ MHLLRAEIASPAALGDDWRWIPLAQLNSVGLPAPVKLALETLVQPSLI" gene complement(273198..273851) /locus_tag="Rpic_0257" /db_xref="GeneID:6287984" CDS complement(273198..273851) /locus_tag="Rpic_0257" /note="PFAM: peptidase S16 lon domain protein; KEGG: rso:RSc0402 hypothetical protein" /codon_start=1 /transl_table=11 /product="peptidase S16 lon domain protein" /protein_id="YP_001897851.1" /db_xref="GI:187927364" /db_xref="InterPro:IPR003111" /db_xref="GeneID:6287984" /translation="MQEDIALSPFSPLPPLPTELPLFPLHTVLFPGGLLPLRIFEARY MDMVRTCLRDKTPFGVCLIERGNEVATTDGTTVPVDVGCIAHIVECDMEQLGLLMIKV RGTQRFKVLSFETTPDGLMRGTVEPIGADVEDCKGELFDDCVGALRRIITTLGSREDG NVPMVEPYEWNSPSWVANRLCELLPVPLKAKQKLMELMDAGMRIEIVHRYMKQHHIL" gene complement(273954..274847) /locus_tag="Rpic_0258" /db_xref="GeneID:6287985" CDS complement(273954..274847) /locus_tag="Rpic_0258" /note="PFAM: conserved hypothetical protein; KEGG: rso:RSc0403 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897852.1" /db_xref="GI:187927365" /db_xref="InterPro:IPR005337" /db_xref="GeneID:6287985" /translation="MRIILITGMSGSGKSVALNVLEDAGYYCVDNLPAQFIPELARYL ADQGYTHLGVATDIRSRESLRKVPETVTVLRKEHDVRMLFLTASTTALVQRYSETRRR HPLSIRNGRPDTAANVQAAAKGLDTSLIEAIEMERELLSPLADPAHRIDTSTLRTNAL RAYIKEFISDEPHDITLMFESFGFKHGVPTDADLVFDVRSLPNPYYDTQLRPLTGRDQ PVIDFLQSQPMVLAMAEDIRAYVEKWLPSFIADNRSYLTVAIGCTGGQHRSVYIAERL ATYFRAHGNVLVRHRELAVDG" gene complement(274942..275283) /locus_tag="Rpic_0259" /db_xref="GeneID:6287986" CDS complement(274942..275283) /locus_tag="Rpic_0259" /note="KEGG: rso:RSc0404 hypothetical signal peptide protein" /codon_start=1 /transl_table=11 /product="conserved hypothetical signal peptide protein" /protein_id="YP_001897853.1" /db_xref="GI:187927366" /db_xref="GeneID:6287986" /translation="MKQLIAACALALPFLAGQAFAQGSAPAAAPAAPAAAPAAKNSQQ DKMKQCNMDAAGKKGDERKAFMKGCLSDKPAAAAKPMTQQEKMAACSKANKGKKGDEY KNAQKACLSNG" sig_peptide complement(274942..275007) /locus_tag="Rpic_0259" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 22" gene complement(275471..276445) /locus_tag="Rpic_0260" /db_xref="GeneID:6289262" CDS complement(275471..276445) /locus_tag="Rpic_0260" /note="catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system" /codon_start=1 /transl_table=11 /product="HPr kinase/phosphorylase" /protein_id="YP_001897854.1" /db_xref="GI:187927367" /db_xref="InterPro:IPR011104" /db_xref="GeneID:6289262" /translation="MELTGVIAQSIFDDNAADLKLSWVAGLEGADRAFDVDFAKEATS AADLVGHLNLIHPNRIQVLGKPEITYYQRLSEENRKRQMGELILLEPPFLVVADGVDP PPDLELRCTRSSTPLFTSPISSAAVIDHLRLYLSRISAPRVTMHGVFLDILGMGVLIM GDSGLGKSELGLELISRGHGLVADDAVDFVRLGPDFIEGRCPPLLQNLLEVRGLGLLD IKTIFGETAVRRKMKIKLIVQLVRRNDGEFERLPLDSQYLDVLGLPIHMVKIQVAAGR NLAVLVEAAVRNTILRLRGIDTLRDFMDRQRAAMQAEAASHSPQGRLL" gene complement(276519..276974) /locus_tag="Rpic_0261" /db_xref="GeneID:6289263" CDS complement(276519..276974) /locus_tag="Rpic_0261" /note="TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: rso:RSc0406 putative nitrogen regulatory IIA (enzyme IIA-NTR) (phosphotransferase enzyme II, A component) transcription regulator protein" /codon_start=1 /transl_table=11 /product="PTS IIA-like nitrogen-regulatory protein PtsN" /protein_id="YP_001897855.1" /db_xref="GI:187927368" /db_xref="InterPro:IPR002178" /db_xref="InterPro:IPR006320" /db_xref="GeneID:6289263" /translation="MNRLAKLLPPGNIALDVSVTSKKRVFEQAGLLFENNHGVARAVV TDNLFARESLGSTGLGAGVAIPHGRIKGLKQPLAAFMRLSEPVPFESPDGKPVSLLIF LLVPEQATQQHLEILSEIAQLLSDRDMREGLATLPSPEAIHQLLTDWRP" gene complement(277321..277674) /locus_tag="Rpic_0262" /db_xref="GeneID:6289264" CDS complement(277321..277674) /locus_tag="Rpic_0262" /note="TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: rso:RSc0407 putative sigma-54 modulation protein" /codon_start=1 /transl_table=11 /product="sigma 54 modulation protein/ribosomal protein S30EA" /protein_id="YP_001897856.1" /db_xref="GI:187927369" /db_xref="InterPro:IPR003489" /db_xref="GeneID:6289264" /translation="MNFKLSGHHLDITPALREYVETKLERVIRHFDQVIGVSVLLSVD NHKEKDRRQYAEINLHLKGKDVFVESHHEDLYAAIDLLVDKLDRQVIKYKDRVQGHDR DSMKHQAFQAVQMQQ" gene complement(277725..279236) /locus_tag="Rpic_0263" /db_xref="GeneID:6289265" CDS complement(277725..279236) /locus_tag="Rpic_0263" /note="sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen" /codon_start=1 /transl_table=11 /product="RNA polymerase factor sigma-54" /protein_id="YP_001897857.1" /db_xref="GI:187927370" /db_xref="InterPro:IPR000394" /db_xref="InterPro:IPR007046" /db_xref="InterPro:IPR007634" /db_xref="GeneID:6289265" /translation="MKQSLQLRLSQHLALTPQLQQSIRLLQLSTIELQQEVEQALTEN PLLERENEWLDTSARIGADGSLNALQSNSATPLPTESPPPAPNGGDSSDSSDSSYENG HDNGADFDSDYGSDRSDWSLDDFARKPQSDEDDRAPLQLREAEQSLREFLMEQLAPLK LSMRDKGLVIFLIESLDDEGYLSGTLDEILADLPPELEVELDELQAALRMLQSFDPPG IGARSAAECLSLQLHRLDSPAKGLALIIVNQHLELLAARDYTRLKKALCVDEPTLKAA HELIRSLAPFPGHAFGRAEADFVVPDVIVRKTSAGWMAQLNPDVMPRLRINDMYAQIL RSSRGESGAANLQQKLQEARWLIKNIQQRFDTILRVSQAIVERQKSFFTHGEIAMRPL VLREIADTLGLHESTISRVTTNKYMATPMGTFELKYFFGSHVSTETGGAASSTAIRAL IKQLVGAEDPKNPLSDSRIAELLGEQGFVVARRTVAKYREALKIPAVNLRKSL" gene complement(279333..280121) /locus_tag="Rpic_0264" /db_xref="GeneID:6288287" CDS complement(279333..280121) /locus_tag="Rpic_0264" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc0409 probable ATP-binding ABC transporter protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_001897858.1" /db_xref="GI:187927371" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:6288287" /translation="MSATTLAPKTAAPQATTSSTLVVRHLKKRYGTRTVVKDVSLDVK SGEVVGLLGPNGAGKTTSFYMIVGLVALDAGDIVLDGEHISRLPIHQRARMGLSYLPQ EASVFRKLNVQENIRAVLELQEQNGKKLSQDEVNRRLDGLLDDLQIAHLRDNPALSLS GGERRRVEIARALASSPRFILLDEPFAGVDPIAVGEIQRIVSFLKDRNIGVLITDHNV RETLGICDHAYIISEGTVLAAGMPEQIIENEDVRKVYLGDNFRM" gene complement(280152..280739) /locus_tag="Rpic_0265" /db_xref="GeneID:6288288" CDS complement(280152..280739) /locus_tag="Rpic_0265" /note="TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: rso:RSc0410 putative signal peptide protein" /codon_start=1 /transl_table=11 /product="lipopolysaccharide transport periplasmic protein LptA" /protein_id="YP_001897859.1" /db_xref="GI:187927372" /db_xref="InterPro:IPR005653" /db_xref="InterPro:IPR014340" /db_xref="GeneID:6288288" /translation="MTLSLRAAGLAIVAALLLPALPAHAERADRDKPLVLEADNASYD DLKQVYHLTGNVVLTKGTMVLRSDQADLRTDPEGYNYAVATSKPGNLAFIRQKRDNVD EYIQGWGERIEYDGKQEISKLITRARMERLQGATQLDEIRGAVITYDGQKEFYTASGG AENATAANPSGRVRAVLAPRTSAPAAPASAPAAKP" sig_peptide complement(280152..280229) /locus_tag="Rpic_0265" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 26" gene complement(280799..281431) /locus_tag="Rpic_0266" /db_xref="GeneID:6288289" CDS complement(280799..281431) /locus_tag="Rpic_0266" /note="PFAM: protein of unknown function DUF1239; KEGG: rso:RSc0411 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1239" /protein_id="YP_001897860.1" /db_xref="GI:187927373" /db_xref="InterPro:IPR010664" /db_xref="GeneID:6288289" /translation="MASERSQRLVSSVLQIMLRGLPILLMAIVCGVTFLLVQVNTPQT DEAATQPKRHTADYTMDGISATALDETGTTKYRFTGVHMNHYEDDLTYDVTYPALRVY APDRPQVTARADLGKMNGDGTVVDLYNNAKVIRAQGSDARQDPLMTADSTYFQVLLND DIVRTDKPVELHRGPSIMNANGLTFNNVTRQVQLLGNVRGRIEGLGAPKQ" gene complement(281436..282032) /locus_tag="Rpic_0267" /db_xref="GeneID:6288290" CDS complement(281436..282032) /locus_tag="Rpic_0267" /EC_number="3.1.3.45" /note="TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: rso:RSc0412 hypothetical protein" /codon_start=1 /transl_table=11 /product="3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family" /protein_id="YP_001897861.1" /db_xref="GI:187927374" /db_xref="InterPro:IPR006549" /db_xref="InterPro:IPR010023" /db_xref="GeneID:6288290" /translation="MITLAPFPTDSVHSNIDARFPQAMERAARVRLMVFDVDGVLTDG RLLVGPEGEISKAFDTLDGHGIKLLAQAGVTPAIITGRQSEIVAWRAGELGIEHLYQG VADKREAFAHLLAATQLQAADAGYMGDDWPDLPVMTMAGFTACPAQAHAELRSRAHYV AQATGGRGAVREVADLILKAQGAYDALLAQLLQAPQPF" gene complement(282049..283032) /locus_tag="Rpic_0268" /db_xref="GeneID:6286605" CDS complement(282049..283032) /locus_tag="Rpic_0268" /EC_number="5.3.1.13" /note="KEGG: rso:RSc0413 hypothetical protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS)" /codon_start=1 /transl_table=11 /product="KpsF/GutQ family protein" /protein_id="YP_001897862.1" /db_xref="GI:187927375" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR001347" /db_xref="InterPro:IPR004800" /db_xref="GeneID:6286605" /translation="MIANFNPDRALALAQQTFDIEARAVLGLKTQVSADFARAVEMVL GCTGRVVVSGMGKSGHVARKIAATLASTGTPAFFVHPAEASHGDLGMVTRDDVFIGFS NSGEVSELNVILPLVKRMGAKLIAVTGNPGSSLGKHADVVLNSHVDVEACPLNLAPTA STTAQIALGDALAVAVLDARGFGAEDFARSHPGGSLGRKLLTHVRDVMRAGDAIPRVD QDTPLSQALMEITRKGMAMTAVVDAQGHAVGVFTDGDLRRLLETPRDWRTVPINEVMH RNPRSIGPDQLAVEAVEVMETHRINQLLVVDAAGLLVGALHIHDLTRAKVI" gene 283343..285322 /locus_tag="Rpic_0269" /db_xref="GeneID:6286606" CDS 283343..285322 /locus_tag="Rpic_0269" /note="PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: rso:RSc0414 putative glutathione-regulated potassium-efflux system K+/H+ antiporter transmembrane protein" /codon_start=1 /transl_table=11 /product="sodium/hydrogen exchanger" /protein_id="YP_001897863.1" /db_xref="GI:187927376" /db_xref="InterPro:IPR003148" /db_xref="InterPro:IPR006037" /db_xref="InterPro:IPR006153" /db_xref="GeneID:6286606" /translation="MHSPLELTLVLLAAAVIGVVLFRMLQLPPMLAYLVVGVLIGPKA TGLESDSAQTRYLAEFGVVFLMFSIGLEFNLSKLRSMRRLVLGLGASQVGLTILLTIP VSMVLSHWYPLSWQAGLALGGALAMSSTAIVSKMLAERLQLETEHGRNIISVLLFQDL AVVLLLIVVPSLGKNPTDLVLALSIAALKITVALVLILFLGQKLLSRWFHLVAARRSQ ELFMLNLLLVTLGMAALTERLGLSMALGAFLAGMLVSETPYKLQVEEDIKPFRDVLLG LFFVTVGMLLDPRVVFEHWALVLGLVMAPVLFKFVLIALLARVFGSGGGAAIRTALGL AQAGEFGFVLLNQIDGMRLIDPLLGQAILAAMLLSMLLAPFLIQYSDVIAMRLSRTDW LMQSLAMTKIAAQSIATERHVIICGYGRSGQNLAHMVEQEGIGYVALDLDPDRVRDAA AAGEHVVYGDAARRESLVAAGIHRAAAVAITYADTASALKVLHHVQALEPTLPVIVRT IDDADLDRLQQAGATEVVPEIIEGSLMLASHALVLLGVPLRRVVRRAQEMRDARYSLL RGYFHGQDDEEDMLERDAVRLHSVPLAKGSPAIGRKLGTMGLETFKTSVTAIRRQGIR ALDPDPDTVLELGDIVVLRGTPEGLQMAEERLSPR" gene complement(285332..285736) /locus_tag="Rpic_0270" /db_xref="GeneID:6286607" CDS complement(285332..285736) /locus_tag="Rpic_0270" /note="KEGG: rso:RSc0415 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897864.1" /db_xref="GI:187927377" /db_xref="GeneID:6286607" /translation="MCEIFIRANPHSYDSLARSLRLHGVATSVRLECLFWEVLEEIGQ RDGLTVNQLISKLYDELFERRGEVANFASFLRVCCLRYLMLKQDGRIPADTRVSISSL DAAAVLDGLPPNMADAPPPRRSRGPLLESLVK" gene complement(285777..286355) /locus_tag="Rpic_0271" /db_xref="GeneID:6286608" CDS complement(285777..286355) /locus_tag="Rpic_0271" /note="TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: rso:RSc0416 hypothetical protein" /codon_start=1 /transl_table=11 /product="intracellular protease, PfpI family" /protein_id="YP_001897865.1" /db_xref="GI:187927378" /db_xref="InterPro:IPR002818" /db_xref="InterPro:IPR006286" /db_xref="GeneID:6286608" /translation="MAKKILMLVGDYVEDYEVMVPFQALQMVGHTVHAVCPDKRAGDS VATAVHDFEGAQTYSEKPGHRFTVNATFADVDPAAYDALVVPGGRAPEYLRLNARVLE VVRHFFQADKPVAAICHGAQLLSAAGVLEGKACSAYPACGPEVTAAGGTFKDIPVDQA HTDGKLVTAPAWPAHPAWLAQFLEVLGTRVLH" gene 286464..287072 /locus_tag="Rpic_0272" /db_xref="GeneID:6289167" CDS 286464..287072 /locus_tag="Rpic_0272" /note="catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis" /codon_start=1 /transl_table=11 /product="adenine phosphoribosyltransferase" /protein_id="YP_001897866.1" /db_xref="GI:187927379" /db_xref="InterPro:IPR000836" /db_xref="InterPro:IPR002375" /db_xref="InterPro:IPR005764" /db_xref="GeneID:6289167" /translation="MSQVPHHQAALLTPSSVPASTELGDVSRYLRDRIRTVPDWPQAG VMFRDITPLLQDPKSLRVLVDVFVHRYMGQGLNLVAGIDARGFILGSIVAYELNLGFV PIRKKGKLPFNTVAEEYMLEYGSATVEIHADACKPGDRVLLIDDLIATGGTMLADKRL LERLGATVVEGAAIVDLPELGGSQLLIEGGLPLFTVCRFDGH" gene 287198..287815 /locus_tag="Rpic_0273" /db_xref="GeneID:6289168" CDS 287198..287815 /locus_tag="Rpic_0273" /note="PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rso:RSc0418 probable transport transmembrane protein" /codon_start=1 /transl_table=11 /product="Lysine exporter protein (LYSE/YGGA)" /protein_id="YP_001897867.1" /db_xref="GI:187927380" /db_xref="InterPro:IPR001123" /db_xref="GeneID:6289168" /translation="MPHVWLFLLTSIAITVMPGPDNLQVIARGASQGRKAGLTAAAGF ASGCLFHTTLAALGLAAVLQSSPVAFQAIRWLGAAYLIWLGIQALRSKGGGLGHAGPQ AAPGLWQVYRQSVFANLLNPKVTLFFVVFLPQFVDAQAGHAALRMLLLGGVFMAQTIV VFSAYGWCAAALGGWMRRTPRASLWLDRLSGCIFIGLGLRVALTK" gene complement(287846..288331) /locus_tag="Rpic_0274" /db_xref="GeneID:6289169" CDS complement(287846..288331) /locus_tag="Rpic_0274" /note="PFAM: protein of unknown function DUF355; KEGG: rso:RSc0419 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF355" /protein_id="YP_001897868.1" /db_xref="GI:187927381" /db_xref="InterPro:IPR007153" /db_xref="GeneID:6289169" /translation="MDLTVVPIVKPEATNFIFGQSHFIKTVEDLHEALVGAVPGIRFG IAFCEASGKRLVRWSGNDETALQLARDNALAIGAGHTFLIFLGDGFFPVNVLAAVRAV PEVCRIYCATANPTQVIVAQTELGRGVLGVVDGASPLGVETDADIAWRKDLLRQIGYK L" gene complement(288415..291279) /locus_tag="Rpic_0275" /db_xref="GeneID:6289170" CDS complement(288415..291279) /locus_tag="Rpic_0275" /note="TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: rso:RSc0420 probable excinuclease ABC subunit A (DNA repair ATP-binding) ABC transporter protein" /codon_start=1 /transl_table=11 /product="excinuclease ABC, A subunit" /protein_id="YP_001897869.1" /db_xref="GI:187927382" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR004602" /db_xref="GeneID:6289170" /translation="MDEIKIRGARTHNLKNINLDLPRNQLIVITGLSGSGKSSLAFDT LYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVT EIHDYLRLLYARAGTPYCPDHGQPLEAQSVSQMVDAVLALPADTKLMILAPVVANRKG EHVDLFEAMQAQGFVRFRIRSGGGTAHEAEAKVYEVDNLPKLKKNDKHSIEVVVDRVK VNPELKQRLAESFETALRLADGRAIALEMDTGKEHGFSSKFACPICSYSLQELEPRLF SFNNPMGACPHCDGLGQITFFDPKRVVAFPNLSLASGAIKGWDRRNQFYFQMLQSLAA FYDVDIDVAFEDLPAEIQEIVLHGSGKQQIPFTYINERGKTTVREHAFEGIIPNLERR YKETDSIAVREELAKYQNNQPCPECHGTRLRREARFVKIGEADQARGIYEINGWPLRD ALTYFLTLNMHGAKREIADKIVKEISARLNFLNNVGLDYLSLERSADTLSGGEAQRIR LASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRDLGNSVLVVEHDEDMIRAS DYVVDIGPGAGVHGGQIIAEGTPQQVEQSPASLTGDYLSGKRRIEVPKQRTAPDEERW LRIINASGNNLKNVSADIPIGLLTCITGVSGSGKSTLINDTLYHAVARHLYGSTPEPA AHDRIDGLEHFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPSAKERGYDPG RFSFNVKGGRCEACQGDGVLKVEMHFLPDVYVPCDVCHGKRYNRETLEVLYKGKNITE VLEMTVEQAHEFFAPVPVVRRKLQTLLDVGLGYIRLGQSATTLSGGEAQRVKLSLELS KRDTGRTLYILDEPTTGLHFHDIELLLKVIYKLRDHGNTIVIIEHNLDVIKTADWLLD LGPEGGAGGGQIIAKGTPEDVAKSKASFTGKYLAPLLKRK" gene 291522..292685 /locus_tag="Rpic_0276" /db_xref="GeneID:6287292" CDS 291522..292685 /locus_tag="Rpic_0276" /note="PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc0421 putative multidrug-efflux transporter transmembrane protein" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_001897870.1" /db_xref="GI:187927383" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:6287292" /translation="MNGLELRAAASLAGIFALRMLGLFMIMPVFAVFAKTLPDGNNTQ LVAFAIGVYGLTQAVLYIPYGWLSDRFGRKPVIVTGLVIFAVGSLVAAFSHSVAGIAV GRAIQGAGAISSAVIAFVADLTREEHRTKAMAMIGGSIGLSFAVAIVSAPVIFRWVGM PGMFTAIGVLAIVAIGVVLWVVPNPPRPPEHVKAPFREVLRHPELLRLNFGVFALHAT QTALFVVLPHMLEAAGLPVDSHWKIYLPVMGVSFVLMVPAIIAAEKRGKMKAVLLSAV ALVMVAQLALGEVNPTLAALAIALLVYFLGFNVLEASQPSLVSKYAPGVRKGAAMGVY NTTQALGLFAGGAGGGWILLHAGQHAVFLTCAALAFAWLIIASPMQMPALRRH" sig_peptide 291522..291626 /locus_tag="Rpic_0276" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.974 at residue 35" gene 292737..293294 /locus_tag="Rpic_0277" /db_xref="GeneID:6287293" CDS 292737..293294 /locus_tag="Rpic_0277" /note="binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA" /codon_start=1 /transl_table=11 /product="single-stranded DNA-binding protein" /protein_id="YP_001897871.1" /db_xref="GI:187927384" /db_xref="InterPro:IPR000424" /db_xref="InterPro:IPR011344" /db_xref="GeneID:6287293" /translation="MASVNKVIIVGNLGADPETRYMPSGDAVTNIRVATTDRYKDKAS GEMKEATEWHRIAFFGRLAEIAGEYLKKGSSVYIEGRLKTRQWEKDGQKQYSTEIVAD QMQMLGGRGGEGGGSSGGGGGGYSRGGEGGGGGYGGGRSQGQSQGQGGGYTRGGEGGG GQGGGARRQPATSNGFEDMDDDIPF" gene 293506..293931 /locus_tag="Rpic_0278" /db_xref="GeneID:6287294" CDS 293506..293931 /locus_tag="Rpic_0278" /note="KEGG: eca:ECA1059 putative integrase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897872.1" /db_xref="GI:187927385" /db_xref="GeneID:6287294" /translation="MAEFIAKRVRFQNGEHHSVLTRPGGLPVHEAALYLARHRKRGLA ANSIHSVCRVLAFLYRELAQANIDLLERIRPGQFLTAPELNRLAEAAQYGVDDSEHAE KEGQRSRKVIDIKRIRMRRGPAAVDVKAVSEARRSATDL" gene complement(294000..296619) /locus_tag="Rpic_0279" /pseudo /db_xref="GeneID:6287295" gene 295113..295919 /locus_tag="Rpic_0280" /db_xref="GeneID:6287440" CDS 295113..295919 /locus_tag="Rpic_0280" /note="PFAM: transposase IS4 family protein; KEGG: bxe:Bxe_C0489 putative transposase IS4" /codon_start=1 /transl_table=11 /product="transposase IS4 family protein" /protein_id="YP_001897873.1" /db_xref="GI:187927386" /db_xref="InterPro:IPR002559" /db_xref="GeneID:6287440" /translation="MEKRRPYPSDVSDEEWSFAAPYLTLMNQDAPQRRYELRELFNAL RWLARAGAAWRMLPTNFPPWEAVYQQTQRWLRGGCFEAMVQDLRSVLRVAQGRQGQPS AVILDGRTLQSTCESGPRAGYDGYKRKRGSKVHMAVDTLGHLLAVHITPANEQERAQV QVLAREVQLVTGQTVKLAFADQGYTGEEPAQAARDEGIELQVIKLPEAKKGFVLLPRR WVVERSFGWLNRFRRLARDYERLPETLAGLHFVVFAMLMLVHAAPVVQSA" gene complement(297160..297495) /locus_tag="Rpic_0281" /db_xref="GeneID:6287441" CDS complement(297160..297495) /locus_tag="Rpic_0281" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897874.1" /db_xref="GI:187927387" /db_xref="GeneID:6287441" /translation="MPKRLHVRPFTVLLMGLALLGGSASAQVVAPTSANTKSAVPAQD SPANPSIEDAPLTALPTHVKSGAPPVHGGFEVERCREVNATTGKCVDAMCVGYTDQGV RSEHFECVP" sig_peptide complement(297160..297240) /locus_tag="Rpic_0281" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.902 at residue 27" gene 298828..299634 /locus_tag="Rpic_0282" /db_xref="GeneID:6287442" CDS 298828..299634 /locus_tag="Rpic_0282" /note="PFAM: transposase IS4 family protein; KEGG: bxe:Bxe_C0489 putative transposase IS4" /codon_start=1 /transl_table=11 /product="transposase IS4 family protein" /protein_id="YP_001897875.1" /db_xref="GI:187927388" /db_xref="InterPro:IPR002559" /db_xref="GeneID:6287442" /translation="MEKRRPYPSDVSDEEWSFAAPYLTLMNQDAPQRRYELRELFNAL RWLARAGAAWRMLPTNFPPWEAVYQQTQRWLRGGCFEAMVQDLRSVLRVAQGRQGQPS AVILDGRTLQSTCESGPRAGYDGYKRKRGSKVHMAVDTLGHLLAVHITPANEQERAQV QVLAREVQLVTGQTVKLAFADQGYTGEEPAQAARDEGIELQVIKLPEAKKGFVLLPRR WVVERSFGWLNRFRRLARDYERLPETLAGLHFVVFAMLMLVHAAPVVQSA" gene 299866..303531 /locus_tag="Rpic_0283" /db_xref="GeneID:6287443" CDS 299866..303531 /locus_tag="Rpic_0283" /note="KEGG: rfr:Rfer_1983 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein" /codon_start=1 /transl_table=11 /product="diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)" /protein_id="YP_001897876.1" /db_xref="GI:187927389" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR003018" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR013655" /db_xref="InterPro:IPR013656" /db_xref="InterPro:IPR013767" /db_xref="GeneID:6287443" /translation="MVKYARLQSLHARIFLVICAAAFPLLIGSGYYLYKQSELVRVAA QVEANQYLTLAAEYAQAEILGAGEALDAISATPSIQSRNWALCNEYLHRLVTQRADRY SNIGVVDLNGNLLCSGVPVSARTLFNFADRTYFQLALKRPGLAVGDYQTGRLTGLPAI SVATAMRDGGGKPFAVVFASLRLTSLERESPNSVDSEARITILDRNGVILLASDPLIG RVGQSLQRSGLREAFMARARDVRISTDATEPFRLIGSMSAGPRDDPSAITVLYTSRGS AVFSGLYRDLRLRALAALALIAIAVSAGWTGTNALIGKNIRRIANAAARMRGRDFHTR VAHEVSGSEFQLIAVQLDEMAKELEQREREWMSSIQRQSHQVDLLRRIAQTEPLEGIL RSICEFAEEQVPGAQASLLLVDEDRCVTSCIAPKLPKSYCDSLIGIRAVSGAGSCGTA IAERRVIVSEDIESDPLWVDFRTLATSHGLRACWSYPVISTGDRVFGSFALYFNEQRA PRPDELPVSRMAAEVAAVAIDRYQTGEALAQSEAEYRSLFETNPYPMWVSESASGKFL AVNDSAIKHYGFSRETFLAMRANDLDAPEQHSQKSEPSTESGGERPTVTSGVKLHRDA RGDTLEVELAYFPLRFQGRNATLALISDVTYRSALTHTIREQKEFFSLLMGSTVEAIC GLDQNGCCTFANAACERLLGYSAQELAGKPMHALIHHTHEDGSPYELAACQIQNSIAS GAHVHVDNEVFWRSDGTSLPVEYWAYPIVRDGQVAGSIVTFIETSERRRQQDELRRRA TFDDLTGLLNRPSFVTALETRLQQADASERHPVVAILDLDGFKEINDSLGHATGDQLL RGVAERLTDQLGPHADVGRLGGDEFAFVVDESYGPPIATRIEAVMESIRRPFSIAGLD LAINGSVGAARYPGAGLDVDTLLRSADVAMYVAKREGHGFTFTDRVDAGTPRPFLLSE LRRALQEDEFILHFQPTIPLQGLPHFGFEALIRWNHPRLGIVGPGEFMPMVEVSDLIH PLTEWVIASAVSRFKTIIESWPNAFVAVNVSMRNLINQKFTSSVQYLVEQNRFPVNCL KIEVTESAVMADPDRTLRALNELHGLGVRIAVDDFGTGYSSLAYLQKLPVDDLKIDRS FVSGLSGSQPSKAIVHSIISLAHSLGLSVTAEGIESEADMRILRAAGCDFGQGYYIGH PMPFDAVHDWLKSRSFV" gene 303721..303884 /locus_tag="Rpic_0284" /pseudo /db_xref="GeneID:6288271" gene complement(304111..306174) /locus_tag="Rpic_0285" /db_xref="GeneID:6288272" CDS complement(304111..306174) /locus_tag="Rpic_0285" /note="PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: reh:H16_B1055 transcriptional regulator, PspF-family" /codon_start=1 /transl_table=11 /product="GAF modulated sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_001897877.1" /db_xref="GI:187927390" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003018" /db_xref="InterPro:IPR003593" /db_xref="GeneID:6288272" /translation="MPGAPSDPAPTNDARVSQVSSAWNLLDTPLSGTSWQRQHAAVIE QSHRRSTTYGLQVTDNPDFSALSKAALSLAIEQNRTLYAYALPVMETLYEQISHHHNI VLLTDAQGVILHAQGDKDFLEKADRVALSLGVTWSERLRGTNGIGTALVEGAPVQVSA NEHYLGVNHVLNCSAVPLFDASGKVTGVLNVSGDPGNFPAHTMALVRMSALQIENQLF AAANPDCITLHLHSRPELIGTLMEGMLSFGLDGRYRAVNRSALFQLGLTPSALAGHTL ESLLGLSVPALFDHYRSATPDPLRVHAANGISLYAKVSIRQRTDCGSLLRPLSADKVG QEAESRAGTASPVRARATSGLGQLDTGDPEIARVISKLKKFNGRDIPTLIIGETGTGK ELLAQAIHEDSPRCAGPFVAVNCASIPETLIESELFGYEEGAFTGARRRGSLGKILQA NGGTLFLDEIGDMPLTLQARLLRVLQERIVTPLGSAKAIPVNVALVCATHRNLRDMIA RGTFRDDLYYRLNGLLVKLPPLRQRRDFEAVLNRLLVGEHGGQRFRVAPEVLRLLKTY DWPGNIRQLVNLVRSAMVMAEGDEIQLDDLPDDFLEDVRHREQPAQEPPAHDMLPVSA DQATLDLLESSLIRQVLKSNGGNVSAAARALGVSRNRIYRKLQSLGAAPTSDLQSPQR DSRPL" gene 306623..306697 /locus_tag="Rpic_0286" /db_xref="GeneID:6288273" CDS 306623..306697 /locus_tag="Rpic_0286" /note="PFAM: coenzyme PQQ biosynthesis protein A; KEGG: mfa:Mfla_0021 coenzyme PQQ biosynthesis protein A" /codon_start=1 /transl_table=11 /product="coenzyme PQQ biosynthesis protein A" /protein_id="YP_001897878.1" /db_xref="GI:187927391" /db_xref="InterPro:IPR011725" /db_xref="GeneID:6288273" /translation="MAWQKPEATDLRFGFEITMYIANR" gene 306893..308152 /locus_tag="Rpic_0287" /db_xref="GeneID:6288274" CDS 306893..308152 /locus_tag="Rpic_0287" /note="KEGG: rsh:Rsph17029_1399 putative glucose/sorbosone dehydrogenase" /codon_start=1 /transl_table=11 /product="putative glucose/sorbosone dehydrogenase" /protein_id="YP_001897879.1" /db_xref="GI:187927392" /db_xref="InterPro:IPR001258" /db_xref="GeneID:6288274" /translation="MTSKLAARLALLCAAVSCSVAAQAQDNMQKLEGFKSTGASLNIE TVPQGGARAAALKANLKQVKLPPGFKIDLYAIVPDARHMAVGPNTGVVFVGTRKTRVW AVSDRTKSRVADEVKVFAPSVSFKIPNGLCFSPDGVLYVAEQNRVLAFPAADFFYESP DVATAPVVPQGELIPVEEESFNHTARTCRIGPDDKLYITLGNPFNVPPKEKVALYDKV GMMGIIRMDRDGKHREVFARGVRNSVGMDFNPKDKTLWFTDNQVDGMGDDIPPGELNR ATKAGENFGFPWYGGGHIRTVEYKSETPPSGVVFPQVEMAAHAADLGMTFYKGKMFPA KYQGGVFSAQHGSWNRTTPVGARIMYTPVKADGTAGKTEVFAEGWLTSNNEYLGRPVD VATLPDGSLLISDDYAGAIYRVSYAAE" sig_peptide 306893..306967 /locus_tag="Rpic_0287" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.937 at residue 25" gene 308139..308462 /locus_tag="Rpic_0288" /db_xref="GeneID:6288798" CDS 308139..308462 /locus_tag="Rpic_0288" /note="PFAM: cytochrome c class I; KEGG: psa:PST_0367 hypothetical protein" /codon_start=1 /transl_table=11 /product="cytochrome c class I" /protein_id="YP_001897880.1" /db_xref="GI:187927393" /db_xref="InterPro:IPR003088" /db_xref="InterPro:IPR008169" /db_xref="InterPro:IPR009056" /db_xref="GeneID:6288798" /translation="MRRSKGLLGLGAALMLAAAPAIAAGSGAPAKATQCFACHGADGL SKAPDAPNLAGQNEQYLVKALQDFRSGARAHEVMSMMAKGLSDQDIQAVSAYFSAIAI SVKAP" sig_peptide 308139..308210 /locus_tag="Rpic_0288" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.979 at residue 24" gene 308553..309488 /locus_tag="Rpic_0289" /db_xref="GeneID:6288799" CDS 308553..309488 /locus_tag="Rpic_0289" /note="possibly involved in transport of pyrroloquinoline quinone transport" /codon_start=1 /transl_table=11 /product="pyrroloquinoline quinone biosynthesis protein PqqB" /protein_id="YP_001897881.1" /db_xref="GI:187927394" /db_xref="InterPro:IPR011842" /db_xref="GeneID:6288799" /translation="MTLMRIIVLGASAGGGFPQWNCNCRNCAGYRAGTVRALARTQSS IAVSTNGLDWLLINASPDILTQIRATPALQPGRATRDTGIAAVLLMDAQVDHVTGLMM LREGGRLRVHCTASVWEDLTERLPLTRVLAHYCGTDWQPITLDTEAGLQRPFEVAGIH HLRITPFPLSSKAPPYSPRRLEPDPGDNIGILLEDTHTGRKTFYAPGLGVIEPHIATA MAGADCVLVDGTFWTEDEMVRSGLSSKLAHEMGHLPLSGDAGMLAFLNTLDARRKIVI HINNSNPILDDDSAERAELTRYGVEVAYDGMEIEL" gene 309485..310198 /locus_tag="Rpic_0290" /db_xref="GeneID:6288800" CDS 309485..310198 /locus_tag="Rpic_0290" /EC_number="1.3.3.11" /note="Required in the synthesis of PPQ, but its exact function is unknown" /codon_start=1 /transl_table=11 /product="pyrroloquinoline quinone biosynthesis protein PqqC" /protein_id="YP_001897882.1" /db_xref="GI:187927395" /db_xref="InterPro:IPR004305" /db_xref="InterPro:IPR011845" /db_xref="GeneID:6288800" /translation="MSRTNASPDAAWPPEEFEVQLRAKGAGYHIHHPFNVRMNNGELT PDQVRGWIANRFYYQVNIPRKDGAIIANCPDRETRRLWVQRILDHDGNADSPGGIEAW VRLGEAAGIPEQDLWSLKHVVPGVRFAVDAYVNFARSVPWQEAVCSSLTEMFAPKIHR DRLANWPQHYPWIEAGGLHYFRSRITLAQRDVEHGLKVTLAHFTTRAQQERALDILQF KLDVLWSMLDAIERAYPTR" gene 310209..310469 /locus_tag="Rpic_0291" /db_xref="GeneID:6288801" CDS 310209..310469 /locus_tag="Rpic_0291" /note="PFAM: coenzyme PQQ synthesis D; KEGG: bxe:Bxe_B2469 pyrroloquinoline quinone synthesis D" /codon_start=1 /transl_table=11 /product="coenzyme PQQ synthesis D" /protein_id="YP_001897883.1" /db_xref="GI:187927396" /db_xref="InterPro:IPR008792" /db_xref="GeneID:6288801" /translation="MTIPKKPRVAKMFRLQWEPAQQAHVLLYPEGMVKLNQSAAEILK RCDGSRDLSTLVSELEQAFGSTGLQQDVEDFLQAAADQGWIQ" gene 310466..311626 /locus_tag="Rpic_0292" /db_xref="GeneID:6287575" CDS 310466..311626 /locus_tag="Rpic_0292" /note="KEGG: pna:Pnap_0729 coenzyme PQQ biosynthesis protein E; TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB" /codon_start=1 /transl_table=11 /product="pyrroloquinoline quinone biosynthesis protein PqqE" /protein_id="YP_001897884.1" /db_xref="GI:187927397" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="InterPro:IPR011843" /db_xref="GeneID:6287575" /translation="MTDVQTLPVDGAAVSPPLWLLAELTHRCPLHCVFCYNPVDFARR RDELSTAQWIDVLRQARQLGAAQLGFSGGEPLLRDDLEELVAEGRQLGFYTNLITSGI GLTEARLARLKAAGLDHIQLSFQDSTREMNDFLSNTRTFDLKSRIALLIKQYDYPMVL NVVLHRHNLDHVERIIEMAVAMGVEYLELANTQYYGWGLINRAQLMPTREQLQRAEAV VNAYRGKLGNRLRILFVVPDYFESRPKACMSGWGAVFLAVTPDGTALPCHAAQTIPGL RFPNVADMPLAEIWNQSEAFNHFRGDAWMQEPCRSCPEKHKDFGGCRCQALALTGDAA QADPVCDKSPHHSRVQEIVLHARHTQQSAVTGEHPLIFRSDANSLRLSSAPK" gene complement(311694..311885) /locus_tag="Rpic_0293" /pseudo /db_xref="GeneID:6287576" gene complement(311890..313386) /locus_tag="Rpic_0294" /db_xref="GeneID:6287577" CDS complement(311890..313386) /locus_tag="Rpic_0294" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pol:Bpro_0544 periplasmic sensor signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="integral membrane sensor signal transduction histidine kinase" /protein_id="YP_001897885.1" /db_xref="GI:187927398" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:6287577" /translation="MSGRGEAVLSRRLSLVFAVLLLVCCGTSAWLQLRSNGRHEQEVI QRLSSGLAAHIAENAELMRPEGLNPVAVKDLFDKLMAVNPSVEVYLLSPDGHIAAQAA PPGHLKRDRVDLAPVRRLLAGATMPVLGDDPRNLQTPKVFSAAPMRVDGRDAGYVYVV LQGEDHDAVAAHVAADNVLRTTLWSMGLVALLGLVAGTVAFWLITRPLRELTAVVRRF ESEGIGSLESQTATLERIARGGGEIATLSQAFVQMTRRIAEQWRELTLQDQQRRELVA NISHDLRTPLTSLHGYLETLRLKAGILDDEERRRYLDIALGQSRKVGRLAQELFELAR LEYGVVKPEKENFALADLVQDVFQKFELAAGARQQQLKPDIAPGLPIVSADLGMIERV LTNLLDNAIHHTPVGGAIEVQLRPTNTGVAVQVSDTGPGIPGELQKGLFVRPVFMSGA RSDGSRSGGLGLMIVQRILQLHGSEIRLVPQPGKGAVFCFQLAGAASG" sig_peptide complement(311890..311985) /locus_tag="Rpic_0294" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.818) with cleavage site probability 0.460 at residue 32" gene complement(313383..314111) /locus_tag="Rpic_0295" /db_xref="GeneID:6287578" CDS complement(313383..314111) /locus_tag="Rpic_0295" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_0543 two component transcriptional regulator, winged helix family" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_001897886.1" /db_xref="GI:187927399" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:6287578" /translation="MDSAKRVLLVEDDAHIAELLRMHLRDEGYAVVHAADGHAGQREM ERGNWDALVLDLMLPGIDGLEICRRARVQARYTPIIIISARSTEVHRILGLELGADDY LAKPFSVLELVARVKALIRRTDALARNARMESGSLTLGNLEIEPLAREVRVDGKPIEL TPREFDLLHFFARHPGKVFSRLDLLNQVWGYQHDGYEHTVNTHINRLRAKVEVDPAQP RRILTVWGRGYKLSIGADGKEDAA" gene 314244..314918 /locus_tag="Rpic_0296" /db_xref="GeneID:6286149" CDS 314244..314918 /locus_tag="Rpic_0296" /note="KEGG: dac:Daci_3135 thiosulfate reductase cytochrome b subunit (membrane anchoring protein)" /codon_start=1 /transl_table=11 /product="thiosulfate reductase cytochrome b subunit (membrane anchoring protein)" /protein_id="YP_001897887.1" /db_xref="GI:187927400" /db_xref="InterPro:IPR000516" /db_xref="GeneID:6286149" /translation="MKRDAHLSMPTSIDTSPVHPLWMRCTHWFNALAVMVLVLSGWRI YNAAPFFPFTIPASATLGGWLGGALQWHFAAMWLLVVNGLVYLVMNVASGRLARKFFP VTPAGVRCDMVAALKGRLSHADPRHYNNVQRLAYLLVILDIVLLVLSGLVLWKSVQFA TLRELLGGYEVARRIHFCAMAGAVAFVVVHLVMVALVPRTLLTMLGGRVAGTPSPIQD RSSHDA" gene 314927..315718 /locus_tag="Rpic_0297" /db_xref="GeneID:6286150" CDS 314927..315718 /locus_tag="Rpic_0297" /note="PFAM: oxidoreductase molybdopterin binding; KEGG: dac:Daci_3134 oxidoreductase molybdopterin binding" /codon_start=1 /transl_table=11 /product="oxidoreductase molybdopterin binding" /protein_id="YP_001897888.1" /db_xref="GI:187927401" /db_xref="InterPro:IPR000572" /db_xref="GeneID:6286150" /translation="MKIFKAPRFDGIDGDAVLIEARRQIARHVNLPARRAFLQRSLTL GGLSLLTGCSISDNEQVEAALSRISRFNDKVQGLIFDPNQLAPTYPDSMITRPFPFNA YYGEDEVRQVDEQAWRLEVTGLVSDRRQWNLADLRAMQQYDQVTRHICVEGWSAIGKW GGVRFGDFLRRVGADLSAKYVGFKCADDYHTSIDMATALHPQTLMAITYDGAPLPPKY GFPMKLRMPTKLGYKNPKHIQAIFVTNTYPGGYWEDQGYNWFGGS" gene 315839..316168 /locus_tag="Rpic_0298" /db_xref="GeneID:6286151" CDS 315839..316168 /locus_tag="Rpic_0298" /note="TIGRFAM: pentapeptide MXKDX repeat protein; KEGG: dac:Daci_3133 pentapeptide MXKDX repeat protein" /codon_start=1 /transl_table=11 /product="pentapeptide MXKDX repeat protein" /protein_id="YP_001897889.1" /db_xref="GI:187927402" /db_xref="InterPro:IPR014299" /db_xref="GeneID:6286151" /translation="MNKFATTLLAVSLTFGGASAVFAADAMGKDAMSKDAMSKDAMSK DAMSKDAMSKDAMSKDAMSKDAMSKDAMSKDAMSKDAMKKDSMKKDAMKKDAMKKDAM KKDAMSQ" sig_peptide 315839..315910 /locus_tag="Rpic_0298" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 24" gene 316214..317614 /locus_tag="Rpic_0299" /db_xref="GeneID:6286152" CDS 316214..317614 /locus_tag="Rpic_0299" /note="PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; cytochrome c biogenesis protein transmembrane region; Redoxin domain protein; KEGG: pol:Bpro_0539 cytochrome c biogenesis protein, transmembrane region" /codon_start=1 /transl_table=11 /product="cytochrome c biogenesis protein transmembrane region" /protein_id="YP_001897890.1" /db_xref="GI:187927403" /db_xref="InterPro:IPR000866" /db_xref="InterPro:IPR003834" /db_xref="InterPro:IPR011594" /db_xref="InterPro:IPR013740" /db_xref="GeneID:6286152" /translation="MTLFIISFLGGALTVLAPCILPVIPFVFARVDQPFVKSGLPMLV GMASTFAAVGTLGAAAGSWAVEANEYGRIAATALLGLMGAAMVFPRLAERLTRPLVSV GLDLSNAANAHTAMAGNCVLPSFIRGVATGLLWAPCAGPILGLILTGAVLQGPNVKTS LLLLAYGAGAVSSLALVLLAGHRIFAAMKRSLGIGEWFRKGLGITVLSGAVVVMTGVD TGWLAQVSSGSVEASVEKMLLQHFAPRQTGKMPIVDGQQQAKRNAPGGRLILVQAQQN RQPLNLPVEGLFPPLTGAVDWLNSPPLTVEALRGKVVLVNFWTFGCINCRNVLPYVRE WDRKYKDQGLVVVSVHAPEFAYEKNIENVKRAASELGATFPIAIDNRFEIWKAFNNNY WPANYFIDSQGRIRFHHFGEGEYEKSERVIQQLLKEARVGDRPVPMTETTLETLNAAL ALQRAGDFVAAGVGAG" sig_peptide 316214..316303 /locus_tag="Rpic_0299" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.938) with cleavage site probability 0.925 at residue 30" gene complement(318020..318280) /locus_tag="Rpic_0300" /db_xref="GeneID:6287732" CDS complement(318020..318280) /locus_tag="Rpic_0300" /note="KEGG: rso:RSc0424 probable signal peptide protein" /codon_start=1 /transl_table=11 /product="putative signal peptide protein" /protein_id="YP_001897891.1" /db_xref="GI:187927404" /db_xref="GeneID:6287732" /translation="MNGRLLLIPALLVALLSPLAHADLSETKENIKQDTKEAARKTGH AAKEAGHATANAARAVGHGVKNAAHATKCGVKHVFKKPCESD" sig_peptide complement(318020..318088) /locus_tag="Rpic_0300" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 23" gene complement(318305..318766) /locus_tag="Rpic_0301" /db_xref="GeneID:6287733" CDS complement(318305..318766) /locus_tag="Rpic_0301" /note="KEGG: rso:RSc0425 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897892.1" /db_xref="GI:187927405" /db_xref="GeneID:6287733" /translation="MTSNAQPTPPLDRNWIAARIPHSGTMCLLDTVVAWDDAHIRCNA TSHRDTANPLRSHGQLAAVCGIEYAAQAMAVHGALCDAAQARPRAGFLASVRSIEAHV PRLDTIETPLDVEAERIGGDGINVLYRFTVRSGARILLTGRAAVVLDASVA" gene complement(318763..319566) /locus_tag="Rpic_0302" /db_xref="GeneID:6287734" CDS complement(318763..319566) /locus_tag="Rpic_0302" /note="KEGG: bur:Bcep18194_A6097 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897893.1" /db_xref="GI:187927406" /db_xref="GeneID:6287734" /translation="MTRLSAFIESAGILGPGLPDWPHTADVLAGRARYAHAPTELPPP AGLPSVERRRTGPVVKLALAVGHEAVAASGRDAATLATVFSSSGGDGHNCNAICETLA GDDRKLSPTRFHNSVHNAPAGYWSIATHAMAPSNVLCAYDGSFAAGLLDGLCQVAIDA TPALVIAYDGDYPEPLNAVRPVPDPFAVALVLAPEAGPRTLARIDVALTDAPLTALAQ PGLETLWHGNAAARALPLLEALAARRAGRVVLEYLHETRVQVDITFGTP" gene complement(319563..320780) /locus_tag="Rpic_0303" /db_xref="GeneID:6287735" CDS complement(319563..320780) /locus_tag="Rpic_0303" /note="FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP" /codon_start=1 /transl_table=11 /product="3-oxoacyl-(acyl carrier protein) synthase I" /protein_id="YP_001897894.1" /db_xref="GI:187927407" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR014030" /db_xref="InterPro:IPR014031" /db_xref="GeneID:6287735" /translation="MKPVLLTHFTATSCLGRGLDATLDALRGQRGGLAPCTFPRADLD TWIGEVPGADAAPVRADLADFDCRNNRLAQIGLTQDGFAESVEAAKARHGAGRVGVFI GTSTSGILETERAYQQRDPQTGALPASFHYAQTHNIYSPAAFVRAYFGLSGPATAISS ACSSGAKVFASARRMLAAGLIDAAVVGGVDSLCLTALYGFNSLELLSRQPCRPYDVAR DGISIGEAAAFALLERAPEANDALDDDAILLLGIGESSDAHHMSSPHPEGLGARAAMA QALATSGLSTADIDYINLHGTGTPSNDAAESRAIQALFHGTACSSTKGATGHTLGAAG ALEAVITALALRHQFLPAGINTTQPDPALIANYLTESGHARVRTALSNAFGFGGTNCS LVFGRADHLGLSS" gene complement(320855..321718) /locus_tag="Rpic_0304" /db_xref="GeneID:6289719" CDS complement(320855..321718) /locus_tag="Rpic_0304" /note="PFAM: polysaccharide deacetylase; KEGG: bur:Bcep18194_A6095 polysaccharide deacetylase" /codon_start=1 /transl_table=11 /product="polysaccharide deacetylase" /protein_id="YP_001897895.1" /db_xref="GI:187927408" /db_xref="InterPro:IPR002509" /db_xref="GeneID:6289719" /translation="MNAPITPPLGTARRWKPSPLISGALALHAGAAVAVAADPSTWPW AGGGVIASHLVLMAGGLWPRSTWLGPNWTHLPATAGQRIAMTIDDGPDPDVTPRVLDI LDQYGAKATFFCIGELAQRHPRCVEAIVARGHAVENHSQRHRHTFSLKGPGALRREIA AAQDTLTQITGTRPLFFRAPAGLRNPFLEPVLCQLGLQLASWTRRGFDTRSRNPEAVT QRLLHGLAPQDILLLHDGHAARDAHGDPVLLTVLPKVLETAARAQLQCTTLRAALAPE PAQATRSQMTI" sig_peptide complement(320855..320965) /locus_tag="Rpic_0304" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.626 at residue 37" gene complement(321715..324147) /locus_tag="Rpic_0305" /db_xref="GeneID:6289720" CDS complement(321715..324147) /locus_tag="Rpic_0305" /note="PFAM: MMPL domain protein; KEGG: bch:Bcen2424_2764 exporter-like protein" /codon_start=1 /transl_table=11 /product="MMPL domain protein" /protein_id="YP_001897896.1" /db_xref="GI:187927409" /db_xref="InterPro:IPR004869" /db_xref="GeneID:6289720" /translation="MKRLHALRRPAVLVWLTGLLLCAVVIGRTSFTADLSAFLPRSPS AEQRVLVDQLREGLVSRLILVGIDGGDAATRATLSKQLAARLRADAQFSAVNNGEPVS EARDRQFIFDHRYVLSPAVTPQRFSAEGLHAALGESLDLLSSSAGLVAKNMLPRDPTG EVAALVSQLDNTALPSSKHGVWASRDGQRAVLVVQTTAAGSDTDAQAHAIDAVRGAFD AVARAVPNAASTRILMTGPGVFSVESRDTIKHDVERLSAVSLVLVVALLLTVYRSPRT MVLGLLPVLSGVAAGVAAVSLTFGAVHGLTLGFGTTLIGEAVDYSIYLFVQSARLHGA TPHDSLRAWIATYWPTIRLGVLTSVCGFASMLFSGFPGLVQLGLYSIVGLVTAALVTR YVLPHLRGAEVATRDLSRVGAWLTRATSAAPRLRWLLAAVLIGACAALSLHRDSLWSR ELAALSPVPAKSQALDASLRADVGAPDVRYLVVIPAATEQAALEGAEKIATQLQPLVD NGVLAGFENPARYLPSDATQRARLASLPAADALATRMRSAVEDQPIRVKPDLFAPFIA DVDAARAQPFLRRADLKGTSMALAVDALLTEHAGQWNAMLPLRAPPDAPSAAPATTNN ASNPPSLDAAPIRAAVEHATVPGALFVDMKVEADRMYVNYVREDLRLSLAGFAAIALL LIVALRSPQRTLRALAPLVAAVLVVTAGFALARVPLTILHLVGMLLIVAVGSNYALFF NQRAQAIAPQTLVSLLVANLATVAGFGLLALSRVPMLETFGLTVGPGAMLALLFAAIL APRANHDQHATA" sig_peptide complement(321715..321813) /locus_tag="Rpic_0305" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.972 at residue 33" gene complement(324161..324757) /locus_tag="Rpic_0306" /db_xref="GeneID:6289721" CDS complement(324161..324757) /locus_tag="Rpic_0306" /note="KEGG: bam:Bamb_2815 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897897.1" /db_xref="GI:187927410" /db_xref="GeneID:6289721" /translation="MTATRPFFRAFLALLAASMLAATAHAADSAWTLDRLMSTLARNK SGRATFTETKTLSIAAQPIESSGELVFVAPDHLEKHTLAPKPEHLVIDGDKLTVERNQ RKFTMPLSQYPELGAFIESIRATLAGNRYALEAIYKVAIAGHGDDWTLTLSPIDTRMQ QVVRTITLEGTRDVLRSVAIRQADGDHSLMRLQRVLGN" sig_peptide complement(324161..324241) /locus_tag="Rpic_0306" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.993 at residue 27" gene complement(324754..325716) /locus_tag="Rpic_0307" /db_xref="GeneID:6289722" CDS complement(324754..325716) /locus_tag="Rpic_0307" /note="KEGG: rso:RSc0431 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897898.1" /db_xref="GI:187927411" /db_xref="GeneID:6289722" /translation="MKRSDWAERPERSNLALLRLMTWLSLRLGRPFGRVLLRLIALYF VAASPAARGASRDYLRRALGRTATLCDVFRHMLTFATTIHDRIYLISGRFGLFDIQLQ GQQHVHNVLAQGRGAFLLGAHLGSFEVVRALGRTVPDLRVAVAMYEENARNINAAVAA INPAAAPEVIPLGRVDAMLQVREALDDNRLVGMLADRTLLRDAGPSVRHMDFLGSPAA FPLGPLHMAAMLKRPVLFMTGLHLGGNRYAVHFDLLADFTDVRREDRAAAVQAALGRY VERVEHYCRTAPYNWFNYFDFWQDADAAGAPDHAPADHQTTQTP" gene complement(325713..327410) /locus_tag="Rpic_0308" /db_xref="GeneID:6287836" CDS complement(325713..327410) /locus_tag="Rpic_0308" /note="PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: rso:RSc0432 hypothetical protein" /codon_start=1 /transl_table=11 /product="Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ" /protein_id="YP_001897899.1" /db_xref="GI:187927412" /db_xref="InterPro:IPR013114" /db_xref="GeneID:6287836" /translation="MPTYPLVSHPTLDNTLAWRDGTPVSARTFLADVMALAAMLPPGG HVFNACADRYRFAVGLGAALVAGKVSLLPPMQTAQMVRQLSAFAPDVFCLHDATACPV DLPAFRYPDALTPGAAPIDVPQIDTSQVMAVLFTSGSTGTPVPHRKTWGALARCMRTA VAHLGLADGRAFTLVGTVPAQHMYGLEVTVLLALQGGLAFSNRQPFYPADIREALDAV PQPRVLVTSPVHLRALLASEPALPSASLVLSATAPLSEALARKTETRLSTPLLEIYGS TETGQVATRRTAQETAWHLYPGVRMESRSGTPEDEGPTVWVYGGHVETPVPMGDAIEL IDDTHFLLHGRKADLINIAGKRSSLAYLNHQLNAIAGVVDGVFYMPDDAPAARHTHGS AAVTRLVALVVAPGLSAADVLRALHDRIDAAFMPRPLLLVDALPRNETGKLARDVLAA LIAQHSHRNAHKHGMRFTIPADHPALPGHFPGHPIVPGVVLLDHALHTIGAALGRSLD ACKISSAKFLSPAAPGEVLDLAFETTPSNAVRFTIRAGEREVASGVLSAPAPEGVAA" gene complement(327437..328111) /locus_tag="Rpic_0309" /db_xref="GeneID:6287837" CDS complement(327437..328111) /locus_tag="Rpic_0309" /note="KEGG: rso:RSc0433 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001897900.1" /db_xref="GI:187927413" /db_xref="GeneID:6287837" /translation="MHRLTSFARGAAGVGAIVAYQVGAHYAAATPGAHGVGLAMALLP PLAIALVAATRTTHRAWLLPLWLLVCSVLWMARAPLAAHFDWGLYLEHASFNLMMAYV FGRTLVAGREPLCTRFAHMVHGTLTPRIARYSRQVTLVWTLFFLATAAVSTLLFATAS TVTWSTFANYLSLPLVGVVFVAEYLCRRIVLRGEPHSSLFDAVRAYRQSEQSGHVTPA ATERSR" sig_peptide complement(327437..327526) /locus_tag="Rpic_0309" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.807) with cleavage site probability 0.667 at residue 30" gene 328523..328783 /locus_tag="Rpic_0310" /db_xref="GeneID:6287838" CDS 328523..328783 /locus_tag="Rpic_0310" /note="Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides" /codon_start=1 /transl_table=11 /product="acyl carrier protein" /protein_id="YP_001897901.1" /db_xref="GI:187927414" /db_xref="InterPro:IPR006163" /db_xref="GeneID:6287838" /translation="MNDLEKELAALMIGELNLEDIQLDALTADTPLYGEGFGLDSIDI LEVALLISKKYGFELRSGDPDNQKIFASLGSLAAYVAEHRTR" gene 328838..329608 /locus_tag="Rpic_0311" /db_xref="GeneID:6287839" CDS 328838..329608 /locus_tag="Rpic_0311" /note="PFAM: glycosyl transferase family 2; KEGG: rso:RSc0436 hypothetical protein" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_001897902.1" /db_xref="GI:187927415" /db_xref="InterPro:IPR001173" /db_xref="GeneID:6287839" /translation="MPMTGASTSHLVLIPSYNPGHKVDDTVRSARAQWNPVWVVVDGS TDGSTERLQAMAAQDPGLRVIVLPRNRGKGVAVLAGLEAAAAAGFTYVLTMDADGQHP ANLIPEFMAASQAAPDAMILGQPVFDATAPQMRVQGRRLSNGCADIETLWAGIGDTLF GFRVYPIAPLAEIMRQQSWMRGFDFDPEAAVRLCWAGVRPIRLAAPVRYFRPNEGGVS HFRYLRDNILLIAMHLRLAAEGLLRLPSMIARRLQRGW" gene complement(329625..330137) /locus_tag="Rpic_0312" /pseudo /db_xref="GeneID:6287380" gene complement(330182..330595) /locus_tag="Rpic_0313" /db_xref="GeneID:6287381" CDS complement(330182..330595) /locus_tag="Rpic_0313" /note="PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: rso:RSc0437 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF395 YeeE/YedE" /protein_id="YP_001897903.1" /db_xref="GI:187927416" /db_xref="InterPro:IPR007272" /db_xref="GeneID:6287381" /translation="MAIVIALVAGLLFGAGLIVSGMANPAKVLGFLDLFGQWDPSLAF VMAGAIAVGVIAFFVARRRGRSWLGTPIQLPSATGVTARLVLGSAVFGIGWGLAGFCP GPALVALGAGVPKAVGFVAAMLAGMAVFSWLQRKR" sig_peptide complement(330182..330253) /locus_tag="Rpic_0313" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.949 at residue 24" gene complement(330597..331031) /locus_tag="Rpic_0314" /db_xref="GeneID:6287382" CDS complement(330597..331031) /locus_tag="Rpic_0314" /note="PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: rso:RSc0438 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF395 YeeE/YedE" /protein_id="YP_001897904.1" /db_xref="GI:187927417" /db_xref="InterPro:IPR007272" /db_xref="GeneID:6287382" /translation="MSIDFTHFTPGAALVGGLIIGLAAAVLVLGTGRIAGISGIVGGL LLRPRGDMDWRIAFLIGLMGAPVVAALLGHPVVPEIAAGWGEVLAAGFLVGIGTRYAG GCTSGHGVCGLSRGSVRSLVATLSFVTAGIVTVFVVRHVFGG" sig_peptide complement(330597..330674) /locus_tag="Rpic_0314" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.787) with cleavage site probability 0.556 at residue 26" gene 331364..332335 /locus_tag="Rpic_0315" /db_xref="GeneID:6287383" CDS 331364..332335 /locus_tag="Rpic_0315" /note="PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: rso:RSc0439 putative lipase/esterase protein" /codon_start=1 /transl_table=11 /product="Alpha/beta hydrolase fold-3 domain protein" /protein_id="YP_001897905.1" /db_xref="GI:187927418" /db_xref="InterPro:IPR002168" /db_xref="InterPro:IPR013094" /db_xref="GeneID:6287383" /translation="MSWQNWVVSRMVRNQIKKPTEREPFDPIATRLHAEKRKMPSPVE LPPDWRIVPADGVNGDGLTGEWIEPADPDLHDDAPVVLYLHGGGYFFCSPRTHRPITI GLATHARARVCVPDYRLAPEHPFPAPVEDALFTYRTLVTQGVSPSRIVVAGDSAGGGL ALALLVALRDAADPLPAGAVLYSPWTDLAATGQSLIDNDESDVMFRGAWMAHGAALYL GDSGAPADHPLASPLYADFTGLPTLHCYVSTSEVLRDDTLRMAERARAAGVSVSVEMG RRLPHVWPIFYPFLPEARVALKRSGEQIRRLVAAQHKNREPVELTPA" gene 332393..333187 /locus_tag="Rpic_0316" /db_xref="GeneID:6288735" CDS 332393..333187 /locus_tag="Rpic_0316" /note="KEGG: rso:RSc0440 putative signal peptide protein" /codon_start=1 /transl_table=11 /product="putative signal peptide protein" /protein_id="YP_001897906.1" /db_xref="GI:187927419" /db_xref="GeneID:6288735" /translation="MRRVVVLGVVLAVVAGAWHWSRLHRLRLADVRFAPIENVAAATG SAGAPVLNANKSHWLKACDQALGPMRVEVRATETPLSFSNDRSVDQLTAEAPPYDRSA RVLGKTYATLVARFDVNSRYMAIATQPPTTCLRPSISVELVLNNFRVTVAREFAPGTC AYNAIREHELRHVAVNRAVLPHAAEVIRKEIESEYGGRLYFGDPDRIAADLQAALTRH WLPRAQSLIELGLQAHEQIDTARERERMSRVCNGEVQAVLQQLTRS" gene complement(333207..333716) /locus_tag="Rpic_0317" /db_xref="GeneID:6288736" CDS complement(333207..333716) /locus_tag="Rpic_0317" /EC_number="2.7.1.12" /note="KEGG: rso:RSc0441 probable thermoresistant gluconokinase (gluconate kinase 2) protein; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase" /codon_start=1 /transl_table=11 /product="carbohydrate kinase, thermoresistant glucokinase family" /protein_id="YP_001897907.1" /db_xref="GI:187927420" /db_xref="InterPro:IPR000623" /db_xref="InterPro:IPR006001" /db_xref="GeneID:6288736" /translation="MIVVVMGVSGCGKSTVGQKIAERLGCAFRDGDEFHSEANRAKMH AGIPLNDDDRKPWLESIRAYMDEKTSSGQSLVVACSALKQRYRDVLRGAAGNAEFVYL KGDFDLLQGRLAARKDHFFNPSLLRSQFDALEEPTDAVIVDIALPPEAIVDEAVAQLQ ARAAHRPAA" gene 333949..335664 /locus_tag="Rpic_0318" /db_xref="GeneID:6288737" CDS 333949..335664 /locus_tag="Rpic_0318" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: rso:RSc0442 acyl-CoA synthetase" /codon_start=1 /transl_table=11 /product="AMP-binding domain protein" /protein_id="YP_001897908.1" /db_xref="GI:187927421" /db_xref="InterPro:IPR000873" /db_xref="GeneID:6288737" /translation="MAGEVFDARPRNGASYVVGDTSVPLAHVTVSALLADTVRRCPDD EAVVFREQNVRWTWRTFAEQVDALAAGLHALGFERGDRIGIWSPNRVEWVLTQFATAR LGLILVNINPAYRLSELEYALNKVGCKAIVAAEAFKTSRYLEMLQTLAPELATAQPGA LNAAKLPALRWVIRMGEAGTPGMLNFADVVARGKSVPVDALDAITATLSPDDAINIQF TSGTTGAPKGATLTHVNVVNNARFVAMAMNLQEGDRLCIPVPLYHCFGMVMSVLTCTA TGACMVFPGEAFDPLATLRTVAEERCTQLHGVPTMFIAQLDHPDFKSFDVSTLRGGIM AGSPCPIEVMKRVVSELNLREVTIAYGMTETSPVSFQSAVTDPLDKRVTTVGRIQPHL QVKLVDGAGEVVPVGEKGELCTKGYSVMLGYWDDEAKTAESIHDGWMRTGDLATFDAE GYCNIVGRVKDMLIRGGENVYPREIEEFLFRHPKVQAVNVFGVPDPKYGEEVCAWIVL KPGQQATEEEIRTFCQGQIAHYKIPRYIRFVTEMPMTVTGKVQKFVMRDRMVEELKLT VAATA" gene 336366..337640 /locus_tag="Rpic_0319" /db_xref="GeneID:6288738" CDS 336366..337640 /locus_tag="Rpic_0319" /note="KEGG: rso:RSc0443 probable glycin-rich signal peptide protein" /codon_start=1 /transl_table=11 /product="putative glycin-rich signal peptide protein" /protein_id="YP_001897909.1" /db_xref="GI:187927422" /db_xref="GeneID:6288738" /translation="MKKTLLATAIAMGLGVSGVALADIGNTASGAGDKTQTTTSTINR TSTDTDTTTTTTATDNSNQHNNSSQGSNRDNSGTASATGYGTAASNNGGVSTATFTNS FNTSKAIAISKLEGTVTNLSISGIGNVATNNGGSANGGAGGRGGYGYGGAGAGGNGGA GGAGGGGGAGGSSGSVTHGSATNGGATAGNGGNGGGAAGNAGSGGSGGSSGTLSASLG AGLGGLAGSASAAGGGAGGSGGGAGGSNGGDANHHHGSGSATGGAAAAAGGNGAAGGT GTSGSSTASGGAGTGTSTATGTSTGGAGAAGGAATNVAGTGGAGGTSTNGSATNGAAS STAGNGAVGAVGAAGGAGGVGNGGVGNGAVGGTGGAGGTVMVDAGTFNMSNAMTSVGQ SAAGVMVASQNSGFASLIQQSINVQANLNVGK" sig_peptide 336366..336434 /locus_tag="Rpic_0319" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 23" gene 337765..338199 /locus_tag="Rpic_0320" /db_xref="GeneID:6287756" CDS 337765..338199 /locus_tag="Rpic_0320" /note="KEGG: rso:RSc0444 hypothetical signal peptide protein" /codon_start=1 /transl_table=11 /product="conserved hypothetical signal peptide protein" /protein_id="YP_001897910.1" /db_xref="GI:187927423" /db_xref="GeneID:6287756" /translation="MRSDRRTTAGWAAWWLACGLVAWPAAAATAANDAPIADGAQVAS TEAVRPPAAAAMSVPGLGHAVGADRLDSYRGGTQDLYQTVNEARLSGTVSDNAAINVA TGSNIVRDGSFANASGIPTVIQNSGANVLIQNATIVNVQFRP" sig_peptide 337765..337848 /locus_tag="Rpic_0320" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.658 at residue 28" gene 338216..338899 /locus_tag="Rpic_0321" /db_xref="GeneID:6287757" CDS 338216..338899 /locus_tag="Rpic_0321" /note="PFAM: peptidase C39 bacteriocin processing; KEGG: rso:RSc0445 hypothetical signal peptide protein" /codon_start=1 /transl_table=11 /product="peptidase C39 bacteriocin processing" /protein_id="YP_001897911.1" /db_xref="GI:187927424" /db_xref="InterPro:IPR005074" /db_xref="GeneID:6287757" /translation="MMRKTFGAVLVALICGPALAGTIDMLGTGGGTYAMPVTSMKAAR YLRTVHQRFDFSCGSAAVATLLTYQYGYPVSEQTVFQAMYEHGNQEKIRREGFSLLDI KRYLASLGFEADGFEQPLDALKGAHLPAIVLLTENGYHHFVVVKGVQEGRVLVGDPAM GTRAIPRASFESMWDNHLLFVVHNREAGATFNASSDWRVAPRAPLEEGMDRSGLGNIV VPKHGPSDF" sig_peptide 338216..338278 /locus_tag="Rpic_0321" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 21" gene 338945..339481 /locus_tag="Rpic_0322" /db_xref="GeneID:6287758" CDS 338945..339481 /locus_tag="Rpic_0322" /note="KEGG: rso:RSc0446 probable lipoprotein" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="YP_001897912.1" /db_xref="GI:187927425" /db_xref="GeneID:6287758" /translation="MKRFGKVAWAAGWFALAAAGHACAAGMGGMDNNPVHAWQAVSED KLDDMRGGFDVPSLAGLRISFGIDRAVFINGDLVASASVNIPDVARMTTTQAQQLASV VNTVNIVQNGPNNVAPPDVATGGAAAATVIQNSLNNQTLQAVTTINAAVNSLPQFRQM NLSNVLQGALANVVTMLH" sig_peptide 338945..339019 /locus_tag="Rpic_0322" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.853 at residue 25" gene complement(339483..340793) /locus_tag="Rpic_0323" /db_xref="GeneID:6287759" CDS complement(339483..340793) /locus_tag="Rpic_0323" /note="KEGG: rso:RSc0447 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897913.1" /db_xref="GI:187927426" /db_xref="GeneID:6287759" /translation="MKNAPWGPLRAVACACLLLCGRSALAQTNEPVDDKPPSLEALQR ELVDTQARLQELKRSIQQQEAHLRHMRRALGMSEGRLDTVRGAGAPGAAGDAVELAQN DQPGTTPVGKPPEPPDRPPRIAQIFDEPSALTPPGKVVVEPSFQMAYSSSDRVALVGY TIIPALLIGLIDVRQVKTTTLTGTVAMRYGLARRWELEARVPYVYSKSDTVSRELFTG TATDNAFSSHGHGIGDVELTARYQINAGGVDKPFYIGWLRFKTRTGKDPFEVTTDCVT RCVSNTTGTGLPLQQPTGSGFFAVQPGLTWLFPTDPAVFFGSISYLHNFERKDVSLNL VDGSKQFLGNVKAGDIIGLNFGMGLALNEKASFSIGYDQSIIGPTTQNGQRVPGSVRT ILGTLLVGYSYRLSPKMALNLSVGAGLTRDTPDLTVTLRLPIQF" sig_peptide complement(339483..339563) /locus_tag="Rpic_0323" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 27" gene complement(341017..341853) /gene="queF" /locus_tag="Rpic_0324" /db_xref="GeneID:6287892" CDS complement(341017..341853) /gene="queF" /locus_tag="Rpic_0324" /note="catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis" /codon_start=1 /transl_table=11 /product="7-cyano-7-deazaguanine reductase" /protein_id="YP_001897914.1" /db_xref="GI:187927427" /db_xref="InterPro:IPR001474" /db_xref="GeneID:6287892" /translation="MSNQPEHSPLGKTSAYKTEYDPHLLFPIPRQGKRDEIGLAAGTP LPFFGVDLWNLYELSWLNLRGKPQVALGTVIVPADSPNIVESKSFKLYLNSFNQTKVA SHEALQQLIHHDLSEACGAPVQVRIVTQEEFARQKMGELDGLLLDRLDIETDVYQPTP ELLHADEEESPVEETLVSHLLKSNCLVTGQPDWGSVQIRYVGAPINQEALLKYLISFR EHNEFHEQCVERIFTDILRQCRPVKLAVYARYTRRGGLDINPFRTNYNTPWPDNLRNA RQ" gene complement(341853..343373) /locus_tag="Rpic_0325" /db_xref="GeneID:6287893" CDS complement(341853..343373) /locus_tag="Rpic_0325" /note="threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway" /codon_start=1 /transl_table=11 /product="threonine dehydratase" /protein_id="YP_001897915.1" /db_xref="GI:187927428" /db_xref="InterPro:IPR000634" /db_xref="InterPro:IPR001721" /db_xref="InterPro:IPR001926" /db_xref="InterPro:IPR005787" /db_xref="GeneID:6287893" /translation="MAIDYLKKILTAKVYDVAVETELKFAPNLSVRTGNRVYLKREDD QPVFSFKLRGAYNKMASLTPAERKRGVITASAGNHAQGVAFSAARMECKAVICMPVTT PQLKIDGVRSRGGDWVDVVLHGESYSDAYNHAAKLQEKHGYTFVHPFDDPEVIAGQGT IAMEILRQHPQPIHAIFCSIGGGGLISGIAAYVKAVRPDVKVIGVQSVDSDAMARSVA AGKRVELKEVGLFADGTAVKLVGKETFRLTRELVDEIITVDTDAICAALKDVFQDTRS LLEPSGALALAGLKQYAETHKLKNESLVAVASGANMNFDRLRFVAERAEVGEAREAVF AVTIPEERGSFKRFCELVGWSRNVTEFNYRIASKDAAHIFVGVQIASRAEGDKIAENF RKHGFPTLDLSNDELAKQHIRYMVGGRSPLAENEHLYRFEFPERPGALMKFLSSMSPN WNISLFHYRNQGADSSNILVGIQVPKNEKREFKAFLATLGYTYWDESENPVYSLFL" gene 343516..344433 /locus_tag="Rpic_0326" /db_xref="GeneID:6287894" CDS 343516..344433 /locus_tag="Rpic_0326" /note="PFAM: Ion transport 2 domain protein ; K channel inward rectifier conserved region 2 domain protein; KEGG: rso:RSc0450 putative ATP-sensitive inward rectifier potassium channel related transmembrane protein" /codon_start=1 /transl_table=11 /product="K channel inward rectifier conserved region 2 domain protein" /protein_id="YP_001897916.1" /db_xref="GI:187927429" /db_xref="InterPro:IPR013099" /db_xref="InterPro:IPR013518" /db_xref="InterPro:IPR013521" /db_xref="GeneID:6287894" /translation="MNTPSSSSGRAGRARRGRKVWSGTQHVIAYGMPPLGWRDLYHHA LEVNWPTFFALLATLFLALNAVFAGLYSLGDGAIANQSPPGFVGAFFFSVETLATVGY GDMHPQTLYAHVIATLEIFIGMSGIAMATGLVFARFSRPRAKIMFARNVVVRPLNGKS TLMLRAANARQNVIAEATARLRLMQDEVSPEGYAIYKIHDLKLERSEHPIFLLGWVMM HVIDEASPLHGATAESLAAGDALLLLTIEGADETAAQTVQARYSWRHDEIRWNHRYAD LIRDESGVTSVDYDNFHLIHPIETPPQAQ" gene 344465..345712 /locus_tag="Rpic_0327" /db_xref="GeneID:6287895" CDS 344465..345712 /locus_tag="Rpic_0327" /note="PFAM: nucleoside recognition domain protein; KEGG: rso:RSc0452 putative transmembrane protein" /codon_start=1 /transl_table=11 /product="nucleoside recognition domain protein" /protein_id="YP_001897917.1" /db_xref="GI:187927430" /db_xref="InterPro:IPR011642" /db_xref="GeneID:6287895" /translation="MALNLVWLAFFLVAFVTACVQVVQGDMEVFSRMLTGMFDAARTG FEIAIGLTGMMALWLGIMRVGERAGVVDLFARLVNPLMRHLFPSVPAGHPANGAMMMN VSANVLGLDNAATPLGLQAMRELQQINPQPQRASDAQLMFVVLNTAGVTLVPTSVIAI RQAMAVKQGLVGFNAADIFLPTLLSTFIGFCAGIAAVAWYQRINLFKPALLAYFGGFV ATMGLLFAWLRQFPPQQMAAWIGLIGAGAILTIVVAFLVCGAIRRINVYETFVDGAKD GFQVAIGIVPYLVAVLVGIAVFRAAGCMDFLMQGLSVLFTHLGIDTRFVPALPVGLMK TLSGAGARGLMVDVMTTYGVDSFQGKLAAIIQGSTETTFYVLAVYFGSVGIKDTRYAL ACGLWADLVGLIGAVLVAYLFFA" sig_peptide 344465..344542 /locus_tag="Rpic_0327" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.947) with cleavage site probability 0.253 at residue 26" gene 345770..346351 /locus_tag="Rpic_0328" /db_xref="GeneID:6289519" CDS 345770..346351 /locus_tag="Rpic_0328" /note="KEGG: rso:RSc0453 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001897918.1" /db_xref="GI:187927431" /db_xref="GeneID:6289519" /translation="MEQWIDTLFATLALPKVGLPAIFVVSFISATLLPLGSEPAVFAY IKLNPEMFWPAIIVATLGNTLGGVVDWWMGYAAKLALVRYHLGRRRRQHNVEHAHHVP HPKRHREPPLDKKYFRWMRRIGPVSLLVSWLPGIGDPLCTLAGWLRLKFWPSVMYMAI GKFLRYLAMTAALMTLPDGFWHGILGWIKSVMM" gene 346553..350590 /locus_tag="Rpic_0329" /db_xref="GeneID:6289520" CDS 346553..350590 /locus_tag="Rpic_0329" /note="PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: rso:RSc0454 putative oxidoreductase protein" /codon_start=1 /transl_table=11 /product="FAD linked oxidase domain protein" /protein_id="YP_001897919.1" /db_xref="GI:187927432" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR004017" /db_xref="InterPro:IPR004113" /db_xref="InterPro:IPR006094" /db_xref="GeneID:6289520" /translation="MNAPLLIDAKLTAQDAAPRLREIPYNYTSFSDREIVIRLLGESA WQILDELRAERRTGRSARMLYEVLGDVWVVRRNPYLQDDLLDNPKRRQMLIDALNHRL AEIEKRRVADHDSHHDPVGDERASKVEQLVVHARRAVKAFQEEFAQVYDLRRRAQKVL GRVTAKDNIKFDGLSRVSHVTDATDWRVEYPFVVLTPDTEEEIAGIVKGCFELGLTII PRGGGTGYTGGAVPLTPFSAVINTEKLERLDAVEMTDLPGVDHPVATIYSGAGVVTRR VADAAEKAGLVFAVDPTSIDASCIGGNVAMNAGGKKAVLWGTALDNLAWWRMVDPDGN WLEVTRLNHNLGKIHDAPVVTFELKWFDGNAPVGAKLLRTETLTIEGRKFRKEGLGKD VTDKFLAGLPGVQKEGCDGIITSARWILHRMPKSIRTVCLEFFGQARDAIPSIVEIKD YLDAETKKPGGAILAGLEHLDERYLRAVGYATKSKRNAFPKMVLIGDIVGDDDDAVAR ATSEVIRLANGKSGEGFVAVSPEARKKFWLDRSRTAAIAKHTNAFKINEDVVIPLNRM GEYTDGIERINIELSIKSKLKLTDALLDFFAGSNLPLGRTDDANEIPSAELLEDRVQQ AQQLLRATRARWQYLLDHLDTPVTTARASLIGVGLGYLAQTIDDRLVNQPDANLFHLL QDRTIRVSWKAEIRAELRKIFNGGEFKPILDEAQAIHKKVLRGRVFVALHMHAGDGNV HTNIPVNSDDYDMLQDAHKAVARIMTLARSLDGVISGEHGIGITKLEFLTDEEIADFA AYKRRVDPNGRFNKGKLLRDINDPQGLAADLRNAYTPSFGLMGHESIIMQQSDIGAIS ESIKDCLRCGKCKPVCATHVPRANLLYSPRNKILATSLLIEAFLYEEQTRRGVSVKHW EEFADVGDHCTVCHKCVTPCPVKIDFGDVSMNMRNLLRKMGQKKFNPGTAAAMFYLNA TNPETINFTRKVMFDWGYKAQRLGNDILKKFAKKQTARPPATVGKPPVREQVIHFINK KMPGNLPKKTARALLDIEDNEIVPIIRNPKATTPDSEAVFYFPGCGSERLFSQVGLAT QAMLWHAGVQTVLPPGYLCCGYPQRGTGQFDKAEKIVTDNRVLFHRVANTLNYLDIKT VVVSCGTCYDQLAGYEFDKIFPGCRIIDIHEYLLEKGVKIDGVQGTRYMYHDPCHTPI KTMDPTKLVNQLMGGNIGADGQTHAIEKNDRCCGESGTLAISRPDISTQVRFRKEEEM QKGADKLRSLGQTSGQGGEAFNGDVKILTSCPACLQGLSRYTEDVSVQADYIVVEMAR HVLGETWLQDYVAQANAGGIERVLV" gene 350593..351030 /locus_tag="Rpic_0330" /db_xref="GeneID:6289521" CDS 350593..351030 /locus_tag="Rpic_0330" /note="PFAM: histidine triad (HIT) protein; KEGG: rso:RSc0455 hypothetical protein" /codon_start=1 /transl_table=11 /product="histidine triad (HIT) protein" /protein_id="YP_001897920.1" /db_xref="GI:187927433" /db_xref="InterPro:IPR001310" /db_xref="GeneID:6289521" /translation="MTERAPGCALCEADGGEPVWRNAKARVVLVEHARFPGFCRVIWN DHVAEQTDLSDNDRHWLMELVSRVERVLRAELAPDKINLASFGNFVPHLHWHVIPRYR WDTHFPEAVWGPEQRAPDNERMAEITAKLPALSYALQAALADA" gene 351145..352989 /locus_tag="Rpic_0331" /db_xref="GeneID:6289522" CDS 351145..352989 /locus_tag="Rpic_0331" /note="PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: rso:RSc0456 probable ATP-binding transport ABC transporter protein" /codon_start=1 /transl_table=11 /product="ABC transporter domain protein" /protein_id="YP_001897921.1" /db_xref="GI:187927434" /db_xref="InterPro:IPR001623" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR009248" /db_xref="InterPro:IPR010509" /db_xref="InterPro:IPR011527" /db_xref="GeneID:6289522" /translation="MTTPRTAATPDSHKDSISELTVHHGRLNLSETWQLIRPYWFSED RHKAWGLLALVVALNLFLVYMNVLFTDWNRLFYNALEQKNYGEFWTQLGRFSWIAALL IFGSIMRLYYSMMLQMRWRTWITGSFLDDWLSKQAFYRLEQTHSADNPDQRIADDLRN FTDATLTLALGFLNSAVTLVSFFGILWAVSGPLAFSLGGHDFVIPGYMVWFALLYSIV GSVIIHFVGRPLIGLSFQQERYEAYFRFLLVRVRENSESIALYRGEPTEKAILRGRFE RIRTNWNQLMDYTRRLTFASSGYAQFAIIFPFLVSAPRYFGGTLTLGGMMQVATAFGQ VQDAMSWFVTNYRTLVTWKASTNRLIEFQRAIRAAEREEEHRAGVRDVEVETAAVPAI EARGLALNLPNRKPEDLLVEPFDMTLARGERVLVSGPSGCGKSTLVRAVAGIWPYGSG RIEVPDDARVLFLPQRSYLPSGTLADALSYPDLATQYTAERLTQVLNACRLPALVDLL DEVSNWSLRLSPGEQQRLAFARALLQRPDYLFLDEATSALDEDTEAFMYSLMLESMPD VTIVSVAHRSTVARFHHRRLRYIPEGDPLTAVSYRVVEEPAHMALAAS" gene 353021..353437 /locus_tag="Rpic_0332" /db_xref="GeneID:6289236" CDS 353021..353437 /locus_tag="Rpic_0332" /note="PFAM: protein of unknown function DUF971; KEGG: rso:RSc0457 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF971" /protein_id="YP_001897922.1" /db_xref="GI:187927435" /db_xref="InterPro:IPR010376" /db_xref="GeneID:6289236" /translation="MAGLSADTPHPTGITVHTQSRVLQIAFADGKQFSLPFEYLRVLS PSAEVQGHGPGQEVLQTGKREVGIVGVEPVGNYAIRPLFSDGHDSGIFDWAYLYRLGI EHGALWQAYLDRLAAAGVDRDAPMAENAGHACGHSH" gene 353492..354223 /gene="ubiE" /locus_tag="Rpic_0333" /db_xref="GeneID:6289237" CDS 353492..354223 /gene="ubiE" /locus_tag="Rpic_0333" /note="Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone" /codon_start=1 /transl_table=11 /product="ubiquinone/menaquinone biosynthesis methyltransferase" /protein_id="YP_001897923.1" /db_xref="GI:187927436" /db_xref="InterPro:IPR004033" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="GeneID:6289237" /translation="MSQTHFGFQQVDEQEKAGKVAGVFHSVASKYDVMNDLMSGGLHR VWKMFTIAQAAVRPGYKVLDIAGGTGDLAKAFARQAGPTGEVWLTDINESMLRVGRDR LLDAGVLTPTALCDAEHIPFPNAYFDVVTVAFGLRNMTHKDRALAEMRRVVKPGGKVM VLEFSKVWQPLEKAYDVYSFKVLPWLGSKVAGDPESYRYLAESIRMHPDQETLKQMME QAGLDSVEYFNLTAGVVALHVGRRL" gene 354378..355397 /locus_tag="Rpic_0334" /db_xref="GeneID:6289238" CDS 354378..355397 /locus_tag="Rpic_0334" /note="PFAM: import inner membrane translocase subunit Tim44; KEGG: rso:RSc0459 hypothetical protein" /codon_start=1 /transl_table=11 /product="import inner membrane translocase subunit Tim44" /protein_id="YP_001897924.1" /db_xref="GI:187927437" /db_xref="InterPro:IPR007379" /db_xref="GeneID:6289238" /translation="MAGALVATLALGTAIDANAKRMGGSRSIGKQSSTVTQRQQTPPA TTPSPTQQAAPAAQPSPAAPAPGAPAAKPGRNWGGMLGGLAAGLGIGYLLSKFGLGAG LASLLSNLILIALVAFVVMWIIRKVRGSRPQGPAYATGGPSLGGDREPYVPQPAAPAP QASAPAAASLNTGNTSGLGAGAATAAQSWNLGGSAASAQAVNAQPAAAAPQQPWGVPA DFDTQAFLRNAKVYFIRLQAAWDAGNLNDIREFTTPEMFAEIKMDLADRGTSPNKTDV VSVEAEMLGIETQAAEYLASVRFSGMIREEANAPAQPFAEVWNLTKPTQGAGGWVLAG IQQLQ" gene 355543..356205 /locus_tag="Rpic_0335" /db_xref="GeneID:6289239" CDS 355543..356205 /locus_tag="Rpic_0335" /note="PFAM: Sterol-binding domain protein; KEGG: rso:RSc0460 hypothetical protein" /codon_start=1 /transl_table=11 /product="Sterol-binding domain protein" /protein_id="YP_001897925.1" /db_xref="GI:187927438" /db_xref="InterPro:IPR003033" /db_xref="GeneID:6289239" /translation="MSSTATSSPSSFPLVLMQPLLLALNHLLRQEPWAQETLRPFAGR VARFDLAPMSMTLQVDAAGLVTAPAPDVEPAVTVVVPLAAAAGDYATGGQAAVLKHVR IEGEAEFANVLSTLLRNLRWDAAEDLSRVFGDVIAQRMVSGAQAARTEATRVSRSLAE SVASYLTDEQPTLVRHARLAQFAADVAALRDAEARLVKRLERLEKLPRPATRTARQGE SA" gene 356202..357779 /gene="ubiB" /locus_tag="Rpic_0336" /db_xref="GeneID:6287597" CDS 356202..357779 /gene="ubiB" /locus_tag="Rpic_0336" /note="an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions" /codon_start=1 /transl_table=11 /product="putative ubiquinone biosynthesis protein UbiB" /protein_id="YP_001897926.1" /db_xref="GI:187927439" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR004147" /db_xref="InterPro:IPR010232" /db_xref="GeneID:6287597" /translation="MTRFFRLGKIVFVILYYGLDQLALSGFKSRRIRALVWLLTLGRK PKLPRGERLRLALEQLGPIFVKFGQVLSTRRDLLPPDVADELAKLQDRVPPFDPKVAA AIVEKSLGKPLSALFHRFDHHPVASASIAQVHFATLRGGPYDGREVAVKVLRPGMLPV IDSDLALMRDLATWIEKLWADAKRLKPREVVAEFDKYLHDELDLMREAANASQLRRNF AKSDLLLVPEVFWDWCTSEVFVMERMHGMRISHTEELRAAGVDMHKLARDGVEIFFTQ VFRDGFFHADMHPGNILVSVAPETLGRYIALDFGIVGALSEFDKNYLAQNFLAFFQRD YHRVAVLHIESGWAPEETRVEELEGAIRACCEPYFDRPLGEISLGLVLMRLFQTSRRF NVEVQPQLVLLQKTLLNVEGLGRQLDPDLDLWKTAKPFLERWMHEQIGWRGFVERLKV EAPQWANKLPDFPRLVHQILDRHSREDGNAQTAALTALLAEQKRTNRLLSAALLFVGG FAVGIVATHVLAWMARY" gene 357803..358432 /locus_tag="Rpic_0337" /db_xref="GeneID:6287598" CDS 357803..358432 /locus_tag="Rpic_0337" /note="PFAM: thiopurine S-methyltransferase; Methyltransferase type 12; KEGG: rso:RSc0462 hypothetical protein" /codon_start=1 /transl_table=11 /product="thiopurine S-methyltransferase" /protein_id="YP_001897927.1" /db_xref="GI:187927440" /db_xref="InterPro:IPR008854" /db_xref="InterPro:IPR013217" /db_xref="GeneID:6287598" /translation="MAQPPVFQSRDAADPAFWDERFTREHTPWDAAGVPAAFRQFCEA QPAPLSTLIPGCGNAYEAGWLAERGWPVTAIDFAPSAVASARAVLGPHADVVQLADFF RFSPPRPVHWIYERAFLCAMPRRLWPDYAAQVAKLLPPRGLLAGFFAVVEGREAMPKG PPFETTQPELDALLSPAFERISDMPIAETDSIPVFAGRERWQVWRRRAD" gene 358663..360102 /locus_tag="Rpic_0338" /db_xref="GeneID:6287599" CDS 358663..360102 /locus_tag="Rpic_0338" /note="PFAM: Na+/solute symporter; KEGG: rso:RSc0463 probable sodium/solute symporter transmembrane protein" /codon_start=1 /transl_table=11 /product="Na+/solute symporter" /protein_id="YP_001897928.1" /db_xref="GI:187927441" /db_xref="InterPro:IPR001734" /db_xref="GeneID:6287599" /translation="MLIWFVIVYWVISVGIGLWAALRVRSTADFAVAGRSLPFYVVTA TVFATWFGSEAVLGIPAEFLKDGLHGVVADPFGSSLCLVLVGLFFAKPLYRMNLLTIG DFYRNRFGRVAETLTTLCIVVSYLGWVAAQIKALGLVFYTVSDGAVSQDLGMMIGAGS VLVYTLFGGMWSVAVTDFIQMIIIVIGMLYIGWEVSGQAGGVGAVVAHAAASGKFSFW PAFNPIEVIGFVTAWITMMLGSIPQQDVFQRVTSSRTERIAGTASVLGGVLYFMFAFV PMFLAYSATLIDPEMVAKYIDTDSQMILPNLVLQHAPIFAQVMFFGALLSAIKSCASA TLLAPSVTFAENVLRPLLPNMDDKRFLRVMQAVVLTFTVLVTLFALNSHLSIFHMVES AYKVTLVAAFVPLAFGLFWRRATKQGGLLAIILGLAAWIWCEAFQPNAMLPPQLVGLL ASFGAMVLGSLGPQWIANRAPTTKAVTQA" gene 360350..360691 /locus_tag="Rpic_0339" /db_xref="GeneID:6287600" CDS 360350..360691 /locus_tag="Rpic_0339" /note="TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: rso:RSc0464 hypothetical protein" /codon_start=1 /transl_table=11 /product="regulatory protein, FmdB family" /protein_id="YP_001897929.1" /db_xref="GI:187927442" /db_xref="InterPro:IPR013429" /db_xref="GeneID:6287600" /translation="MPIYAYRCDACGHAKDVLQKMSDAPLTDCPACGAPAFKKQLTAA GFQLKGSGWYVTDFRGGSGGASAAAPATGSAAKTEPAAPAAAAASSDSASSSASTPAA SGGCGTSCACH" gene 360723..361460 /locus_tag="Rpic_0340" /db_xref="GeneID:6287073" CDS 360723..361460 /locus_tag="Rpic_0340" /note="PFAM: protein of unknown function DUF502; KEGG: rso:RSc0465 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF502" /protein_id="YP_001897930.1" /db_xref="GI:187927443" /db_xref="InterPro:IPR007462" /db_xref="GeneID:6287073" /translation="MKQKTSALKTWFLTGLLVLVPLAITLWVLSLIIGTMDQSLALLP SAWQPDQLFGRRIPGVGAILTLAFILIVGVLAHNFIGQKLVLWWEALVGRIPVVGPIY SSVKQVSDTLLSSNGNAFRKALLVQYPREGSWTIAFLTGRPGGDVENHLQGEYVSVYV PTTPNPTSGFFLMMPKADTIELDMTVDAALKYIVSMGVVAPEALPRRMDPPDASPQTE DRSPAQVPRDPSNPTALPAEGGAIAAP" sig_peptide 360723..360794 /locus_tag="Rpic_0340" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.800) with cleavage site probability 0.276 at residue 24" gene 361512..363383 /gene="aspS" /locus_tag="Rpic_0341" /db_xref="GeneID:6287074" CDS 361512..363383 /gene="aspS" /locus_tag="Rpic_0341" /note="catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes" /codon_start=1 /transl_table=11 /product="aspartyl-tRNA synthetase" /protein_id="YP_001897931.1" /db_xref="GI:187927444" /db_xref="InterPro:IPR002312" /db_xref="InterPro:IPR002314" /db_xref="InterPro:IPR004115" /db_xref="InterPro:IPR004364" /db_xref="InterPro:IPR004365" /db_xref="InterPro:IPR004524" /db_xref="InterPro:IPR006195" /db_xref="GeneID:6287074" /translation="MRDASLAARFAENHNMQMRTQYCGQVTEQLLGQSVTLSGWAHRR RDHGGVIFIDLRDREGLVQVVCDPDRPEMFKVAEGVRNEFCLQVKGVVRARPEGTTNA NLTSGKVEVLCHELTVLNASVTPPFQLDDDNLSETTRLTHRVLDLRRPQMQYNLRLRY KVAMEVRKYLDDKGFIDIETPMLTKSTPEGARDYLVPSRVNAGQFFALPQSPQLFKQM LMVSGFDRYYQITKCFRDEDLRADRQPEFTQIDCETSFLSEQEIRDLFEEMIRTVFKN TMSVDLDAKFPVMEFREAMARFGSDKPDLRVKLEFTELTDAMKDVDFKVFSGPANAEG GRVVALRVPGGASLSRGDIDAYTKFVEIYGAKGLAWIKVNEVAKGRDGLQSPIVKNLH DAAIAEILKRSGAQDGDILFFGADRAKVVNDAMGALRLKVGHSDFAKSTGLFEDAWKP LWVIDFPMFEYDEEDARWVAMHHPFTSPKDEHLEYLETDPGKCIAKAYDMVLNGWEIG GGSVRIYREEVQSKVFRALKINDEEARAKFGFLLDALQYGAPPHGGIAFGLDRVVTMM AGADSIRDVIAFPKTQRAQDLLTQAPSPVDEKQLRELHIRLRAAEAKVAAPTAATTA" gene 363546..364406 /locus_tag="Rpic_0342" /db_xref="GeneID:6287075" CDS 363546..364406 /locus_tag="Rpic_0342" /note="KEGG: rso:RSc0467 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001897932.1" /db_xref="GI:187927445" /db_xref="GeneID:6287075" /translation="MDYIDFARTWVVTHAEFLLTWLITALLVMTLAWIEIRRATRRAA MAMTEAVATTVAACVPEIAAAAQSAHPGVSASASSPGLVEAMRALGHLSADRMHWLHA VANLRLPETALPPAAPGMPVHPLVYDTPRPLAEAHLAAERCFADHARVLQAERRALQA LETAEREGSSELHRIERETSAIVERFDQANAQSEQTDVQRFLIQKFNTLGNRERELTA QLAALRQQLGERTEALWAQSQRAADDYAAMLDPLVAVARRELGHETATDETALWLART RTGQGPLRAA" gene 364523..365008 /gene="ntpA" /locus_tag="Rpic_0343" /db_xref="GeneID:6287076" CDS 364523..365008 /gene="ntpA" /locus_tag="Rpic_0343" /note="converts dATP to dAMP and pyrophosphate" /codon_start=1 /transl_table=11 /product="dATP pyrophosphohydrolase" /protein_id="YP_001897933.1" /db_xref="GI:187927446" /db_xref="InterPro:IPR000086" /db_xref="InterPro:IPR002667" /db_xref="InterPro:IPR003564" /db_xref="GeneID:6287076" /translation="MPHKIPVSVLVVIHTPDLHVLVMERADHPGFWQSVTGSCDALDE PLADTARREVLEETGIDAAQHHLIDWGHHIEYEIYPRWRHRYAPGITRNTEHWFGLLV SGKMPVRMSPREHVQAEWLPYQDAAARCFSRSNAEAILQLPERLAAYHARQAALTKDQ A" gene 365010..365756 /locus_tag="Rpic_0344" /db_xref="GeneID:6287979" CDS 365010..365756 /locus_tag="Rpic_0344" /note="PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rso:RSc0469 hypothetical protein" /codon_start=1 /transl_table=11 /product="Endonuclease/exonuclease/phosphatase" /protein_id="YP_001897934.1" /db_xref="GI:187927447" /db_xref="InterPro:IPR005135" /db_xref="GeneID:6287979" /translation="MLRLRVATYNIHKGVTGIARRVRVHDVRQGLHSMDADIVFLQEV QDRNDRLVAAELFDPNYTQLRYLATDVYPHTVYGRNAVYEHGHHGNAILSRFPILLSE NLDISDHRFEQRGLLHAVTDLGFGEVHLLCAHFGLFARSRQRQAEALVDRVRSVVPPD APLVVAGDFNDWNNRLDRTICQALGATEVADKAANARPVRTFPSHMPWLRLDRIYVRG FDIERAHALTGREWAQRSDHVPLLAELAHP" gene 365753..367021 /locus_tag="Rpic_0345" /db_xref="GeneID:6287980" CDS 365753..367021 /locus_tag="Rpic_0345" /note="PFAM: phospholipase D/Transphosphatidylase; KEGG: rso:RSc0470 hypothetical protein" /codon_start=1 /transl_table=11 /product="phospholipase D/Transphosphatidylase" /protein_id="YP_001897935.1" /db_xref="GI:187927448" /db_xref="InterPro:IPR001736" /db_xref="GeneID:6287980" /translation="MRVVRDAGPLRSEWRRGKPLPGNDVDLLCGGAEFFPALIEAIDA AQRRVALETYIYTDDATAHSVTEALARAARRGVDVHLTIDGFGTGLLPPSIAAMLETA GVNLRIYRPVRGFRLQRRHLRRLHRKIAVIDDDEAFVGGINIIDDLNHAPFNDTALGP RYDFAVRVRGPLVAQIALTVDRLWWQMGVRVGMREVGVTGVAAEFPVMTDTPRPRHRG ASGRESERAPGTVLASLVLRDNVRNRRAIEREYLRALGAARHEVIIANAYFLPGVRFM RALAACRRRGVRVRLLLQGQVEYRLQHYATRSLYHMLLRDNVEIHEYTASFLHAKVAV VDDRWATVGSSNIDPFSLLLAREANVVVWDSTVANELRGALEGAMAHHARRVLADAHA ARRWWWRLADWCAYRLVRLGVVISGRAAQY" gene 367061..368725 /locus_tag="Rpic_0346" /db_xref="GeneID:6287981" CDS 367061..368725 /locus_tag="Rpic_0346" /note="PFAM: coenzyme A transferase; KEGG: rso:RSc0471 putative transferase protein" /codon_start=1 /transl_table=11 /product="coenzyme A transferase" /protein_id="YP_001897936.1" /db_xref="GI:187927449" /db_xref="InterPro:IPR002048" /db_xref="InterPro:IPR004165" /db_xref="GeneID:6287981" /translation="MQVITADEAARLVQPGWTVACAGFVGAGHAEAVTHALERRFLTT GEPRDLTLVYSAGQGDRATRGVNHFGNPEMTRCVVGGHWRSATRLADMALAEQCDAFN LPQGVLTHLYRAIAGGKPGVLTKMGLHTFVDPRTELDPRYHGGAINHRAKAARAAGKA SWVEYERFRGDDYLFYPSFPLHCVFLRGTAADPRGNISTHEEAFHHELLAMAQAARNS GGIVIAQVRRLVDRHDNLQAIHVPGILVDYVVVAEDEAEHQMTFGEAFNPTYIRPWQG EAIQLKEDAIEASDALEASQHGALDARTLVQRRAVLELMAQQPRVVNLGVGMPAAVGA LAEQEGARGFTLTVEAGPIGGTPADGLSFGASAYPEAVVDQPAQFDFYEGGGIDLAIL GLAELDGAGNVNVSLFGEGGDTIVAGVGGFINITQSARSIVFMGTLTAGGLQVEAEGG KLRIVREGRLKKIVPAVSHLTFNGEYAARSGIPVRYVTERAVFEMRADGNGGRRLTLT EIAPGIDLQRDVLDQCAAEVAVAADLREMDARIFRRGAMCAGITPV" gene 369079..369720 /locus_tag="Rpic_0347" /db_xref="GeneID:6287982" CDS 369079..369720 /locus_tag="Rpic_0347" /note="PFAM: regulatory protein TetR; KEGG: rso:RSc0472 putative transcription regulator protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_001897937.1" /db_xref="GI:187927450" /db_xref="InterPro:IPR001647" /db_xref="GeneID:6287982" /translation="MRHPTARLESNHAAATPMRKGELTRAAILDAALELASRDGLEGL TIGVLAERMQMSKSGVFAHFGSREDLQVEVVREYHKRFEQEVFYPSLTEPRGLPRLWS MVRRWMERRIQEVTTGCIYISGAVEYDDRAESPVRDELVKSVTIWRAALARAIAQAKE EGHLRAEADPQLMLFEMYSLELGLHHDARFLRLPNSAELAMVALNKLIQSYRT" gene 369773..371560 /locus_tag="Rpic_0348" /db_xref="GeneID:6287325" CDS 369773..371560 /locus_tag="Rpic_0348" /note="PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rso:RSc0473 putative acyl-CoA dehydrogenase oxidoreductase protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_001897938.1" /db_xref="GI:187927451" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="GeneID:6287325" /translation="MGQYTAPLRDMQFVLHELLGVENHLKEMPQHAEIDADTINQVIE EAGKFCSEVIFPLNQSGDREGCTYHGDGVVTAPKGFKEAYQQYVEAGWPSLGCDPEYG GQGLPILINNALYEMLNSANQAWTMYPGLSHGAYEALHAHGTDELKQRYLPKLVSGVW TGTMCLTEPHCGTDLGILRTRAEPLADGSYAITGTKIFISAGEHDLAENIIHLVLARL PDAPGGTKGISLFVVPKFIPDANGNPGERNTVKCGSIEHKMGIHGNATCVINLDGARG WMVGEPNKGLNAMFVMMNAARLGVGMQSLGLTEVAYQNSAAYAKERLQMRSLSGPKAP DKPADPIIVHPDVRRMLLTQRAFAEGGRAFSYWIALQIDRELSHSDESARKDAADLVA LLTPIAKAFLSDNAFISTNEGMQVFGGHGYIAEWGMEQYVRDARINMIYEGTNTVQSL DLLGRKILGDMGAKMKKFGKLVQDFVEAEGTNEAMQEFINPLADIGDKVQKLTMEIGM KAMANPDEVGAAAVPYLRVVGHLVFSYFWARMAKIALEKQDSGDSFYKVKLATARFYF AKLLPETASQIRMARAGGATLMALEADLF" gene 371636..374116 /locus_tag="Rpic_0349" /db_xref="GeneID:6287326" CDS 371636..374116 /locus_tag="Rpic_0349" /note="PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: rso:RSc0474 putative 3-hydroxyacyl-CoA dehydrogenase oxidoreductase protein" /codon_start=1 /transl_table=11 /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding" /protein_id="YP_001897939.1" /db_xref="GI:187927452" /db_xref="InterPro:IPR001753" /db_xref="InterPro:IPR006108" /db_xref="InterPro:IPR006176" /db_xref="GeneID:6287326" /translation="MTRTELPTSAQPQAGQRSNFLVRRVAVLGAGVMGAQIAAHLINA KVPVTLFDLPAKEGPKSGIALKAIENLKKLSPAPLGIKDDANLIQAANYEDDIEKLRD CDLVIEAIAERMDWKHDLYKKVAPHIAPHAIFASNTSGLSITELSDGFDAELKSRFCG VHFFNPPRYMHLVELIPTAHTRGDILDKLETFLTSALGKGVVRAKDTPNFIANRVGIF SILAVFAESAKYGIPFDVVDDLTGSKLGRAKSATFRTADVVGLDTMAHVIKTMQDNLK EDPFAPVYATPPVLAKLVEAGALGQKAGAGFYKKEGKEIKVLDPQSGQYGPSGKKADD IVVRILKKEPAERLKLLRESTNPQAQFLWAVFRDVFHYIAVYLEQIADSAAEVDLAIR WGFGWNSGPFEDWQEAGWKQVAEWVKEDIEAGKALSNAALPQWVFSGPVADNGGVHSA QGSWSAKQGTFLQRSTLPVYGRQVFRAPIKGATTVNPLTYGKTIEETDAVRIWVDDAA GQDDVLVVSFKSKMNTIGPSVIDGLTRAVDLAEAGYKGLVVWQPTSLKLGAPGGPFSA GANLEEAMPAFMMGGAKGIEPFVKKFQDGMMRVKYAGVPVVSAASGIALGGGCELLLH SAKRVAALETYIGLVEVGVGLVPAGGGLKEAALAAAKAAQAAGSTNILQFLTNRFQAA AMAKVSSSALDAQKIGYLQPTDTIVFNVHELLHVARNEVRALSDSGYRAPLRPVGIPV AGRSGIATIKASLVNMRDGGFISQHDFTIASRIAEAVCGGDVEAGALVDEEWLLALER KAFVDLLGSAKTQERIMGMLQTGKPVRN" gene 374150..375349 /locus_tag="Rpic_0350" /db_xref="GeneID:6287327" CDS 374150..375349 /locus_tag="Rpic_0350" /EC_number="2.3.1.16" /note="Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_001897940.1" /db_xref="GI:187927453" /db_xref="InterPro:IPR002155" /db_xref="GeneID:6287327" /translation="MTKQLQDAYIVAATRSPIGKAPKGTLKNLRPDDLLATILKSAVA QVPNLDPALIEDAIVGCAIPEAQQGLNVARIGALLAGLPNSVGGVTVNRFCASGLTAV AMAADRIRVGESDVMIAAGVESMSMVPMMGNSPSMSPEIFTRDENVGIAYGMGLTAEK VAQQWKISREAQDAFSLASHQKALAAQQAGEFKDEITPIEIIEKFPNLGTGAIDIRTR TMSLDEGPRADTSVEGLGKLRAVFANKGSVTAGNSSQTSDGSGALILVSEKILKQFNL VPLARFVSFAVRGVPPEIMGIGPKEAIPAALKAGGLTQDQIDWIELNEAFAAQSLAVI QDLGLDTSKINPLGGAIALGHPLGATGAIRAATVVHGLRRRNQKYGMVTMCVGTGMGA AGIFERM" gene 375568..376533 /locus_tag="Rpic_0351" /db_xref="GeneID:6287328" CDS 375568..376533 /locus_tag="Rpic_0351" /note="PFAM: DegV family protein; KEGG: reu:Reut_A0449 DegV" /codon_start=1 /transl_table=11 /product="DegV family protein" /protein_id="YP_001897941.1" /db_xref="GI:187927454" /db_xref="InterPro:IPR003797" /db_xref="GeneID:6287328" /translation="MGNTIGDTIVLTDAACDMPRSMIDQLGLGVVPFRIRAGELFVED RRDEAALPQLYRKYLVDKQDHYAESIPLLEREIEDFLLKHVVTQHDRALLLTIASSRS HFYSHATGAVVGTTAKSFKPRKDAGRSGLFELTVVDTGAIGPGQALMVHEAARMLREG AEVRDVVHVIENRLRDASHVYLVPDELLYMYTRAKQKGEKSITWGRYMMGTAFNVRPL IHMHRGDTEAIAKVRGSDEGIRRLLAHTETMITEERLATPVVAITYSGSLDTVRRMEP VQALMRTAQEHGVEVLLAPMSLTVALNVGANAFSVGYLSDSPVPI" gene 376560..377324 /locus_tag="Rpic_0352" /db_xref="GeneID:6288908" CDS 376560..377324 /locus_tag="Rpic_0352" /note="Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase" /protein_id="YP_001897942.1" /db_xref="GI:187927455" /db_xref="InterPro:IPR001753" /db_xref="GeneID:6288908" /translation="MSIRTETADGVLTLTFDRLDRKNAITAAMYQTLADALVAAETDP AIRVIVLAGHESVFTAGNDLEDFMKNPPKDESAPVHQFLRAISTASKPLIASVSGAAV GVGTTMLLHCDLVYASETAKLSMPFAQLGLCPEAASSLLLPQLAGYHRAADKLLFGEP FDANEARELGLVNRVLPAGELDAFVRTQARKLTLLPPASLRATKRLMKEGATPQIAER MSVEGKQFGEMLRAPEAREAFTAFFEKRRPDFSKFN" gene complement(377390..377827) /locus_tag="Rpic_0353" /db_xref="GeneID:6288909" CDS complement(377390..377827) /locus_tag="Rpic_0353" /note="PFAM: thioesterase superfamily protein; KEGG: rso:RSc0477 hypothetical protein" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_001897943.1" /db_xref="GI:187927456" /db_xref="InterPro:IPR006683" /db_xref="GeneID:6288909" /translation="MLPCIIMSDTHAATETVTLPADKQPAVRVMPMPSDANVHGDVFG GWIMSQVDIAGSIPAVVRANGRVATIAVNSFVFKQPVYVGDLVSFYANVVKTGRTSIT VDVEVYAQRMHASGRHATVKVTEATLTYVATDETRKPRVLPPL" gene 377919..379757 /locus_tag="Rpic_0354" /db_xref="GeneID:6288910" CDS 377919..379757 /locus_tag="Rpic_0354" /note="PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc0478 probable composite ATP-binding transmembrane ABC transporter protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_001897944.1" /db_xref="GI:187927457" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011527" /db_xref="GeneID:6288910" /translation="MRRFPASSEPPPPGAARGDWRTIKSLLPYLLAYKWRVALALSFL IAAKVANLGVPMVMKRLIDAMNVSPSDPRALLVVPVGIIIGYGLLRLSTSLFSELREI LFAKVTESSVRTLALQVFRHLHALSLRFHLERQTGGMSRDIERGTRGIQSLISYSLYS ILPTLVEVGLVITYFFVKYDVWFALITFCALVSYIVFTVTVTNWRTHFRRKMNELDSR ANQKAIDSLLNFETVKYFGNEDYEARRYDENLKHYRAAAIRSQNSLSVLNFGQQLIVA TALILILYRATQGVAAGHMTLGDLVLVNTLMLQIYIPLNFLGVIYRELKQAVTDMDRM FNLLQTNREVADKPDAPPLTVHAGEVRFAHVDFSYEANRQILFDVDFTIPAGTTTAVV GQSGSGKSTLARLLFRFYDVKSGAIQIDGQDLRDVTQSSVRAAIGIVPQDTVLFNDSI YYNIAYGRPDASREEVIEAARAAQIHHFVESLPDGYETQVGERGLKLSGGEKQRVAIA RTLLKRPPILVFDEATSALDSRTEHAIQEELMRLAQNHTTLVVAHRLSTIVRAHQILV MEHGRIIERGTHESLLRAEGRYAQMWRMQAREPERVAEEAEDARAG" gene 379773..380717 /locus_tag="Rpic_0355" /db_xref="GeneID:6288911" CDS 379773..380717 /locus_tag="Rpic_0355" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc0479 putative transcription regulator protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_001897945.1" /db_xref="GI:187927458" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:6288911" /translation="MELKWLEDFISLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLG NELIDRSSYPTRLTPAGEVFYEQALAMLAQVSETRALMRGQRPASASTIDFAVPHTLS LTFFPGWLAQVEEKIGKLQCRLRALNVHDAVMTLVEGGCDLVMVYHHARQMIQLDPTR YDMLVLGTERLSPFSKPDASGRPIYRLVPTARKPIAYLSYTPNAFLGRMVDVLLENSP VAPLLDKCYETDMAEALKVMALAGHGVAFLPESAVREDVAAGRLVRAEGKGGGTLSIE MEIRLYREHPQSGAHDRRHPQSKRKRELIDTLWSALAG" gene 380869..382170 /locus_tag="Rpic_0356" /db_xref="GeneID:6287013" CDS 380869..382170 /locus_tag="Rpic_0356" /note="PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: rso:RSc0480 probable glutamate dehydrogenase (NAD(P)+) oxidoreductase protein" /codon_start=1 /transl_table=11 /product="Glu/Leu/Phe/Val dehydrogenase" /protein_id="YP_001897946.1" /db_xref="GI:187927459" /db_xref="InterPro:IPR006095" /db_xref="InterPro:IPR006096" /db_xref="InterPro:IPR006097" /db_xref="GeneID:6287013" /translation="MSNVASPSTLQHAIPSYLPADNLGPWGIYLQQVDRVTPYLGSLA RWVETLKRPKRALIVDVPIQMDDGRIAHFEGYRVQHNTSRGPGKGGVRFHQDVTLSEV MALSAWMSVKNAAVNVPYGGAKGGIRVDPRKLSSGELERLTRRYTSEIGIIIGPNKDI PAPDVNTNAQIMAWMMDTYSMNEGSTATGVVTGKPIALGGSLGRREATGRGVFVVGSE AARNLGIDVKGARVVVQGFGNVGSVAAKLFHDAGAKVIAVQDHKGIVFNGNGLDVDAL IKHVDHNGSVAGFAAEAVSQDDFWALDCEFLIPAALEGQITAKNAPHIKAKIVVEGAN GPTTPEADDILRDRGILVCPDVIANAGGVTVSYFEWVQDFSSFFWTEDEINQRLVRIM QDAFRGVWQVAQDNKVTLRTAAFIIACTRILQARQERGLYP" gene 382692..383600 /locus_tag="Rpic_0357" /db_xref="GeneID:6287014" CDS 382692..383600 /locus_tag="Rpic_0357" /note="PFAM: extracellular solute-binding protein family 3; KEGG: rso:RSc0481 probable amino-acid-binding periplasmic (PBP) ABC transporter protein" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 3" /protein_id="YP_001897947.1" /db_xref="GI:187927460" /db_xref="InterPro:IPR001638" /db_xref="GeneID:6287014" /translation="MNLAKLATVVAAVGVAVGAFGSAAHAEELTGTLKKIKDTGTITL GVRDSSIPFSYNVGGVRTIGYSYDVATKIAEDVKKQLGLKDLKVNEIPVTSQNRITLL QNGTIDLECGSTTNNLERQKQASFTNTIFIIGTRIMVKKDSGVKDWADLKGKNVVTTA GTTSERLLRKMNDEKQMGMNIISTKDHGQSFLTLESGRAVAFMMDDALLYGERAKAKN PAEWVVVAKPQSREAYGCMVRKDDKPFKALADKTIAGMMKDGTINAEYKKWFEQPVPP KGVNMEFPLSDDMKALIKNPNDKALD" sig_peptide 382692..382772 /locus_tag="Rpic_0357" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 27" gene 383700..384428 /locus_tag="Rpic_0358" /db_xref="GeneID:6287015" CDS 383700..384428 /locus_tag="Rpic_0358" /note="TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc0482 probable glutamate/aspartate transmembrane ABC transporter protein" /codon_start=1 /transl_table=11 /product="polar amino acid ABC transporter, inner membrane subunit" /protein_id="YP_001897948.1" /db_xref="GI:187927461" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:6287015" /translation="MNYHWNWGVFFTEAAQNQTYLDWLLAGLKTTVVLGLSSWIIALV IGSVLGVLRTVPNKWLSGLAAAYVEVFRNIPLIVQLFIWYFVMPELVPGGDYIKQMNP ATAMFLSAMLCLGTFTAARVCEQVRSGINSLPRGQRNAGLAMGFTLAQTYRYVMLPMS FRIIVPPLTSEFLNIFKNSAVASTIGLLELAAQGRQLVDYTAQPYESFIAVTLMYMLI NLTVMGLMRWVEARSRLPGFIGGK" gene 384446..385129 /locus_tag="Rpic_0359" /db_xref="GeneID:6287016" CDS 384446..385129 /locus_tag="Rpic_0359" /note="TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc0483 probable glutamate/aspartate transmembrane ABC transporter protein" /codon_start=1 /transl_table=11 /product="polar amino acid ABC transporter, inner membrane subunit" /protein_id="YP_001897949.1" /db_xref="GI:187927462" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:6287016" /translation="MAYQFDFSSINVDNMRVLGEGMLLSLEITGTAILVGIVWGTLLA MMRLSGIKPLQVFGQAYVNLFRSIPLVMVLLWFFLIVPQVLQKIFNLSPATDMRMTSA LVAFALFEAAYYSEIIRAGIQSVSRGQMFAAYAMGMTYGQAMRLVILPQAFRNMIPLL LTQAIVLFQDTSLVYVSALSDFFTQAYNIGERDGRIVELLLFAGLCYFVICFGASVLV KRLQKKVTQ" gene 385126..385860 /locus_tag="Rpic_0360" /db_xref="GeneID:6287680" CDS 385126..385860 /locus_tag="Rpic_0360" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc0484 putative glutamate/aspartate transport ATP-binding ABC transporter protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_001897950.1" /db_xref="GI:187927463" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:6287680" /translation="MIEIKNVSKWYGSFQVLTDCTTSVKKSEVVVVCGPSGSGKSTLI KTVNALEPFQKGEIFVDGTSVGAKGTNLPKLRSRVGMVFQNFELFPHLSITENLTIAQ QKVLGRSKEEAMAKGLKYLDRVGLKAHAAKYPGQLSGGQQQRVAIARALSMDPICMLF DEPTSALDPEMVNEVLDVMVELAKEGMTMMCVTHEMGFARKVANRVIFMDQGRIVEDC EKEEFFGNIDARSDRAKQFLSKILSH" gene complement(386050..386880) /locus_tag="Rpic_0361" /db_xref="GeneID:6287681" CDS complement(386050..386880) /locus_tag="Rpic_0361" /note="PFAM: glutamine amidotransferase class-II; KEGG: rso:RSc0485 hypothetical protein" /codon_start=1 /transl_table=11 /product="glutamine amidotransferase class-II" /protein_id="YP_001897951.1" /db_xref="GI:187927464" /db_xref="InterPro:IPR000583" /db_xref="GeneID:6287681" /translation="MCQLLGMNCAEPTDVTFSFTGFAARGGVTDHHADGFGVAFFEDK ACRLFIDNQSAGTSPVAELVKRYPIKSKNVISHIRKATQGTVRLENCHPFMRELWGRH WIFAHNGDLKNFSPFLSGVYQPVGDTDSELAFCFIMQALRKRFPGSQPPLNELFYALS DITKEITRYGVFNFLLCNGQAQFAHCSTRLYYIVRQWPFSTAHLIDADMTIDFAKYTT PADRVAVIATAPLTDNEVWTQFAPGELLMFESGQATMATKVPIPEAVQIANAANTACT" gene 387039..388337 /locus_tag="Rpic_0362" /db_xref="GeneID:6287682" CDS 387039..388337 /locus_tag="Rpic_0362" /EC_number="1.1.1.81" /note="PFAM: MOFRL domain protein; KEGG: rso:RSc0486 putative hydroxypyruvate reductase oxidoreductase protein" /codon_start=1 /transl_table=11 /product="Hydroxypyruvate reductase" /protein_id="YP_001897952.1" /db_xref="GI:187927465" /db_xref="InterPro:IPR000897" /db_xref="InterPro:IPR007835" /db_xref="GeneID:6287682" /translation="MKLDRTAARALLLESYAAAVGAADPLKIVADFLPPPHAGGKTLV VGAGKAAASMALAVEQAYAGRAKIEGLVITRYAHGLPTEHIRVIEAGHPVPDEAGEQA AQEILDRVCALTERDRLIVLVSGGGSSLLSLPAEGIPMGDLKDVTRELLRCGAPITDM NIVRKHLSRIQGGRLAAASRAPATTLIVSDVAGDDPSAIASGPTVPDASTYADALAII KRWGAQIPDTVHAHLERGARGEIAETPKPGDACFARVTNHVIATAQQSLQAGAQVFAT RGIHTAILGDTVTGEAREVAQVYGALARQVRQHGTPFVAPVALISGGECTVTIPPGVT GGRGGRCAEFLLSLGVTLEDMGDIYALAADTDGIDGSEDNAGALLDPGSIARAAAKGV AARAALDAHDAYGFFAAADDLIVTGPTRTNVNDYRVILIL" gene 388371..389405 /locus_tag="Rpic_0363" /db_xref="GeneID:6287683" CDS 388371..389405 /locus_tag="Rpic_0363" /EC_number="3.5.2.3" /note="catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis" /codon_start=1 /transl_table=11 /product="dihydroorotase" /protein_id="YP_001897953.1" /db_xref="GI:187927466" /db_xref="InterPro:IPR002195" /db_xref="InterPro:IPR004721" /db_xref="InterPro:IPR006680" /db_xref="GeneID:6287683" /translation="MTDTLTIVRPDDWHLHLRDGDALADVVGDTARQFGRAIIMPNLK PPVTTTAQARAYRERILAALPAGTQFEPLMTLYLTDNTSPEVIREARASGFIHGVKLY PAGATTNSDAGVTDLRRCAKTLEAMQEVGMPLLVHGEVTDPTVDIFDREAVFIDTVML PLRRDFPALKVVFEHITTKHAAEYVRDAEGPVGATITAHHLLYNRNALFVGGIRPHYY CLPVLKRETHRLALVAAATSGHPRFFLGTDSAPHAKGVKEHACGCAGCYTALHAMELY AEAFEDANALDKLEGFASLHGPDFYGLPRNAGTLTLTRSQWQLPAEVPFGEQTLVPLR GGEMLRWKSV" gene 389410..390210 /locus_tag="Rpic_0364" /db_xref="GeneID:6288759" CDS 389410..390210 /locus_tag="Rpic_0364" /note="KEGG: rso:RSc0488 putative transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001897954.1" /db_xref="GI:187927467" /db_xref="GeneID:6288759" /translation="MAADLGAIDWGHPAFAPLAAVGAPLADAIARGADLRDALNAQPA AQAIRTCSGHAVRFVPQDALPAGTAYEANIAATGEVPTRDNLHDFFNALIWLHWPRAK AALNARQARAITQDGIGTARGTVRDAATLFDENALIFLHTQDAPERYLTGFDWRGLFV EGRATWGATCAVLPFGHAVLEKLVAPYKSITAHAWPVRVAALPAERPSLDAALAETLL HADLAPRHFRPLPVMGIPGWCNANEDAGFYLDTTVFRLGRRRFVPEQC" gene 390274..390549 /gene="rnpB" /locus_tag="Rpic_R0066" /db_xref="GeneID:6288760" ncRNA 390274..390549 /gene="rnpB" /locus_tag="Rpic_R0066" /ncRNA_class="RNase_P_RNA" /product="Bacterial RNase P" /note="Bacterial RNase P class A as predicted by Rfam (RF00010), score 180.33; RNA component of RNaseP" /db_xref="GeneID:6288760" gene complement(390571..391017) /locus_tag="Rpic_0365" /db_xref="GeneID:6288761" CDS complement(390571..391017) /locus_tag="Rpic_0365" /note="PFAM: OsmC family protein; KEGG: rso:RSc0489 hypothetical protein" /codon_start=1 /transl_table=11 /product="OsmC family protein" /protein_id="YP_001897955.1" /db_xref="GI:187927468" /db_xref="InterPro:IPR003718" /db_xref="GeneID:6288761" /translation="MDCTVSWTGPDGMAFLAETGSGHLVTMDGAPDGGGRNLAPRPME MVLLGTGGCTAYDVVLILKRGRQDVQGCSVKLHADRAETDPKVFTRIHFTFTVTGRNL KRETVERAVQLSHEKYCSASIMLAKTAEITHSLELVDLATQPTASE" gene 391718..392146 /gene="rplM" /locus_tag="Rpic_0366" /db_xref="GeneID:6289183" CDS 391718..392146 /gene="rplM" /locus_tag="Rpic_0366" /note="in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L13" /protein_id="YP_001897956.1" /db_xref="GI:187927469" /db_xref="InterPro:IPR005822" /db_xref="InterPro:IPR005823" /db_xref="GeneID:6289183" /translation="MKTFSAKPHEVKRDWYVIDATDKVLGRVASEVAHRLRGKHKPEF TPHVDTGDFIIVINAAKLRVTGAKTTDKKYYRHSGYPGGIYETTFGKMQQRFPGRALE KAVKGMLPKGPLGYAMIKKLKVYAEGSHPHEAQQPKALEI" gene 392159..392551 /gene="rpsI" /locus_tag="Rpic_0367" /db_xref="GeneID:6289184" CDS 392159..392551 /gene="rpsI" /locus_tag="Rpic_0367" /note="forms a direct contact with the tRNA during translation" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S9" /protein_id="YP_001897957.1" /db_xref="GI:187927470" /db_xref="InterPro:IPR000754" /db_xref="GeneID:6289184" /translation="MIGNWNYGTGRRKSAVARVFIKSGKGDIIVNGKAINEYFARETS LMIVRQPLELTNHAATFDIKVNVVGGGETGQAGAVRHGITRALIDYDATLKPALSKAG LVTRDAREVERKKVGLRKARRAKQFSKR" gene 392783..393538 /locus_tag="Rpic_0368" /db_xref="GeneID:6289185" CDS 392783..393538 /locus_tag="Rpic_0368" /note="KEGG: rso:RSc0492 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897958.1" /db_xref="GI:187927471" /db_xref="InterPro:IPR000299" /db_xref="GeneID:6289185" /translation="MKARRLLRRASVLAPNVTVRSRLPWPVTVLLVAVVLGLAAAAAL WAFEEGRRLTGPHDADLRAMNRELTARLAAVQAERDKLSASAGTVDARLGIAEGAQAQ MAEQLKALETENAQLKEDLAFFDSLLPAPTNSAGIYVRSFRIAPDEAQPTRMRFRVLL MQGGGKAFAPVSEFEGQLALTLNVVQAGKPATIDFPGAAASGSPATSARVKLTHYQRL EGWVDVPPGTTVQSVMVKVLQNGKIKASQSFSI" sig_peptide 392783..392923 /locus_tag="Rpic_0368" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.840 at residue 47" gene 393582..393986 /locus_tag="Rpic_0369" /db_xref="GeneID:6289186" CDS 393582..393986 /locus_tag="Rpic_0369" /note="PFAM: protein of unknown function DUF583; KEGG: rso:RSc0493 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF583" /protein_id="YP_001897959.1" /db_xref="GI:187927472" /db_xref="InterPro:IPR007607" /db_xref="GeneID:6289186" /translation="MLFGKKKGLAIETLLGARTKLEGDLRFSGGLRIDGEIKGNIYGD PDKPSMLVITDSARVEGEVHVGHLILNGTVVGPVHVAELLELQPKARIEGNVQYAALE MHQGAVVMGTLTHATPGDVKLLPNLKLASNQD" gene 394113..394487 /locus_tag="Rpic_0370" /db_xref="GeneID:6287848" CDS 394113..394487 /locus_tag="Rpic_0370" /note="essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors" /codon_start=1 /transl_table=11 /product="iron-sulfur cluster insertion protein ErpA" /protein_id="YP_001897960.1" /db_xref="GI:187927473" /db_xref="InterPro:IPR000361" /db_xref="InterPro:IPR016092" /db_xref="GeneID:6287848" /translation="MNAVAQAATPDVNEVPAPLVFTDSAADKVKQLIEEEGNPELKLR VFVQGGGCSGFQYGFTFDEETNEDDTTMTKNGVSLLIDSMSYQYLVGAEIDYKEDING AQFVIKNPNASTTCGCGSSFSV" gene complement(394554..395708) /gene="anmK" /locus_tag="Rpic_0371" /db_xref="GeneID:6287849" CDS complement(394554..395708) /gene="anmK" /locus_tag="Rpic_0371" /note="catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling" /codon_start=1 /transl_table=11 /product="anhydro-N-acetylmuramic acid kinase" /protein_id="YP_001897961.1" /db_xref="GI:187927474" /db_xref="InterPro:IPR005338" /db_xref="GeneID:6287849" /translation="MSHPNPTALPADRYIGLMSGTSLDGVDGVLADFSGEHPAVLADA YVPFSPELRQRFLDLQHAGHDEIHREALAANALAMIYAECVARLLASTGLAAHDVQAI GAHGQTIRHQPGTHDGIGYTRQTQHPAVLAERTGIDVIADFRSRDIAAGGQGAPLVPA LHRALFGLPDAWRVVCNIGGIANLTVLPPQTSDTRDAVLGFDCGPGNALMDYWVHTHR DSPYDADGAWARSGRVGEALLERLKAEPFFAAPPPKSTGRDLFNPAWLQQALGDALNT ARPEDVQATLLALTADTITDAVRAHAPQAASLLVCGGGARNGALMARIGQQLPGVRVA PTDAFGVPAHQVEALAFAWLARQCVLRAHGNLHTATGASGARVLGAIYPA" gene 395884..397149 /locus_tag="Rpic_0372" /db_xref="GeneID:6287850" CDS 395884..397149 /locus_tag="Rpic_0372" /note="catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)" /codon_start=1 /transl_table=11 /product="tyrosyl-tRNA synthetase" /protein_id="YP_001897962.1" /db_xref="GI:187927475" /db_xref="InterPro:IPR000253" /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR002305" /db_xref="InterPro:IPR002307" /db_xref="InterPro:IPR002942" /db_xref="GeneID:6287850" /translation="MTASATPAASDNATPGTLKYPVTPEVAHAMEVSLRGCDELLIAA EWEQKLAKSAATGVPLRIKLGLDPTAPDIHIGHTVVLNKMRQLQDLGHQVIFLIGDFT STIGDPSGRNATRPPLTREQIEANAQTYYRQASMVLDPSKTEIRYNSEWCDPLGARGI IQLAAKYTVARMMERDDFTKRYKAGVPISVHEFLYPLMQGYDSVALKSDLELGGTDQK FNLLVGRELQKEYGQEPQCILTMPLLVGLDGVEKMSKSKGNYVGISEAPNEMFGKLMS ISDDLMWTYYTLLSFRPLAEIDLMKQEIALGRNPRDCKVMLAQEIVARFHSQADAERA LEDFNHRARGGVPDDIPQIELSGAPLGIAQLLKQAGLCPSTSDANRNIEQGGVKIDGT VISDKGLKVDAGTFVMQVGKRRFARVVLK" gene 397146..397658 /locus_tag="Rpic_0373" /db_xref="GeneID:6287851" CDS 397146..397658 /locus_tag="Rpic_0373" /note="hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine" /codon_start=1 /transl_table=11 /product="D-tyrosyl-tRNA(Tyr) deacylase" /protein_id="YP_001897963.1" /db_xref="GI:187927476" /db_xref="InterPro:IPR003732" /db_xref="GeneID:6287851" /translation="MIGLIQRVSEAAVRVDGRVVGEIGPGLLALVCAERGDTAAEADR LLEKLLNYRVFSDAQGKMNLPVRNIDGNGQAGGLLVVSQFTLAADTKSGTRPSFTPAA APEDGRRLYEHFVARARAQHPIVATGEFGADMKVSLVNDGPVTFWLQIAPQAAASVAK TAAPEAAKSV" gene 397678..398358 /locus_tag="Rpic_0374" /db_xref="GeneID:6289420" CDS 397678..398358 /locus_tag="Rpic_0374" /note="PFAM: Phosphoglycerate mutase; KEGG: rso:RSc0499 putative phosphoglycerate mutase 2 protein" /codon_start=1 /transl_table=11 /product="Phosphoglycerate mutase" /protein_id="YP_001897964.1" /db_xref="GI:187927477" /db_xref="InterPro:IPR001345" /db_xref="InterPro:IPR013078" /db_xref="GeneID:6289420" /translation="MPRAAAIPLPMLQITHIVLIRHGETDWNRERRLQGQLDVPLNTQ GLEQAAQLGKALARERFDAVYASDLSRARQTARALADEVGVPVRDDAGLRERCYGQFE GLTYAEVAARHPDDFDAWQNRVPEFAPPGGETLTEFHERAVETALRLIRRHPGERIAL VSHGGVLDCLYRHANAMTLTEPRQHELRNASINRLSSDGHQLTVLQWGDVAHLDLLVL DEVDRRVP" gene complement(398355..399071) /locus_tag="Rpic_0375" /db_xref="GeneID:6289421" CDS complement(398355..399071) /locus_tag="Rpic_0375" /note="TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: reh:H16_A0494 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897965.1" /db_xref="GI:187927478" /db_xref="InterPro:IPR003744" /db_xref="GeneID:6289421" /translation="MSAAPHHPNRTFRYYDFIMAAFVTVLLCSNLIGASKAAQVTLPV LGSVTFGAGVLFFPISYIFGDILTEVYGYGRDRRVVWAGFAALIFASFMSLVVLALPV APFMAGYQRSLNDVFGNTPRIVAGSLIAFWCGSFANSYTLAKMKIATEGKWLWTRIVG STVVGEAVDSSLFYVIAFYGIWPHEQVLRVAIAQYILKTGWEIVATPLTYRVVAFLKR AENEDYYDRDTNFTPFRLKV" sig_peptide complement(398355..398468) /locus_tag="Rpic_0375" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.732) with cleavage site probability 0.649 at residue 38" gene complement(399089..400162) /gene="ruvB" /locus_tag="Rpic_0376" /db_xref="GeneID:6289422" CDS complement(399089..400162) /gene="ruvB" /locus_tag="Rpic_0376" /note="promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration" /codon_start=1 /transl_table=11 /product="Holliday junction DNA helicase RuvB" /protein_id="YP_001897966.1" /db_xref="GI:187927479" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="InterPro:IPR004605" /db_xref="InterPro:IPR008823" /db_xref="InterPro:IPR008824" /db_xref="InterPro:IPR011704" /db_xref="GeneID:6289422" /translation="MIETDKLAAKAVSAERIISASPASPNEEAFERALRPKLLDEYVG QEKVRGQLDIFMTAAKNRSEALDHVLLFGPPGLGKTTLAHIIAREMGVNLRQTSGPVL ERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVK LDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPAELAKIVTRSSGLLNAHIVDE GALEIAKRSRGTPRIANRLLRRVRDFAEVKADGIITREVADAALAMLDVDAVGFDLMD RKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQGYLQRTPRGRVATAS AYQHFGLGAPKSGPVRDLWDDNQ" gene complement(400226..400807) /gene="ruvA" /locus_tag="Rpic_0377" /db_xref="GeneID:6289423" CDS complement(400226..400807) /gene="ruvA" /locus_tag="Rpic_0377" /note="plays an essential role in ATP-dependent branch migration of the Holliday junction" /codon_start=1 /transl_table=11 /product="Holliday junction DNA helicase RuvA" /protein_id="YP_001897967.1" /db_xref="GI:187927480" /db_xref="InterPro:IPR000085" /db_xref="InterPro:IPR003583" /db_xref="InterPro:IPR011114" /db_xref="InterPro:IPR013849" /db_xref="InterPro:IPR013850" /db_xref="GeneID:6289423" /translation="MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEK VVLLTQQIVREDAHLLYGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAV TLQEAGRLTRIPGIGKKTAERLLLELKGKLGADLGTVPGGPAVSDDAVDVLNALLALG YSDKEAALAIKQVPAGTGVSEGIKLALKALSKG" gene complement(400908..402047) /locus_tag="Rpic_0378" /db_xref="GeneID:6289675" CDS complement(400908..402047) /locus_tag="Rpic_0378" /note="PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rso:RSc0502 putative glycerophosphoryl diester phosphodiesterase, periplasmic precursor protein" /codon_start=1 /transl_table=11 /product="glycerophosphoryl diester phosphodiesterase" /protein_id="YP_001897968.1" /db_xref="GI:187927481" /db_xref="InterPro:IPR004129" /db_xref="GeneID:6289675" /translation="MPRRLILPSLLILSTSVALYACRLEYHHGSGGGGNTTPIATIQV IGHRGASALRPEHTLASYQKAIDDGADIIEPDLVSTKDGVLVARHENEISGTTNVADV AAFAGRKTTKTIDGQSVTGWFTEDFTLGELKTLRARERIPNIRPDNVAYNDQFDIPTL DEIIALARDQSAKLGRNIGIYPETKHPTYFQSIGLPLEDRLIDGLRRDAFTASRTTVY IQSFEVANLKAIRNKIGGSQPNWKLVQLMGTSGRQPYDFVVAKDSRTFGDMMTSQGMR DIAAYANGVGPDKSSIMGLDANGKLTDPTDLIRNAHNAGLVVHPYTFRPENTFLPPSL RSGADNTRNVNGSITEIQAFLRAGVDGFFTDDPAVGRQAVSTFKR" sig_peptide complement(400908..400973) /locus_tag="Rpic_0378" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.988 at residue 22" gene complement(402126..402671) /gene="ruvC" /locus_tag="Rpic_0379" /db_xref="GeneID:6289676" CDS complement(402126..402671) /gene="ruvC" /locus_tag="Rpic_0379" /EC_number="3.1.22.4" /note="endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity" /codon_start=1 /transl_table=11 /product="Holliday junction resolvase" /protein_id="YP_001897969.1" /db_xref="GI:187927482" /db_xref="InterPro:IPR002176" /db_xref="GeneID:6289676" /translation="MRILGIDPGLRTTGFGVLERHGHKLVYVASGTIKSNGNADLPSR LKTLYDGVSELVSTYRPDCASIEKVFVNVNPQSTLLLGQARGAVICGLMSGNLPVFEY TALQLKQAVVGYGRANKDQVQEMVVRLLNLEGKPGADASDALGVAICHAHGGETLAAM AGLAPQLAQKGLRVRRGRLVG" gene complement(402754..404328) /gene="purH" /locus_tag="Rpic_0380" /db_xref="GeneID:6289677" CDS complement(402754..404328) /gene="purH" /locus_tag="Rpic_0380" /EC_number="2.1.2.3" /note="involved in de novo purine biosynthesis" /codon_start=1 /transl_table=11 /product="bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase" /protein_id="YP_001897970.1" /db_xref="GI:187927483" /db_xref="InterPro:IPR002695" /db_xref="InterPro:IPR011607" /db_xref="InterPro:IPR013982" /db_xref="GeneID:6289677" /translation="MIQQALLSVSDKTGIVDFARALHERGVKLLSTGGTAKLLAESSL PVTEVADYTGFPEMLDGRVKTLHPKVHGGILARRDLPEHMAALSEHSIPTIDLLVVNL YPFQQTVAKDECSLADAIENIDIGGPTMLRSAAKNHRDVTVIVDPADYATVLAEMQAN NNTVGYETNFMLAKKVFAHTAQYDGAITNYLTSLGADKSHSTRSAYPQTLNLAFDKVQ EMRYGENPHQSAAFYRDLKAVDGALANYKQLQGKELSYNNIADADAAWECVKSFDAAH GAACVIIKHANPCGVAIGGTAQEAYEKAFKTDSTSAFGGIIAFNVPLDEAAAQVVAKQ FVEVLIAPGFSEGARAVFAAKQNVRVLEIPLGKGVNAYDFKRVGGGLLVQSPDAKNVQ PSELRVVTKRHPTPKEMDDLMFAWRVAKFVKSNAIVFCGGGMTLGVGAGQMSRVDSAR IASIKAQNAGLTLAGSAVASDAFFPFRDGLDVVVDAGASCVIQPGGSVRDDEVIAAAD ERNVAMIFTGTRHFRH" gene complement(404425..404658) /locus_tag="Rpic_0381" /db_xref="GeneID:6289678" CDS complement(404425..404658) /locus_tag="Rpic_0381" /note="PFAM: helix-turn-helix Fis-type; KEGG: rso:RSc0505 DNA-binding protein fis" /codon_start=1 /transl_table=11 /product="DNA-binding protein Fis" /protein_id="YP_001897971.1" /db_xref="GI:187927484" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR005412" /db_xref="GeneID:6289678" /translation="MSRNPIERCIRDSLDAYYRDLDGENPSNVYDMVLQAIERPLLET VMEWASNNQSQAADYLGINRNTLRKKLQQHGLI" gene complement(404655..405722) /locus_tag="Rpic_0382" /db_xref="GeneID:6288813" CDS complement(404655..405722) /locus_tag="Rpic_0382" /note="TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: rso:RSc0506 probable NifR3-like protein" /codon_start=1 /transl_table=11 /product="TIM-barrel protein, nifR3 family" /protein_id="YP_001897972.1" /db_xref="GI:187927485" /db_xref="InterPro:IPR001269" /db_xref="InterPro:IPR004652" /db_xref="GeneID:6288813" /translation="MQIGPHTLRNNLFVAPMAGVTDRPFRQLCKRLGAGYAVSEMVAS NAQLWKSEKTMRRANHTGEVEPIAVQIAGAEPMMMAEAARYNVDRGAQIIDINMGCPA KKVCNVAAGSALLQNEPLVQRIVEAVVGAVGDRVPVTLKIRTGWDREHRNALSVARIA QDAGISMLTVHGRTRADLYHGEAEYDTIAAVKASVRIPVVANGDITTPAKAKHVLAVT GADAIMIGRAAQGRPWLFREIEHFLQTGTLLPAPEVEEIRGIMNAHLEEHYAFYGEYT GVRTARKHIAWYTRGLAGANLFRHRMNTIEDTAAQLAAVNAFFDEQRALSDRLVYEDQ ATGGDHPRTGNNDNNKELLAA" gene complement(405918..407201) /locus_tag="Rpic_0383" /db_xref="GeneID:6288814" CDS complement(405918..407201) /locus_tag="Rpic_0383" /note="PFAM: FAD dependent oxidoreductase; KEGG: rso:RSc0507 probable amino acid dehydrogenase transmembrane protein" /codon_start=1 /transl_table=11 /product="FAD dependent oxidoreductase" /protein_id="YP_001897973.1" /db_xref="GI:187927486" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR016160" /db_xref="GeneID:6288814" /translation="MACAEVGAAGDRQQITVVGAGIVGTACALQLQRDGHQVTLLDQA GIGEGCSFGNAGCLSVASVVPMALPGMLKQVPKWLADPMGPLTVRWHYLPRALPWLLQ WVFAGNETQARATAQPLASLFSATFPGYRNLLDAAQYDGLIRQTGHLYVWRTLARSSG DVLAQSIRDATGVRSQALSAGEARELEPALAADIQSGLLLPDNGFTVNPERLVKTLAA NFAAAGGTFLRRKVLDVEFGRSDYGGPTRLHTDCGTLPVSKLVLCAGAWSMRLGAKLT SIRIPLNTERGYHATLRAPSVQPSRPIMDCERKFIATPMEGGLRIAGTVEIGGLDAAP DYRRARILMRQGQQLFPGLGFTDDSQWMGHRPSLPDSLPVIDRSERYRNVFFAFGHGH LGMTGAPGTARLIADLVSERTPFIDGRPYGLQRFR" gene complement(407205..408440) /locus_tag="Rpic_0384" /db_xref="GeneID:6288815" CDS complement(407205..408440) /locus_tag="Rpic_0384" /note="TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase FAD-binding; KEGG: rso:RSc0508 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897974.1" /db_xref="GI:187927487" /db_xref="InterPro:IPR002938" /db_xref="InterPro:IPR003042" /db_xref="InterPro:IPR010971" /db_xref="InterPro:IPR011295" /db_xref="GeneID:6288815" /translation="MTDSITASSAAPDFDVAIVGAGPVGLALANWLLRDTDWRIALFD ARDAEAAARDPRALALSHGSRVLLQEIGGWPTRATPITHIHVSQRGHFGQAHIRREDY DVPALGHVVQYGDLSAALNAALDTQMERHPGRLTRYDHTPVERVEQLPRADGTVAPAR VRALREGRHPLAIETEVVIQAEGGLFDDARKQQRGIAQARRRDYGQTAIVAHVRCSAP LEGWAWERFTPEGPLALLPQDDAQGPGYALVWCCAPDEARRRAALPDDAFLAELGAAF GERMGRFTHASPRHTFALGLHAQRIPVDRRVAAIGNAAQTIHPVAGQGFNLGLRDAFE MARALRDGATAATLARFARERAFDRAVTIGLTDLLPRAFAVPGRSFGHLRGAALTLLE CLPPLKHGLARQMMFGQRG" gene complement(408437..409816) /locus_tag="Rpic_0385" /db_xref="GeneID:6288816" CDS complement(408437..409816) /locus_tag="Rpic_0385" /note="PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: rso:RSc0509 probable Xaa-Pro aminopeptidase (aminopeptidase P II) protein" /codon_start=1 /transl_table=11 /product="peptidase M24" /protein_id="YP_001897975.1" /db_xref="GI:187927488" /db_xref="InterPro:IPR000994" /db_xref="InterPro:IPR001131" /db_xref="InterPro:IPR007865" /db_xref="GeneID:6288816" /translation="MSATELAFLQTYRQRRERIVQWLRAAGGGVAIVPTAPEAMRNRD SDYPYRHDSYFYYLTGFTEPEAVLAIVVPAGSAPARSVLFCRPKHEEREIWDGFRFGP EAAKDAFGLDEAHSVEEIDATLPKLLANAAAVACPLAESSAFDRRMRRWLDAVRMQGR AGVSSPHQALDVRAILDEMRLFKDASELDIMRRAGRISAGAHVRAMQASRAGLREYHL EAELLYEFRRHGAQSVAYNSIVATGPNACVLHYRAGNAELRDGDLCLIDAGCELDGYA SDITRTFPVNGRFTGPQRELYALVVAAQEAALAETRPGVPYNVPHDAATRVLAQGMLD TGLLDADKVGTLDDVIAGGQYRQFYMHRTGHWLGMDVHDVGEYRTPGTAAPAEGERPW RPLEAGMVLTVEPGIYVRPAPGVPEQYWHIGIRIEDDAIVTPEGCEIITRDVPVAPDE IELVMRGQA" gene 410043..412100 /locus_tag="Rpic_0386" /db_xref="GeneID:6289377" CDS 410043..412100 /locus_tag="Rpic_0386" /note="TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; KEGG: rso:RSc0510 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="diguanylate cyclase/phosphodiesterase" /protein_id="YP_001897976.1" /db_xref="GI:187927489" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR005330" /db_xref="GeneID:6289377" /translation="MLASSYNPLLVLLSLFVAILASYTALDMAGRVVTAQGRAALWWL IGGASAMGLGIWSMHFVGMLALNLPIPVGYDVGITLASLAIGIGASTFALWLVSRREL PWPRLVGGALLMGAGVAGMHYTGMAALRMNPGIQYNPGRFGVSVVIAVLASGVALWIA FRLRRQSRRVRALRAGSAVVMGVAIVGMHYTGMSAAAFPLGSVCGAAHTGASAEWLAL VIIIVTLAVLAIALIISVLDLRMEARTALLANSLAAANKELAYLALHDNLTKLSNRVL LEDRLTQAIRTAEREKHRFALMFMDLDGFKAVNDVYGHHVGDLLLIDVAQRIGARVRQ QDTVARVGGDEFVVLAYVDDPEDAGTLANALLEVVREPFMAGGHELRVSTSIGIAIYP GDGGNQHDLLTNADAAMYHAKGLGRNAYSFFEPSMNADVHQQLQLVQDLRRAVERHEL VLHYQPKFNAPNGPIMGVEALVRWQHPQRGLVPADEFIPLAEKTGLIVPLGAWVLDEA CRQMAQWQREGHSGWSVAVNLSALQFGHAALIDSVRDTLARHALDPRSLTLEITESTA MRDVDASLQILQRLDAMGVRISIDDFGTGYSSLLYLKRLPASELKIDRGFVRDLAHDT EDAAIVSAIVALGQTLNLRIVAEGVETAEQQAFLTRLGCHSLQGYLLGRPMTAESLSA AMA" sig_peptide 410043..410117 /locus_tag="Rpic_0386" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.949) with cleavage site probability 0.357 at residue 25" gene complement(412105..412797) /locus_tag="Rpic_0387" /db_xref="GeneID:6289378" CDS complement(412105..412797) /locus_tag="Rpic_0387" /note="PFAM: Nucleotidyl transferase; KEGG: rso:RSc0511 putative mannose-1-phosphate guanyltransferase-related protein" /codon_start=1 /transl_table=11 /product="Nucleotidyl transferase" /protein_id="YP_001897977.1" /db_xref="GI:187927490" /db_xref="InterPro:IPR005835" /db_xref="GeneID:6289378" /translation="MIFAAGRGDRMRPLTDHTPKPLLTVGGKPLIVWQIERLAAAGVR DIVINHAWLGAQIEAALGDGSAWGVRLAYSPEGQALETAGGVAQAMSLLHAGEGHSVF IAVSGDVFCDYDYALLRDRAPAMAAQAAPSMHLVMVPNPPYHLRGDFALDNEGVLHAD GTERLTFGNIGLYDTRLFASIAPGTRLAMTPLYHQAIAEGRATGERFDGRWENVGTPA QLAALDAELAVR" gene complement(412815..413141) /locus_tag="Rpic_0388" /db_xref="GeneID:6289379" CDS complement(412815..413141) /locus_tag="Rpic_0388" /note="PFAM: branched-chain amino acid transport; KEGG: rso:RSc0512 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="branched-chain amino acid transport" /protein_id="YP_001897978.1" /db_xref="GI:187927491" /db_xref="InterPro:IPR008407" /db_xref="GeneID:6289379" /translation="MKALILFGVLLIAGAATYLIRLSFIALEGRMNLPTWFRNSLPYV PAAMLTALIAPDLLMRDGALAVSVDNPRLLAGIVAIVIARVTKSAMWTIVGGMAVLLI LMKVMA" gene complement(413138..413866) /locus_tag="Rpic_0389" /db_xref="GeneID:6289380" CDS complement(413138..413866) /locus_tag="Rpic_0389" /note="PFAM: AzlC family protein; KEGG: rso:RSc0513 hypothetical protein" /codon_start=1 /transl_table=11 /product="AzlC family protein" /protein_id="YP_001897979.1" /db_xref="GI:187927492" /db_xref="InterPro:IPR011606" /db_xref="GeneID:6289380" /translation="MVSPRAVEFRAGMLALAPMLLGVVPFGLIYGVLATSAGMPAWLA VAMSAIVFGGASQMILVQLWAGGAPALVIAATVSMVNLRHALYSASIAPALAHLPRRW KWLIAYLLTDEAFAAMNRRVVTAQAGSAEAAYRHWYFLGAGVALWSSWQASTIVGVVL GAQVPTSWPLDFFLPLTFIAIVVPALRTRAQLAAALAGAALAVAWTGWPHKLGLMSAA CVGIAVGALVERLLARPSDKGAAA" gene complement(413866..414939) /locus_tag="Rpic_0390" /db_xref="GeneID:6287780" CDS complement(413866..414939) /locus_tag="Rpic_0390" /note="PFAM: aminoglycoside phosphotransferase; KEGG: rso:RSc0514 hypothetical protein" /codon_start=1 /transl_table=11 /product="aminoglycoside phosphotransferase" /protein_id="YP_001897980.1" /db_xref="GI:187927493" /db_xref="InterPro:IPR002575" /db_xref="GeneID:6287780" /translation="MASTPGAAAGATDARLSQLRDWLGTLPAAHGLRIDTLQPASADA SFRRYFRLDSAVSGKPGTLVVMDAPPPQEDCRPFVHVAGLLNGAGVRAPLVLEQDLAQ GFLLLTDLGPQTYLQSLRERDFDLAYANTLFRPAIHTLVRWQLASREGELPPYDEALL RRELSLFPDWYVDRHLQRPLDATQRESLDKVFKLLVDSALAQPRVYVHRDYMPRNLMI NAADPSQPGVLDFQDAVYGPITYDAASLLRDAFLSWDEEQELDWAVRYWEAARAAKLP VDEDFGEFYRALEWMGAQRHLKVAGIFARLCYRDGKTGYVEDTPRFIAYLRRVCSRYN ALAPLARLLDQLEDRAQQIGYTF" gene 415116..417557 /locus_tag="Rpic_0391" /db_xref="GeneID:6287781" CDS 415116..417557 /locus_tag="Rpic_0391" /note="PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: rso:RSc0515 probable organic solvent tolerance transmembrane protein" /codon_start=1 /transl_table=11 /product="Organic solvent tolerance protein" /protein_id="YP_001897981.1" /db_xref="GI:187927494" /db_xref="InterPro:IPR005653" /db_xref="InterPro:IPR007543" /db_xref="GeneID:6287781" /translation="MTEPNRARKNRQRAAVAAPDQRPADLATIRRGTLALRPLVFAVA GVWTATSAAQSTGTTQATAPAVTPASSVTALATSGPTTPGGSPLVPKMAEPVQRPDNT VPTFTAADKMDGRTNEDIHLRGNGELRRNGSVLKGDTLDYNQDTDVATATGNVRLFKG GTLVTGPDAKLKITANEGTISTPSYEFHSNGGHGTADRIDFVDKDNSRITRGTYTTCS PDNVDWYFSASRIDIDSDRQVGTGRNGVLHFFGVPVFAAPVMDFPLNDDRRSGFLAPV FGYNSRSGADVTLPYYFNIAPNRDLTLYPRLLSQRGLQLGAEYRYLDTSYSGVLRGEF LPDDREAGRNRWSISAVHTQRLAPGLTGYINYNKVSDNTYPDDLGRSIVTATQRQYIQ EGGVSYSFGDWVALARVQKFQTLSTATTPLAAPYERLPQLSLTYNKYDVGGFDINFLT DYTRFSIPTANTVQGERLFMQPTISYPIVRPGWYVTPKFILNTTAYRLDRPAGDTQDT QINRTLPTFSLDSGMTFERDAPLVSKLFGVSYIQTLEPRVFYVYTPYRDQSQIPLFDT GQSDYNLGQIFTENPYTGYDRIADNNKVTAGVTTRFIEAESGIERLRATIAQRVDLDG QRVTLAGAAPTSVRRYSDLLGATTIQMFRGIFFDTNLQYNQDLDRIMRSTVAFSWKPE ANKVINLGYRYYRQDANTGQLPLEQADISTQWPITRRLYGLGRIGYDLDARKPSDVLL GLEYVADCWVGRLAVQRYSNAVSGYTTHIFAQIEFKGLSKVGNNPIDVIRLNVPGYQP VNAQPITPSVLDQYE" gene 417550..419052 /locus_tag="Rpic_0392" /db_xref="GeneID:6287782" CDS 417550..419052 /locus_tag="Rpic_0392" /note="PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: rso:RSc0516 probable peptidyl-prolyl cis-trans isomerase (rotamase C) protein" /codon_start=1 /transl_table=11 /product="SurA domain" /protein_id="YP_001897982.1" /db_xref="GI:187927495" /db_xref="InterPro:IPR000297" /db_xref="InterPro:IPR015391" /db_xref="GeneID:6287782" /translation="MNNDIMAFQSTAFATRVAPLGRLRVATGVLLALLAGTTLSPAVH AQQAQSAKKSAPVRGIFANPGSSPSQPLLQGTLPEPTAPGAPRSQLVDEVVAVVNTDV ITRRELLNRADLVERTFRAQNRPLPPRADLLGEVLEQLILERVQAQTAKESGIRVSDA DVDRAVESVAQRNNLSVPQLKSKLKDAGMTYDKYRDDLRQEILLARLREREVDSKVQV YDGEIDNYLAQQGGGTAPAGEQQYNVAQILVPVAEGATDAEKAAARKKAEGLLKQAQG GADFAKLARDNSGAQDAAQGGELGLRPIGRLPAVFANAVVDMKAGQVASQVVESPAGY HVIKLLEKRASSTAIAAKVQQTQVRHILIKTGPTMSADDARRQLVGLRDRIVHGYDFG DAARRYSQDGSAGAGGELGWVSPGQLVPEFEQAMNQLKPGDVSQPVQSQFGVHLIQVE GRREAEVSGDRERDYARSVIREQKVQAAYEDWLRELRDSAHVEYRVNRQQ" sig_peptide 417550..417687 /locus_tag="Rpic_0392" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.997 at residue 46" gene 419141..420157 /gene="pdxA" /locus_tag="Rpic_0393" /db_xref="GeneID:6287783" CDS 419141..420157 /gene="pdxA" /locus_tag="Rpic_0393" /EC_number="1.1.1.262" /note="catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)" /codon_start=1 /transl_table=11 /product="4-hydroxythreonine-4-phosphate dehydrogenase" /protein_id="YP_001897983.1" /db_xref="GI:187927496" /db_xref="InterPro:IPR005255" /db_xref="GeneID:6287783" /translation="MLNIAITTGEPAGIGPDITVAALLHLARQALPRYADVQWHVIGD AALLQARADAIAQGDFWRVASTALTVVERPLGAPVRAGVLDAANGRYVLDLLDAAIDG CQIGTEDGVRYDAMVTAPVQKSTINDAGVPFTGHTEYLAERSRTPRVVMMLAGPQPAH DNAMLRVALATTHLPLREVPDAITPAVLDETLDIVQRDLRMRFGLNAPRILVTGLNPH AGESGHLGREEIEVIEPAIARARARGIDARGPYPADTLFQPRLLADADCVLAMYHDQG LAPLKYGTFGHGVNITLGLPFVRTSVDHGTALDLAGTGRAEFGSMIEAIDTAIAMARH TARS" gene 420190..421035 /gene="ksgA" /locus_tag="Rpic_0394" /db_xref="GeneID:6287804" CDS 420190..421035 /gene="ksgA" /locus_tag="Rpic_0394" /note="catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin" /codon_start=1 /transl_table=11 /product="dimethyladenosine transferase" /protein_id="YP_001897984.1" /db_xref="GI:187927497" /db_xref="InterPro:IPR001737" /db_xref="InterPro:IPR011530" /db_xref="GeneID:6287804" /translation="MARSTTGVHQGHQARKRFGQNFLVDDGVIHAIVAAIDPKPDDVL VEIGPGLGALTVPLMERVRTLQVVELDRDLVARLQQRFGDRLIVHAGDALAFDFGSLQ EAGRPLRIVGNLPYNISSPLLFHLATFADRVRDQHFMLQKEVVDRMVAAPGSKAFSRL SVMLQVRYYMELVLDVPPGSFNPPPKVDSAVVRMIPWPADKSPYAPVDLRALGTVVTM AFSQRRKVLRNTLGALRDVIDFEALGFDLGRRAEEVSVEDFVAVANALPANRIAGSAS DLSED" gene complement(421022..421927) /locus_tag="Rpic_0395" /db_xref="GeneID:6287805" CDS complement(421022..421927) /locus_tag="Rpic_0395" /note="PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc0519 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF6 transmembrane" /protein_id="YP_001897985.1" /db_xref="GI:187927498" /db_xref="InterPro:IPR000620" /db_xref="GeneID:6287805" /translation="MATATDAIRRPLDGTAIGLMVVLCMCWGFQQVAIKVAAHDVGPV MQAGVRSAIASVLVLAFALWRGTCLSVRDGTLAGGLMAGVLFGVEFLCIFIGLSYTTA SRMAVFLYTAPIFTALGLHFFVPGEHLRPRQWAGIGIAFAGIVLAFADGVLHPAAGPS TSLGDALGVVAGALWGATTIVVRASKLSEAPAAKTLLYQLAVSAVLLLLMAAGTGQAF TANLTPTALASLAYQSVLIAFASYLTWFWLLRRYLASRLSVFSFLTPLFGVAFGVLLL HEPVGLRFALAAALVLSGILLVNLR" gene complement(421911..422318) /locus_tag="Rpic_0396" /db_xref="GeneID:6287806" CDS complement(421911..422318) /locus_tag="Rpic_0396" /EC_number="4.4.1.5" /note="KEGG: rso:RSc0520 probable lactoylglutathione lyase (methylglyoxalase) protein; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase" /codon_start=1 /transl_table=11 /product="lactoylglutathione lyase" /protein_id="YP_001897986.1" /db_xref="GI:187927499" /db_xref="InterPro:IPR004360" /db_xref="InterPro:IPR004361" /db_xref="InterPro:IPR011588" /db_xref="GeneID:6287806" /translation="MRMLHTMLRVGDMQRSIDFYTKVLGMQLLRTSDNPEYKYSLAFV GYGPEASNTVIELTYNYGVSEYELGTAFGHLAIEVDDAAQACDQIRNAGGKVTREAGP VKGGSTIIAFVEDPDGYKIELIQARSMPDGNRH" gene complement(422438..423316) /locus_tag="Rpic_0397" /db_xref="GeneID:6287807" CDS complement(422438..423316) /locus_tag="Rpic_0397" /note="PFAM: protein of unknown function DUF45; KEGG: rso:RSc0521 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF45" /protein_id="YP_001897987.1" /db_xref="GI:187927500" /db_xref="InterPro:IPR002725" /db_xref="GeneID:6287807" /translation="MKLLRPPTSPTTADSVQLELPLLAPEASSPTQPPDAPLLAPPAL DFSTAPLGPHQRRLTLGERALIYNLKRSSRRTIGFVIDDRGLSITAPRWVTLAEIEHA IAEKQKWIFAKLAEWRTSAARRMLPTMEWQDGAGLPFLGKTITLKLESPIGALMFDAD TSMLHLGLPHTTTEQQIKDRVQGWLQTQARRLFGERLEVYAERLGVRHSAYALSSAAT RWGSCTADGKIRLNWRLVHFPLSLIDYVVAHELAHLKEMNHSPRFWDTVESIFPEFRE AREQLRSHPPEYLPAF" gene complement(423313..424065) /locus_tag="Rpic_0398" /db_xref="GeneID:6288501" CDS complement(423313..424065) /locus_tag="Rpic_0398" /note="PFAM: phospholipid/glycerol acyltransferase; KEGG: rso:RSc0522 putative acyltransferase transmembrane protein" /codon_start=1 /transl_table=11 /product="phospholipid/glycerol acyltransferase" /protein_id="YP_001897988.1" /db_xref="GI:187927501" /db_xref="InterPro:IPR002123" /db_xref="GeneID:6288501" /translation="MTFIRSLLYLIFLIVWTPIYAVACFIVFPFMNPARRFWMVSGWT KSAIWMARWLLGIRWQYQGWEHIEEAVATNKPVVLLSKHQSAWETMAYVATMPRPLCY VFKRELLYVPFFGWALGMLKMVHINRKDGANAFASVARQGKERMAEGAWVIMFPEGTR TRSGDPKPRYKSGGARFAVDTGAWVIPIAHNSGRVWPRNSFLKHPGLITLSVGPAIPT AGKTSDELNREVEAWIEAEMRRIDADSYREHA" sig_peptide complement(423313..423384) /locus_tag="Rpic_0398" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.704) with cleavage site probability 0.518 at residue 24" gene complement(424077..424655) /locus_tag="Rpic_0399" /db_xref="GeneID:6288502" CDS complement(424077..424655) /locus_tag="Rpic_0399" /note="Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate" /codon_start=1 /transl_table=11 /product="D,D-heptose 1,7-bisphosphate phosphatase" /protein_id="YP_001897989.1" /db_xref="GI:187927502" /db_xref="InterPro:IPR006543" /db_xref="InterPro:IPR006549" /db_xref="InterPro:IPR013954" /db_xref="GeneID:6288502" /translation="MPHVPKLVILDRDGVINRDSDQFIKSPDEWIALEGSLEAIAELN QAGYQVVVATNQSGIGRGLFEAAALNAMHEKMYKALATYGGRVDAVFFCPHTAADACE CRKPKSGMLREIARRFDVDLTGVPVVGDSLRDLQAGVEVGAVPHLVLTGKGTKTRDAG DLPPGTQIHEDLRAFARALLSPAPQGTPTRAP" gene complement(424687..426780) /gene="glyS" /locus_tag="Rpic_0400" /db_xref="GeneID:6288503" CDS complement(424687..426780) /gene="glyS" /locus_tag="Rpic_0400" /EC_number="6.1.1.14" /note="glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA" /codon_start=1 /transl_table=11 /product="glycyl-tRNA synthetase subunit beta" /protein_id="YP_001897990.1" /db_xref="GI:187927503" /db_xref="InterPro:IPR002311" /db_xref="InterPro:IPR006194" /db_xref="InterPro:IPR008909" /db_xref="InterPro:IPR015944" /db_xref="GeneID:6288503" /translation="MSTLLIELLTEELPPKALARLGEAFARGLFDGLSAQGLLEEGAA VEGFATPRRLAASITGARRTAPDRELREKVLPVTIAFDAEGKPAAPLVKKLAALAKTV GVEVIAAESLERGPDGKAEALFYRYTARGAVLADGLQTALSQTIANLPIPKVMTYQRP NGENVQFVRPAHKLIALLDSEVIPVSAFGLQSGNVTLGHRFLSAGEIVIQDAASYAST LESQGKVIAGYGKRKEAIRAELLKTAGADTVVMPEALLDEVNALVEWPVVYPCHFEEA FLAVPQECLILTMQTNQKYFALTDAQGHLRNRFLIVSNIATDTPEAIIQGNERVVRPR LADARFFFEQDKKKPLADRVPLLSRVVYHNKIGTQLERVSRLQAIAGQLAEKLGADVA HASRGALLAKADLLTDMVGEFPELQGTMGTYYARHDGEPDDVALACSEHYQPRFAGDA LPSTATGTVVALADKLETLVGIWGIGLQPTGEKDPFALRRHALGILRMLIEKPLALTI DDALQIAAASFDGIAAVKPNLAAITDFLYDRLRGYLKDKGYSTNEVEAVVSQRPQRLD DIVARLEAVRAFAALPQAEALAAANKRITNILKKTDVAIGAVQPPLLKEDAERALHQS VVSAEPQVHDAFARGDFTTALKTLAGLREAVDTFFDGVMVMADDTALRDNRLALLAEL HGLMNRVADISKLAA" gene complement(426867..427526) /locus_tag="Rpic_0401" /db_xref="GeneID:6288504" CDS complement(426867..427526) /locus_tag="Rpic_0401" /note="KEGG: rso:RSc0525 hypothetical signal peptide protein" /codon_start=1 /transl_table=11 /product="conserved hypothetical signal peptide protein" /protein_id="YP_001897991.1" /db_xref="GI:187927504" /db_xref="GeneID:6288504" /translation="MTANRARRGLALLTAASIAALTLPASVAQAARHRTSKPASAEKV FVVPNTLTQLCVADSKPLQQALSAAWTPPPPSLDQWTSLVRTMACDLSGARDLGWHRV PLRTYATALRFPLTWVEWQGTGVKAQRRARVFRSAGQLPSRLEFNVSGTLQEVRYDAR RGLLSARFLRRDAAVPGTTPAPIAPPPPPGQCAGTQLQFQQQNGVWLLSGVEPVPGSP C" sig_peptide complement(426867..426959) /locus_tag="Rpic_0401" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.442 at residue 31" gene complement(427523..428509) /gene="glyQ" /locus_tag="Rpic_0402" /db_xref="GeneID:6287688" CDS complement(427523..428509) /gene="glyQ" /locus_tag="Rpic_0402" /EC_number="6.1.1.14" /note="glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA" /codon_start=1 /transl_table=11 /product="glycyl-tRNA synthetase subunit alpha" /protein_id="YP_001897992.1" /db_xref="GI:187927505" /db_xref="InterPro:IPR002310" /db_xref="InterPro:IPR006194" /db_xref="GeneID:6287688" /translation="MLTFQQLILKLQSYWDAQGCALLQPIDLEVGAGTSHVHTFLRAI GPEPWRAAYVQPSRRPKDGRYGENPNRLQHYYQYQVVLKPAPENILDLYLGSLEALGL DLKQNDVRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLDCKPVTGEITY GIERLAMYLQQVENIYDLVWTEWEEPGPNGPVKRRLTYGDVYHQNEVEQSTYNFEQAD TTVLFRRFAEHEAEAKRLMGVRAEGDAAAEGDAPVVQLALPAYEQVLKAGHTFNLLDA RGAISVTERAAYIGRIRNLSRLVAQAYYDSRERLGFPMCGTAAAAVKTTEAA" gene complement(428685..430196) /gene="lnt" /locus_tag="Rpic_0403" /db_xref="GeneID:6287689" CDS complement(428685..430196) /gene="lnt" /locus_tag="Rpic_0403" /note="Transfers the fatty acyl group on membrane lipoproteins" /codon_start=1 /transl_table=11 /product="apolipoprotein N-acyltransferase" /protein_id="YP_001897993.1" /db_xref="GI:187927506" /db_xref="InterPro:IPR003010" /db_xref="InterPro:IPR004563" /db_xref="GeneID:6287689" /translation="MPLARLRFAMPLAALLGVMHTLSFAPNHWWWLQILSLTGLAALV QRAARLREAAWVGYAFGLGWFLSGVWWLYISMHVYGDMPAWMGALAVLLFAGYLALHP ALAVWAWQWLTRRGRWSGTASALIFGAAWAVTEWLRGTVWTGFPWINGGYAHTDGPLA GYAPLVGVYGIVLIAAVLAGLLCVAAERRLHWLAGIAGALVLVAGWPLHGIAWTQPVG KPISVRLLQGNVPQDVKFQQTGIERSLELYTKMVTEKPAQLVVTPETAFPIMIQEMPQ EIALALRTYVDTTGSSVLFGAASEDSRVDYTNSVFGIGPQFQGVYRYNKHHLVPFGEF IPFGFHWFVNMMNMPLGDFRRGLPVQPPMAVADQRVAPNICYEDLFGEEIAASLRHAD QPATMLANVTNLAWFGDTIALDQHLQISRMRALETGRPMLRATNTGATAVVRPDGSVQ ARLPVFTLGTLQTDVQGTQGLTPFVRTGNAPALGLGALVLLVAFVRRRRASAD" gene complement(430261..431190) /locus_tag="Rpic_0404" /db_xref="GeneID:6287690" CDS complement(430261..431190) /locus_tag="Rpic_0404" /note="PFAM: CBS domain containing protein; transporter-associated region; KEGG: rso:RSc0528 hypothetical protein" /codon_start=1 /transl_table=11 /product="CBS domain containing protein" /protein_id="YP_001897994.1" /db_xref="GI:187927507" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR005170" /db_xref="GeneID:6287690" /translation="MLARCLTTRDRAMNDPYPSPKPADKPRTLLERLTDLISPEPESR AELLEILQDAHARSLIDADSLSMIEGVFQVSDLCARDIMIPRAQMDALNIADAPSEFI PFVQEAAHSRFPVYEGSRDNIIGILLAKDLLRFYTDEDFDVRDMLRPAVFIPESKRLN VLLRDFRVNRNHIAIVVDEYGGVAGLITIEDVLEQIVGDIEDEYDFDQEEDNILPTAD GHMRVRGLTEISQFNEAFGTHFSDEDVDTVGGLLSNHLGRVPHRGEKIVMGTLQFDVL RADARQVQVLLVRRLTTPAGGNATADTSGSHPA" gene complement(431317..432531) /locus_tag="Rpic_0405" /db_xref="GeneID:6287691" CDS complement(431317..432531) /locus_tag="Rpic_0405" /note="KEGG: pfa:PFD1175w Plasmodium falciparum trophozoite antigen r45-like protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897995.1" /db_xref="GI:187927508" /db_xref="InterPro:IPR002395" /db_xref="GeneID:6287691" /translation="MRQRFMDSIPWTTLLVGVGVGTALAVTPRIAHADHKQSCYAGIV VVFDGAWHPGAVVGCRTVNISDSNNVVGAEVNLMVAQGTIRPRVQAVVGSTSVQALIG GGYDFASSKALVGVGATGDHWLAGVDMEIAGRWTAYGGASTLGRYHSNSHPADPAPAA TTPTGNNDAPPPSGNNTPPSKPSPTPAPAPGASPSPGPTPAPTPSPGPSPSPTPSPSP TPSPTPTPAPTPTPSPSPVPSPCGSCHGGGHHHGHDHDHDHDHDHSGDHDHGGDRNHG GDHNHGGDGSHGGDHDHGGDGNHDHGGNSNHGGDRDHGGGGNHGGHHDHGGDGNHGGD HDHGGGGNHGGDHDHGGDGNHGGDHHHGGDDNHGGDHDHGGDGNHGGDHDHGGGGTHG GDHDRGGEGGHD" sig_peptide complement(431317..431418) /locus_tag="Rpic_0405" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.985) with cleavage site probability 0.501 at residue 34" gene complement(432904..433716) /locus_tag="Rpic_0406" /db_xref="GeneID:6289652" CDS complement(432904..433716) /locus_tag="Rpic_0406" /note="contains unknown N-terminal domain/putative metalloprotease C-terminal domain" /codon_start=1 /transl_table=11 /product="unkown domain/putative metalloprotease fusion protein" /protein_id="YP_001897996.1" /db_xref="GI:187927509" /db_xref="InterPro:IPR002036" /db_xref="GeneID:6289652" /translation="MAKAKTDTKAKTKKTQPAAAESFGPRVDVFDAQGKPRTVDASAL RIAFADGRSLILGLPNTVDGPITLVAEHADADMHAMLSLRPEHHDSITLRIETQPAEL ADSTEEAFDDDTAGAEMLTLDLTVQYGDELKAAARKALPKERDIEGWIAPALFADAQL NVRFVGEEEGRTLNRTYRGKDYATNVLTFSYAESAEDPVSADIVLCCTVVEKEAKEQK KPLLAHYAHLIVHGALHAQGYDHEDAADAKEMEGIETEILRDLGFADPYADR" gene complement(433729..434721) /locus_tag="Rpic_0407" /db_xref="GeneID:6289653" CDS complement(433729..434721) /locus_tag="Rpic_0407" /note="PFAM: PhoH family protein; KEGG: reh:H16_A0527 phosphate starvation-inducible protein PhoH,predicted ATPase" /codon_start=1 /transl_table=11 /product="PhoH family protein" /protein_id="YP_001897997.1" /db_xref="GI:187927510" /db_xref="InterPro:IPR003714" /db_xref="GeneID:6289653" /translation="MKPTIAEFTAPKNDNTRLQNLCGPLDENLRQIEQALDVTINRRG SKFTVRGANAQGAANALETFYNAARDPLSVDDIQLGLVETRQVAAHGAYLPESGTDEP DGNDLSPVLHTRRTDLHGRTPMQRAYLRNVLSHDLSFGIGPAGTGKTYLAVACAVDAL ERDAIKRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDKTQKMFER QMIEIAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVITGDTTQIDL PRGQKSGLIEAQHVLRDVRGVAMTRFTSVDVVRHPLVARIVEAYDEFHAQHKDA" gene complement(434743..436113) /locus_tag="Rpic_0408" /db_xref="GeneID:6289654" CDS complement(434743..436113) /locus_tag="Rpic_0408" /EC_number="1.3.1.74" /note="KEGG: rso:RSc0531 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB" /codon_start=1 /transl_table=11 /product="tRNA-i(6)A37 thiotransferase enzyme MiaB" /protein_id="YP_001897998.1" /db_xref="GI:187927511" /db_xref="InterPro:IPR002792" /db_xref="InterPro:IPR005839" /db_xref="InterPro:IPR006463" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="InterPro:IPR013848" /db_xref="GeneID:6289654" /translation="MKKVFIKTYGCQMNEYDSDKMSDVLNAAEGLVPTDTPEDADVIL FNTCSVREKAQEKVFSELGRVKALKALKPDLVVGVGGCVASQEGASIVARAPYVDVVF GPQTLHRLPDLIAARRRTGRSQVDVSFPEIEKFDHLPPARVDGASAYVSIMEGCSKYC SYCVVPYTRGEEVSRPFDDVLAEVAGLAEQGVREVTLLGQNVNAYIGKMGDTSERADF ALLLEYVAEIPGIERIRYTTSHPKEFSSRLIEAYATNPKLVDHLHLPVQHGSDRILMA MKRGYTVLEYKSSIRKLRAIRPNISIATDFIVGFPGETDADFAKTMDLIHEIGYDTSF SFIYSPRPGTPAANLHDDTPQAVKLERLKHLQATIEENVARISQGMVGSVQRILVEGP SRKDPTELHGRTENNRVVNFALPDLPQVRREQLIGQMLDVRIVHAFPHSLRGEVAEER MASAAH" gene complement(436166..436579) /locus_tag="Rpic_0409" /db_xref="GeneID:6289655" CDS complement(436166..436579) /locus_tag="Rpic_0409" /note="KEGG: rso:RSc0532 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001897999.1" /db_xref="GI:187927512" /db_xref="GeneID:6289655" /translation="MRTRRQVLALAVAAVAAASAPLLSHAQVLRNIPATAPAAQLTIN SANGGTLSTGSTGIVRILLLGFGSSSADIRFAPGVRILSLDGRLLPTSSVVGQTFKVR YQLDLYQQLLTAWVVSDDDYKAAVAAQSQAQAQSQ" sig_peptide complement(436166..436246) /locus_tag="Rpic_0409" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.890 at residue 27" gene complement(436670..437668) /locus_tag="Rpic_0410" /db_xref="GeneID:6289711" CDS complement(436670..437668) /locus_tag="Rpic_0410" /note="KEGG: rso:RSc0533 putative transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001898000.1" /db_xref="GI:187927513" /db_xref="InterPro:IPR000759" /db_xref="GeneID:6289711" /translation="MSQPSIAIVGAGIAGVACANALAAEGIATTVYERAGGVGGRLAT TVLPESAPAYAFDHGAQSFNVRSEVFRRAVDAAGRQGSVLPWPARWGHRTIDALQADS RDEARYVGLPGMGALVRSLAAPLDVRFGHAVTRVAHDGRRWTIERNGTDAAHADFLAL ALPAPELSALFHGATPASLQEAIAPVHYAPCWALMMGFAQPLGLPYDGIRIDDDVLAW AARDNSKPGRVMVDESWVVHASPGWSAAHAQDTPEQAVHAMHARFAEAFPGTPQPDVM AAHLWPHALVEQSAGVPCHWDAAARLGACGDWCEGPRVEAAFLSGIALAAKIAEAL" sig_peptide complement(436670..436741) /locus_tag="Rpic_0410" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.993 at residue 24" gene complement(437812..438738) /locus_tag="Rpic_0411" /db_xref="GeneID:6289712" CDS complement(437812..438738) /locus_tag="Rpic_0411" /note="PFAM: OmpW family protein; KEGG: bmn:BMA10247_3516 outer membrane protein, OmpW family" /codon_start=1 /transl_table=11 /product="OmpW family protein" /protein_id="YP_001898001.1" /db_xref="GI:187927514" /db_xref="InterPro:IPR005618" /db_xref="GeneID:6289712" /translation="MNRTARRLAAAIACAAASTLAAPLAHAQSTAEANVAASASNGSG MSSGGGGGFSGFMDNYVWGRNVMALGWFYIRPMDSATPLTTTTSALGLGTYQSPGTDV KVSNANTLSLTFTHFFNDNIAGTFVGGVPPKFNLYGSGNVIAPVPVVGPLTLVNLGLP QNNPVATVREWSPAIVAQYYFGTKESKLRPFVGAGVSYNFFTNLKLNQNFVNGLQNLG QVLQLGMGQVPTGPAKVTAETSSSWTPVANVGVSYEFAKNWTAIGTVSYLPLKTTSTI TIRSQQGQVLAVNKTDIKVDPIVFGLAVGYKF" sig_peptide complement(437812..437895) /locus_tag="Rpic_0411" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 at residue 28" gene complement(438950..439867) /locus_tag="Rpic_0412" /db_xref="GeneID:6289713" CDS complement(438950..439867) /locus_tag="Rpic_0412" /note="KEGG: rso:RSc0534 probable lipoprotein transmembrane" /codon_start=1 /transl_table=11 /product="putative lipoprotein transmembrane" /protein_id="YP_001898002.1" /db_xref="GI:187927515" /db_xref="GeneID:6289713" /translation="MHLRTLALATVLAGAAHAWGQPAAPDASAPAAAAQTAAPTAASQ SAAIGSFAAMDIAKQTAWLGSQVNANAFAGWSDEDVLAMAHAMKPETLVRWLKAEVAK LPEYEYRMRRQERVKDQWQSQAALMLIRYRNAPRQVYARWLRGGAHAGQEIIYDETVR KNEMYGHLGGLVGFVAIWSALDGSLARSQSNHTARELGLQFIVDTVERDGRAHVAAGG SGKFNEAKMVTEDGERMLRLTWDTPSGPPTFYAKRVRLYFDLKNPWVRIEEAWDESGN QLEKIVIESVTRKTWNDQTFNPKNPEYKF" sig_peptide complement(438950..439006) /locus_tag="Rpic_0412" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.751 at residue 19" gene complement(439888..441627) /locus_tag="Rpic_0413" /db_xref="GeneID:6289714" CDS complement(439888..441627) /locus_tag="Rpic_0413" /note="PFAM: AMP-dependent synthetase and ligase; KEGG: bxe:Bxe_A2778 putative long chain fatty-acid CoA ligase(long-chain acyl-CoA synthetase)" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_001898003.1" /db_xref="GI:187927516" /db_xref="InterPro:IPR000873" /db_xref="GeneID:6289714" /translation="MNTVADRNSLTDRIWLKSYPEGVPAEINPDRYHSLVEVFRESVE KYRTRIAYVSVGTEMTYDECERQAKQFAAWLQSRGVKKGDRVAIMLPNSLQYPVCLFG TLLAGAIVVNVNPLYTVPELAHQLRDSGAQTIVVLENFARTLEQALPGSQVRNIVITG IGDLMGGALNLKGRALNFVMRHVQKQVPPYKLPSPVWLRDALAVGGSRTMQPVQLAPE DIAFLQYTGGTTGVAKGAMLTHRNIIANLLQAEEWSKSMLNGGVETNVTLLPLYHIFS LTVNLLMFMTLGGRNILIANPRDTKRVIFILRNERFSGIAGVNTLFNALLEDPDFATR DFSAMKITIGGGMAVQRAIAQRWKEVTGHTIVEGYGLTECSPVVSMNPPHVTEFSGTI GLPAPSTEVRFKRDDGTIAPLGEPGELQVRGPQVMRGYWQRPEETAKSIDAEGWFSTG DIGVMDANGYIRLIDRKKDMILVSGFNVYPNEIEDVVALHPDVLEVAAIGVPDPVAGE RVKIIVVPRTGALTEPALLEHCRAHLTGYKMPRIVEFRHEELPKSTVGKILRRELRDA DPDIKRARAQAQQ" gene complement(441729..443048) /locus_tag="Rpic_0414" /db_xref="GeneID:6289250" CDS complement(441729..443048) /locus_tag="Rpic_0414" /EC_number="2.3.1.16" /note="Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_001898004.1" /db_xref="GI:187927517" /db_xref="InterPro:IPR002155" /db_xref="GeneID:6289250" /translation="MLVNAQLRRVAILGGNRIPFARSNTAYATASNQQMLTAALQGLI DRFNLHGQRLDEVVAGAVIKHARDFNLTRETVLSTTLAKQTPAYDIQQACGTGLEAAI LVANKIALGQIDVGIAGGTDTTSDAPVGLNEKMRKILLEANRAKSTGARVKALAGLRP SMFVRPLLPRNSEPRTGLSMGEHCELMAKRWGIRREDQDALALRSHHNLTAAYERGFF TDLMTAHLGLDRDNNLRSNLTIEQLAKLQPVFDRSAAGTMTAGNSTPLTDGASCVLLA SEDWARAHNLPVLAYMTCADTAAVDFFSSTPEQNEGLLMAPAYAVSRMLQRAGLTLQD FDYYEIHEAFAAQVLSTLAAWESPEYCREKLGRSAPMGSIDRSKLNVNGSSLGTGHPF AATGGRIVATLAKMLAQRGSGRGLVSICAAGGQGVVAILERPETMSH" gene complement(443053..443973) /locus_tag="Rpic_0415" /db_xref="GeneID:6289251" CDS complement(443053..443973) /locus_tag="Rpic_0415" /note="PFAM: MaoC domain protein dehydratase; KEGG: pfl:PFL_2941 MaoC-like domain protein" /codon_start=1 /transl_table=11 /product="MaoC domain protein dehydratase" /protein_id="YP_001898005.1" /db_xref="GI:187927518" /db_xref="InterPro:IPR002539" /db_xref="InterPro:IPR003965" /db_xref="GeneID:6289251" /translation="MRTLAQPFPMVATQTLVTEPPSPGALAWRALLSQRKGRRGGPLP RHTLVRQEVPLEAEHIAQYAAVCGFSPAHGVPMTYPHLLGFSLQLMLMTESAFPYPVI GLVHLCNTIRQHQRLQAGERVRVEVRPRRLFHHARGQAFAIETAIVKAGAVVWESLST YLRVGVPSPQGAPLIALPSVQNLSLDGRWDVPADTGRRYAGVSGDWNPIHVSNIGAKL FGFAHPIAHGMWTKARALAALLPAAPLTEGEVVAEFKTPLSLPGAATLWQANEATPGR AFEVRNATGDKPYLRGMLTLPHAQQDNTGD" gene complement(443981..445393) /gene="fabG" /locus_tag="Rpic_0416" /db_xref="GeneID:6289252" CDS complement(443981..445393) /gene="fabG" /locus_tag="Rpic_0416" /note="Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis" /codon_start=1 /transl_table=11 /product="3-ketoacyl-(acyl-carrier-protein) reductase" /protein_id="YP_001898006.1" /db_xref="GI:187927519" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR002424" /db_xref="InterPro:IPR013968" /db_xref="GeneID:6289252" /translation="MQDKYLDFVGSGFGKWLSANLGLPQPVPLRRYVPGEPEFVGPFL VGAAPGGSMRETLAALFAETGVPTRFHESDPEWLGAANRHGQITGRFVAPTGKDGEAF DRIGGIVFDATGIATVDGLDALYHVFHDGVRAIGRCGRVVVIGRPPEGCKTPEMAIAQ RALEGLTRSLGKEVRRGCTAQLVYVAEGAENVAVSTLRFLLSARSAYVSGQVVRVHRA AAVSVDWQKPLAGRTALVTGASRGIGAAIAHVLARDGARVLCLDVPAAQEALNAVAQE IGGEAMAYDIAAPETPALLAQQLAALGGIDILVHNAGITRDKTIARMTEPAWRSVLDI NLAAQLRINDALLAANALHAGGSIVCVSSISGIAGNLGQTNYAMSKAGVIGLVQAGAP LLAERGITINAVAPGFIETQMTAAVPFAIREAGRRMNAMSQGGQPVDVAETIAWFANP ASNGVTGNIVRVCGQSLLGA" gene complement(445428..447938) /gene="fadE" /locus_tag="Rpic_0417" /db_xref="GeneID:6289253" CDS complement(445428..447938) /gene="fadE" /locus_tag="Rpic_0417" /note="functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase" /protein_id="YP_001898007.1" /db_xref="GI:187927520" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006092" /db_xref="InterPro:IPR013107" /db_xref="InterPro:IPR015396" /db_xref="GeneID:6289253" /translation="MMTIWIVLLCIGVLGLASMEASAFAWLVATAVWLVAGAWLGLVG PVMTTVLAIVFVLPALVLALKPLRRALITRPVLAMFRKIMPEMSQTERDAIEAGTVWW DAELFSGRPNWSRLLSSPQPRLSAEEQSFLDVETEKLCDLANDWESTQIWQDLSPDAW DYAKRAGFLGMIIPKEYGGKGFSAYAHSQVIMKLSTRCSAAAVSVMVPNSLGPAELLL HYGTEAQKNHYLPRLARGEEIPCFALTNAYAGSDAAAIPDVGVVCRGVHEGRETLGFR VTWSKRYITLGPIATVLGLAFRAVDPDGLLGGDKEPGITCALIPTKHPGVNIGRRHWP LNAVFQNGPNSGKDVFIPIDWVIGGQAQVGRGWRMLMECLAAGRAISLPSSNVGMAKL AVRSTGAYAAVRRQFRTPIGKFEGIQEALGRMGGNLYMMDAARRLSALAVDLGEKPSV ISAIAKYHVTERARDVVTDAMDIVGGKGICMGPNNFLARAYQQVPIAITVEGANIMTR CLIIFGQGVIRCHPYVLREMTAAQGADSTETLRAFDTALFGHGAFIAGNLVRAFLHAL SGGRVGSAPGNAAPEMQRYYRAVNRFSTALALLSDVSMFTLGGTLKRRESITGRLGDI LSQMYLISSALKRFEDDGRPAEDAPLVHWSVQDALVKAHDALDGVLANFPNTGIAALL RALIFPFGTPYRKPSDALAAQVAELMQTPGAVRDRLLADSYCPTPEVDPIAYGEAAFR LQPAVDAIEQRLKPAIRAGKLPPVPQSLPDFEAWTAQAVAQNLIDEGERKQLCDYARY GEHAVAVDDFPPDFNLMADLQRRKDALDALQAAERRAA" sig_peptide complement(445428..445505) /gene="fadE" /locus_tag="Rpic_0417" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.448 at residue 26" gene complement(448066..449124) /locus_tag="Rpic_0418" /db_xref="GeneID:6289778" CDS complement(448066..449124) /locus_tag="Rpic_0418" /note="PFAM: regulatory protein TetR; KEGG: rso:RSc0538 putative transcription regulator protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_001898008.1" /db_xref="GI:187927521" /db_xref="InterPro:IPR001647" /db_xref="GeneID:6289778" /translation="MGRPGAGDTKGRILEATELLFIEFGYEAMSLRQITARAKVNLAA VNYHFGSKEALMQSVLGRRLDPLNTRRLALLTACEERWTKEQLTCDHVLGALFVPALQ MARNPDTGGPAFLRLMGRVYSDTSPFVQSYLLGHYALVFDRFFEAFSRALPHLPRAEL GWRLHFALKALAGVLAGDDLNNLLPLFTQGKTMNDASLLARLTALVVATLNAPLPGEA GALDQVVELAEAQVPTPVAQADDAPNGNDSGNGGSGRHAGRGNGRAERSATPTTASPF AGDLFGRTPARASADDAADAHDDLGAGAHDDTHGDDSDVGGPAPTARTRALAIRRSNA ARAIFPANPMRPWRSPNA" gene complement(449413..449582) /locus_tag="Rpic_0419" /pseudo /db_xref="GeneID:6289779" gene 449858..451540 /locus_tag="Rpic_0420" /db_xref="GeneID:6289780" CDS 449858..451540 /locus_tag="Rpic_0420" /note="PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: rso:RSc0539 probable ATP-dependent RNA helicase protein" /codon_start=1 /transl_table=11 /product="DEAD/DEAH box helicase domain protein" /protein_id="YP_001898009.1" /db_xref="GI:187927522" /db_xref="InterPro:IPR000629" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014014" /db_xref="InterPro:IPR014021" /db_xref="GeneID:6289780" /translation="MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILRGGDLLAG AQTGTGKTAGFTLPLLHRLSAAQPNKVQTPQGMRFPIRALVLTPTRELAAQVEESVRA YGKYLPLKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVL DEADRMLDMGFIHDIRKILNILPAKRQNLLFSATFSDDIRELADRLLDKPALIEVARR NTTAETVEQRIYPVDRERKRELLAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIP ALAIHGNKSQSARTRALTEFKAGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDY VHRIGRTGRAGAQGEAISLVCVDEHGLLRDIERLIKRELPRTVLERFEPDPTIAAEPI PNGRNPAGRGGNARGGRPGGGRSQQPRQASGNAAPREPRAPREPREPRRESSGNGQGQ GQGQNQGQGRNGGGSRQRQAQGQRDGQAAPKPRNGQSQARGQRQVNGQGQGQGQGQGQ GNGQGGQGGQGGQQRRASNTQAAQPAHKGQPAKQPFNGLFAKAAALLGGRKA" gene 451546..452580 /locus_tag="Rpic_0421" /db_xref="GeneID:6289781" CDS 451546..452580 /locus_tag="Rpic_0421" /note="catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages" /codon_start=1 /transl_table=11 /product="serine/threonine protein kinase" /protein_id="YP_001898010.1" /db_xref="GI:187927523" /db_xref="InterPro:IPR002575" /db_xref="GeneID:6289781" /translation="MHDDGPPASVDAPYDGLTPDSILDALAQVGLMPDGRMFALNSYE NRVYQAGVEDSAPVVVKFYRPGRWTDAQIVEEHAFTAELAAAEIPVVAPLEIDDRTLH AFERWHFAVFPRCAGRVPAIDQDHTLEWMGRFLGRIHVVGARRPFVARPALDIDTFGV QSRDWLLEHDFIPPDLLPAWRSVADAALDGVRRCYDRAGDVSLLRLHGDCHASNVLWI EEADAKQGDPLRSAGPHFVDFDDSRTGPAVQDLWMLLSGDRASMQSQLASLLAGYEDF CEFDTRELYLVEALRTLRLLHYSAWLARRWNDPAFPAAFPWFNTQRYWQDRVLELREQ IALLDEPPLW" gene complement(452614..453510) /locus_tag="Rpic_0422" /db_xref="GeneID:6287221" CDS complement(452614..453510) /locus_tag="Rpic_0422" /note="PFAM: Pirin domain protein; KEGG: rso:RSc0541 probable pirin-like protein" /codon_start=1 /transl_table=11 /product="Pirin domain protein" /protein_id="YP_001898011.1" /db_xref="GI:187927524" /db_xref="InterPro:IPR003829" /db_xref="InterPro:IPR008778" /db_xref="GeneID:6287221" /translation="METLVQPQVQRARLVERIITGRPTSDGAGVKLTRVLTNNLQRRL DPFLMLDAFRSDDPNDYLAGFPDHPHRGFETVTYMIAGRMRHRDSAGHEGLLQHGGVQ WMTAGSGVVHSEMPEQEDGVMEGFQLWLNLPASDKMTTPWYRDIPSNEIPEFTTEDGV AVRVIAGESHGVQGAMTREATQPLYLDITLPAGASFAQRLPAGHNAFVYVFRGSALVG DAEASGDAGLQRVEDKQMAILANTEGSDGVVIRAGDAEARVLLVAGKPLNESIAQYGP FVMNTQEEIFQAVRDFQAGKFA" gene 453659..454576 /locus_tag="Rpic_0423" /db_xref="GeneID:6287222" CDS 453659..454576 /locus_tag="Rpic_0423" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc0542 probable transcription regulator protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_001898012.1" /db_xref="GI:187927525" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:6287222" /translation="MDLNQLALFVRVVEAGSFTAAATRLDLPKSSVSRGIAALEQDLN VRLLQRTTRTLHLTDAGQSLYQVASHALEDIERATTCAGELQDLPRGKVRITSSEDVG RLLVAPVAARFMQLYPEIDLDVVLTPRNVDLVQEGFDLAVRVGRLADSSLVARSLGVL RIGLFASPDYLQRRGAPDTVQGLADHCCLDFRGTGRGETQWRLVGPDGLKTVAVRARL NADSLIYLETLIASGAGIGPLPLYASAVARANAPLPRLVRVLPDYATSGEPINLVTPS ARFVPRRVRLLIDMLTESIRQELENADPT" gene 455034..455774 /locus_tag="Rpic_0424" /db_xref="GeneID:6287223" CDS 455034..455774 /locus_tag="Rpic_0424" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RSc0543 probable response regulator transcription regulator protein" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_001898013.1" /db_xref="GI:187927526" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:6287223" /translation="MRIALLEDDPFQSEVIVQILSQSGHDVVTYTDGSTLLRMLGRSS YDMLILDWHTPGMLGIDVLSVVRSRHKDVLPVLFVTAEEGEKSLVRALTHGADDYIAK PFRIAELRARVDALLRRAYPIPYGRLPFAVGPYHFNPQRQQVTLHGEPVTLTGIEFQL ALLLFSNVGRTLSRDHIFGQVWGRNSSEYTRTIDSHVSRIRMKLNVEPVNEVRLVAVY KHGYRVDHLRPADDMNALSDMDAAFYST" gene 455854..456186 /locus_tag="Rpic_0425" /db_xref="GeneID:6287224" CDS 455854..456186 /locus_tag="Rpic_0425" /note="PFAM: Cupin 2 conserved barrel domain protein; KEGG: spe:Spro_2546 cupin 2 conserved barrel domain protein" /codon_start=1 /transl_table=11 /product="Cupin 2 conserved barrel domain protein" /protein_id="YP_001898014.1" /db_xref="GI:187927527" /db_xref="InterPro:IPR013096" /db_xref="GeneID:6287224" /translation="MLRASHILGEAGVPLVNLNAEADALPRAWSSRVLERFGGGNFKV LRMDGTPYPNEVHGYAEGLLVIDGQLRLRIGDEAVTVSRGELYVVPAGVPHSVDAGSA GTLVILDV" gene complement(456170..456745) /locus_tag="Rpic_0426" /db_xref="GeneID:6287908" CDS complement(456170..456745) /locus_tag="Rpic_0426" /note="KEGG: rso:RSc0544 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898015.1" /db_xref="GI:187927528" /db_xref="GeneID:6287908" /translation="MSLLHTFLPEHQFSERHHIRVNASPARVLDMASQLHVTDFPVAR LLLYLRAIPARIAAALGKPSARRIDARFGLHDFTVLGRDGDQEFALGLVGRFWESAGG LIHVEASAFRTFSEPDIAKLVMTFVARPEGADTLLTTRTCVHCSSTTALRRFTPYWIL IRMPSGLIRRMMLQRIKQLAEADDAPLTRPE" gene complement(456765..457973) /locus_tag="Rpic_0427" /db_xref="GeneID:6287909" CDS complement(456765..457973) /locus_tag="Rpic_0427" /note="PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: rso:RSc0545 probable oxidoreductase protein" /codon_start=1 /transl_table=11 /product="monooxygenase FAD-binding" /protein_id="YP_001898016.1" /db_xref="GI:187927529" /db_xref="InterPro:IPR000759" /db_xref="InterPro:IPR002938" /db_xref="InterPro:IPR003042" /db_xref="InterPro:IPR006076" /db_xref="GeneID:6287909" /translation="MSALRPLSIGIAGAGNAGLAAAIAFARQGHDVHVFEKHPQLTAM GAGLLVQPQGIRALEALGVGRELEGIGAPIDRLIGLSHRGWRLLDIDYAETPGRAVTR HGLSSMLYDAGLHAGAAFHFGCAIQQLLVDGPRARVTHAQGESIFDLFVIADGAASAL REPAGLAGPSSTYRWGTLWFQGWVDGWNPRVLQQRFRGTREMMGLLPTEVDGNCTRLS MFWSLPGDAVDAWRQTDITQWKAHVLSLWPQAAPMVEQIGSHDDMPFAVYRHTWPRAL AKPPYCVIGDAAHAMSPQLGLGTTLAAQDALALAACVQVHGPTHGALAYHARRLRTVQ AYQTLSRALTPCFQAQYGGWMRDVVFATGLRVPGVAWLMKRSLAEPPARDAAFAPAAA STSTSEKPQA" sig_peptide complement(456765..456845) /locus_tag="Rpic_0427" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.979) with cleavage site probability 0.648 at residue 27" gene 458095..459018 /locus_tag="Rpic_0428" /db_xref="GeneID:6287910" CDS 458095..459018 /locus_tag="Rpic_0428" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_C7601 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_001898017.1" /db_xref="GI:187927530" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:6287910" /translation="MQIKWLEDFKELAKTRSFSRAAENRNVTHPAFGRRIKALEEWVG TALVERSEHPVTLTAAGRLFLDAAANAVDGLNDARLLLREAQLPVALRIGTGRTLART FVPGWYETLARQRGVFPLSVTTGGTQEGVLALADGTVDLLIAYASPQADALLDPRKYD HCLLGSETLVPVSAPDKRGRPRFTLPGSAAAPLPWLAFARGLTLRQMLDSHLAAADRK AHLQPVFQADFYEAVEEMALRGFGMAWLPYRLARPHLNAGELRPAGDDAWHIHVNIRM MRVRSNQSALLDEVWQRAVDNASGNGRNDLT" gene 459158..460491 /locus_tag="Rpic_0429" /note="major facilitator superfamily, (MFS_1) family" /pseudo /db_xref="GeneID:6287911" gene 460523..461509 /locus_tag="Rpic_0431" /db_xref="GeneID:6289770" CDS 460523..461509 /locus_tag="Rpic_0431" /note="PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: bur:Bcep18194_C7599 succinylglutamate desuccinylase/aspartoacylase" /codon_start=1 /transl_table=11 /product="Succinylglutamate desuccinylase/aspartoacylase" /protein_id="YP_001898018.1" /db_xref="GI:187927531" /db_xref="InterPro:IPR007036" /db_xref="GeneID:6289770" /translation="MMTLEALRATLPVYPIELHKPDIRRWKTGTHGIDYVHTFDSGVP GPHVMINALTHGNELCGAIAVDALLAAGVRPARGRLTLSFANVEAYERFDINDPDATR FIDEDLNRVWSADKLDGPGNSLELRRARELRPVIDTVDYLLDIHSMHEKAEPLMLTGP HAKGVALGRLVGAPSHLMIDAGHAAGRRLRDYGGFGDAASPKNALLIECGQHFERVSR DVALDACARFLVALGTVDASAVSEWLGMAPALEVRCIRVTDPVVAKSTAFRFADDYRG METIARAGTVIATDGALQIVTPYDNCVLLQPSLRHLAPGVTVVRLGRLEGSA" gene complement(461506..462174) /locus_tag="Rpic_0432" /db_xref="GeneID:6289771" CDS complement(461506..462174) /locus_tag="Rpic_0432" /note="PFAM: regulatory protein TetR; KEGG: bpd:BURPS668_A2819 transcriptional regulator, TetR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_001898019.1" /db_xref="GI:187927532" /db_xref="InterPro:IPR001647" /db_xref="GeneID:6289771" /translation="MEKTLETDDAPVRKGRPYGGVAPEARAAERRDALIRAGTRVFGT VGFRKATVRAICQEAKLNDRYFYAAFDSTEALLRATYQQHAEDLRAQVYEATAAAEGT LEARIDAGLHAFFVFLREPCAARVLLLEVMGVSPETDATYQRNLLEFGKQIMANAQLP GAHNDDDAELRADQRIIGLALVGALTNVGAAWLLTGYRDPEEKMVRNCRQVVLGTLRA MLGV" gene 462283..463833 /locus_tag="Rpic_0433" /db_xref="GeneID:6289772" CDS 462283..463833 /locus_tag="Rpic_0433" /note="PFAM: FAD dependent oxidoreductase; KEGG: bpd:BURPS668_A2821 arylesterase/monoxygenase" /codon_start=1 /transl_table=11 /product="FAD dependent oxidoreductase" /protein_id="YP_001898020.1" /db_xref="GI:187927533" /db_xref="InterPro:IPR001100" /db_xref="InterPro:IPR001327" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR013027" /db_xref="GeneID:6289772" /translation="MNTTMERSASPGVPRNRAAAPDTDLDVLIVGAGLSGIGAAYHLR ERCPSARFTILEGRESIGGTWDLFRYPGIRSDSDMFTLGYSFRPWHSNKAISDGQTIL DYIRDTAGVFGIDKSIRFRHKVTGASWDSAAARWTVQALRCDGSREEPVLFTCKFLYM CSGYYDYEEGHAPTWPAMDTFQGRIVHPQHWPNDLSYGGKRVVVIGSGATAVTLVPAM AGTAQHVTMLQRSPTYIVSRPEQDAVANTLRRWLPSGLAHRLVRTKNVLLTMYFYSLA RRKPKAFKEFIIRMAGKQIGPGFDVRKHLTPRYNPWDQRLCLVPDGDLFKTIRAGKAS IATDEIARFTPTGLQLKSGEHLDADVIVTATGLKLKVLGGAAITVDGRAVNLAETVSY KGMMYSGVPNLASSFGYTNASWTLKAELIAQYVCRLLNHMQSNGFDTCVPRLGDEAMS REPAVDLTSGYIQRAAAILPKQGDKQPWKSYQNYARDLMMLKFGTLADSAMQFERRAQ PTGAAQPA" gene 463857..464813 /locus_tag="Rpic_0434" /db_xref="GeneID:6289773" CDS 463857..464813 /locus_tag="Rpic_0434" /note="PFAM: alpha/beta hydrolase fold; KEGG: bte:BTH_II0402 hydrolase, alpha/beta fold family" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold" /protein_id="YP_001898021.1" /db_xref="GI:187927534" /db_xref="InterPro:IPR000073" /db_xref="InterPro:IPR003089" /db_xref="GeneID:6289773" /translation="MTYTILGVIALAILAPVAFTFFIARRVTKGFPPEGKFIDIGGDR VHYTDRGTGPAIVFVHGLCGNLRNFAYLDLDRLTRSHRVIVIDRPGAGRSVRGGDSPA NVYAQARTVAQCIEQLGLDKPVLVGHSLGGAISLAVGLNHPHVIRRLALIAPLTHAES TPPGAFRGLVLTSPLVRRLVSWTLAIPLSIINSRKAIAAVFAPEAMPKDFPFKGGGLL GLRPHVFYAASSDLVAAPEDLPDMERRYASMTVPVDVLYGRGDRILNVKRQGEALKQK LDRVNLRIIDGGHMLPVTQPVLTTDWVLAVAAGVPVEAEALA" sig_peptide 463857..463919 /locus_tag="Rpic_0434" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.837) with cleavage site probability 0.618 at residue 21" gene complement(465221..465349) /locus_tag="Rpic_0435" /db_xref="GeneID:6288489" CDS complement(465221..465349) /locus_tag="Rpic_0435" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898022.1" /db_xref="GI:187927535" /db_xref="GeneID:6288489" /translation="MPDPTWFPKDAAAGRTGAAFEQQVSTAARDQGNPPPSHNRIM" gene 465455..465844 /locus_tag="Rpic_0436" /db_xref="GeneID:6288490" CDS 465455..465844 /locus_tag="Rpic_0436" /note="KEGG: rme:Rmet_4407 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898023.1" /db_xref="GI:187927536" /db_xref="GeneID:6288490" /translation="MDVQQLVSEFLASEQGSQATQALAARGISTDDAQAMLSQAAETA HAHVEEQNAGLMGEHGGRSFFAAFAAGLVRGDGFFKSLVEGGEGILTGRVAESLAGKM GIDPSIASTVAAAATPYLVAFLKERLA" gene 466461..466955 /locus_tag="Rpic_0437" /db_xref="GeneID:6288491" CDS 466461..466955 /locus_tag="Rpic_0437" /note="KEGG: rpb:RPB_1591 hypothetical protein" /codon_start=1 /transl_table=11 /product="McrBC 5-methylcytosine restriction system component-like protein" /protein_id="YP_001898024.1" /db_xref="GI:187927537" /db_xref="GeneID:6288491" /translation="MRVLQPLGIVIRLQSPQKYLAFEESQQRSAFLMKPDVTASRDGR VRWILDTKWKELSAGEAKEGVAQSDLYQMYAYASCYNCSEVVLLYPHHGALGQSAGVR ATYLLNPWAERASQEPARRVRVATMDLADLKTVPRQLERIVLDYNAQAPVEIADGVPS HALR" gene complement(467686..469287) /locus_tag="Rpic_0438" /db_xref="GeneID:6288492" CDS complement(467686..469287) /locus_tag="Rpic_0438" /note="KEGG: rru:Rru_A3316 phage integrase" /codon_start=1 /transl_table=11 /product="phage integrase" /protein_id="YP_001898025.1" /db_xref="GI:187927538" /db_xref="GeneID:6288492" /translation="MQKQNYLVRRESSAHYYFRRAVPPHLRASLGKREIVISLRTRDR RTAEVRARQHAVSTDAEFLLHEQLVHNQGNAHPDETVGLSRPLEPQHIPTLAERYHET LVATHLEHPPTRAELADMRTWYRQLESELTDAAVLGDTSFVEDAGQAHLAAEGFNPAL TAPATLHLYYQRLLHADLVAIRQQLQHLSGAPIEKPKVRPSPLEGDNWEAMLECWKAE RAPGDKTWDEANRLVNRFRTFSNDLSPLDITTELVEAFRDSLLQEGLSRQRVKTILSL LRPVVGTAIEMKRCSLTGNPFADVKINVPKRAAGKEQRQPFELEHLQALFRSPVYTDG LRPKKGGGDAAFWLPLLGLFGGPRAEELGQLRVTDVLRRDGQLYLRISELGEDQELKT LASERMVPVHEELLRIGFESYVETMRERGEQRLFPGLKADRYGNYTKMFSTWCNEYID TYVVDDKRYAYHSFRHCFEEFAGWSGLTQYQIDGILGHSPQGMAKLYGKKSGSRRTFN PKVLAEGMAKYHVEGLDLSHLYGSY" gene 469794..470816 /locus_tag="Rpic_0439" /db_xref="GeneID:6287321" CDS 469794..470816 /locus_tag="Rpic_0439" /note="KEGG: bxe:Bxe_B2633 ATPase" /codon_start=1 /transl_table=11 /product="ATPase" /protein_id="YP_001898026.1" /db_xref="GI:187927539" /db_xref="GeneID:6287321" /translation="MDIKYAFWNNKGGTGKTSLAFQSIVRYAEKHSKKRILAIDMCPQ ANLSELMLGGLNNKGSEKLLARQGLVPRCSVGGYFQLRLPSPYAPPKFDAHDFITKPN SYNVGVPRNVDLVCGDPLLELQANAVNTLANNQIPGTNPWIAVIDWLKDFLDQVEAEY DVVFIDCNPSFSLYTQIALSTADRIVLPVMADDSSRRAIQNAFSLIYGLKLPSEIYAA YAFATKLKEAHRPLPKIHLIVKNRLTQYMGAASAYAAVLHAIERDVDKLLKSNPEIFG FKKLESGFVEVRDFQTTGVVAFAKGLPFSKLPVGKQSISGHRVQVKEDYLLNAQKAMD GLVASL" gene 470844..471803 /locus_tag="Rpic_0440" /db_xref="GeneID:6287322" CDS 470844..471803 /locus_tag="Rpic_0440" /note="KEGG: mac:MA3443 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898027.1" /db_xref="GI:187927540" /db_xref="GeneID:6287322" /translation="MADEYHYPPDLFDLLVDALGRLNKSKKGVVLFLRGAGVDETDLA EVDRTVRASPDAINKFEIARNVLIKVNARGDSGLRPRREIIKRVVEFEDFSNCWPEDQ LKARGLVAAIREAVNRKDSFTRMKQERDAEREQALVRQRAEQAAVAVKRAKIEQVTTG LSALFGMDAKPQERGKLLEGVLNDLFHAYGVYVREDFRRKDPDTSVVLEQIDGVIELD GTVYLVEMKWLKNPVGVAEFAPHLVRLFGRANASGIFISTTGYTEPVIKECINVLNQK TMVLCSLQEIVMLLQRQDDLIAFLKKKTHAAIIDKNPFLQILS" gene 471980..472939 /locus_tag="Rpic_0441" /db_xref="GeneID:6287323" CDS 471980..472939 /locus_tag="Rpic_0441" /note="PFAM: plasmid replicase; Primase 1; KEGG: bxe:Bxe_A3944 putative replicase" /codon_start=1 /transl_table=11 /product="plasmid replicase" /protein_id="YP_001898028.1" /db_xref="GI:187927541" /db_xref="InterPro:IPR004322" /db_xref="InterPro:IPR014820" /db_xref="GeneID:6287323" /translation="MEQARYDFYTHLNEAVVTTNDFSEGTKFRKREKVDQFAYCGLNP MYRSYLSFDLDMPGSAFRFEDAHLPPPTIITINPENAHCHMLYRLVTPVAFTKNARSG PQDYFGAIQREMERRLGADTAYNHTITKNPLNPRWKVITHPAAKYHLGDFLEWIDLPS ARIAVPGNTVYKGRNHQLFDTLLRWAYGAVHAHADEQRWYATVHAKAEEINAIFTQPL GFSEVRATARSTAKRVWQRRHEPHHSRPRILTFTDESSEERMRQGAAYTNAIRREKSL QTLQEAFNALRIEHGDQITVRQLVDHTAMNIKTVRKYLPQIVR" gene complement(473259..473684) /locus_tag="Rpic_0442" /db_xref="GeneID:6287324" CDS complement(473259..473684) /locus_tag="Rpic_0442" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898029.1" /db_xref="GI:187927542" /db_xref="GeneID:6287324" /translation="MDTNKKREIIKGKFPCEVPIIFSGIAPGVLDFVVHCKEEDKHLF EMFAATLRFRASRGAYTRNNAYNKMRRLILSAQYKESGSFILEFEWPKEPVFLHLDEE DVLSPCDDEHFTSLEKKNLRAALESKLNINRPAAKQLKI" gene complement(473700..474980) /locus_tag="Rpic_0443" /db_xref="GeneID:6288473" CDS complement(473700..474980) /locus_tag="Rpic_0443" /note="PFAM: MT-A70 family protein; SMART: ParB domain protein nuclease; KEGG: smd:Smed_1667 MT-A70 family protein" /codon_start=1 /transl_table=11 /product="MT-A70 family protein" /protein_id="YP_001898030.1" /db_xref="GI:187927543" /db_xref="InterPro:IPR002052" /db_xref="InterPro:IPR003115" /db_xref="InterPro:IPR007757" /db_xref="GeneID:6288473" /translation="MKTPTDKATPVGGFVIHAAANLFPAMNDSEFEEFKEDIRQNGQQ VPILVQNGQLIDGRHRYRACCELGIEPKVEEVPVDQSIERLVISLNQHRRHLLESQRA MIAARLANIGLGGNQHTGGLSQQQAADDLDVSVASVQRAKSVLVRGTDELIQAVDAGK VDVSNGADLAKLPQPSQRKVMSDVEKGILKEAKEIRKAIAAERREQCLAALEVKRANS KPLDPTKGPFSVVLADPPWNYLSEAQLGYTTMTLEEICQMPVNELAAEDAVLFLWCSA SLPQEALDVIKAWGFTFKTQAIWDKVHPGMGSYFRIQHEHLMIATRGNVPEVPGTVRF ASVFTEKRREHSRKPDCAYEMIEAMYPELNKIELFCRGEPRTGWAGWGNECGNGEIVQ AGVEVVVDTDAMPDAANDGGDPPRRRGRPRKVIA" gene complement(474996..475394) /locus_tag="Rpic_0444" /db_xref="GeneID:6288474" CDS complement(474996..475394) /locus_tag="Rpic_0444" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898031.1" /db_xref="GI:187927544" /db_xref="GeneID:6288474" /translation="MNKNVNSIITSAGMSAFDLCCDVEPVIEAVIDQTTFVVMRYITS SADFAAIFVVDMDKMAGVCVVQQQYFHMLTAILADPRHHKQVGEPVRFVGEDVPAEIA IFMTIATMAPEVLDGHDGYVSFEINVAAKQ" gene 475533..476390 /locus_tag="Rpic_0445" /db_xref="GeneID:6288475" CDS 475533..476390 /locus_tag="Rpic_0445" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898032.1" /db_xref="GI:187927545" /db_xref="GeneID:6288475" /translation="MTEMTDPNKVDSEDGAEGKHNAGRDRRSLLNIMRSRAYLYELMR RTNVVDVGKIRKAVLLEGGDSVSSRSLAETWNPRFDRAINGNLVITEQVLNQVSQKKR LASARLVHEVGPEENGGNVPLWAIFEDRFEEFDDIIESGLRLSKSGSDLGLNRADRIA LLFLPADQWHQLRTSPGVAVGPNLVQQAYDAGYFAADVLRLATAIAFWRLCLHGADAW APIETLLDWLMVGPYAGVVANLGISAEMRDLLRMIAEDHHIQQGNVTAAARALTRFGS DGKRADPFG" gene complement(476387..477463) /locus_tag="Rpic_0446" /db_xref="GeneID:6288476" CDS complement(476387..477463) /locus_tag="Rpic_0446" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898033.1" /db_xref="GI:187927546" /db_xref="GeneID:6288476" /translation="MLSTVLGRQPNSDVAQRERWTDEVALAQWLGEPVGTVEGWRLEA AGKQQYLLGAVIDWLDGHMVALMGSEAGTDEDATRIAEACWTSLIPALEVDGHLIGFF RSLHLEMEPQGYVIVYGDDMRALETARLTPEHATNLMAGYRALADFAQQLSTSPNQAL AIWHGVQDIVSPHLALQFFLATIGRDYDVAMEIVAGLDNTLLRSRWHLGCWLWELLLN HEFSNLNAGTLLSAFAFAISRGIDINIVKGNKDSLGYPVFNGTAAHLLADTHGDHFRA DLHRGFDEQVYKEFLCGLLGRSLDIDLANFGGLTARDIDESVQSKHGRRNPFGKVLNA YMLHDKLADTLPDNKPGKPGKQLI" gene 477646..480615 /locus_tag="Rpic_0447" /db_xref="GeneID:6287613" CDS 477646..480615 /locus_tag="Rpic_0447" /note="KEGG: mfa:Mfla_1215 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases" /codon_start=1 /transl_table=11 /product="type I site-specific deoxyribonuclease, HsdR family" /protein_id="YP_001898034.1" /db_xref="GI:187927547" /db_xref="InterPro:IPR004473" /db_xref="InterPro:IPR006935" /db_xref="InterPro:IPR007409" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014021" /db_xref="REBASE:RpiJORF450P" /db_xref="GeneID:6287613" /translation="MTAENRVEQDLISKLCDLKYTYRPDIRDRAALEANFREKFEALN RVHLTDSEFQRLLDSVITSDVYNAAQTLRNINSFERDDGTPLNFTLVNIRDWCKNDFE VVNQLRINTDNSHHRYDVMLLINGVPVVQIELKTLAVSPRRAMQQIVDYKSDPGNGYG KTLLCFIQLFIVSNRTDTWYFANNNARHFSFNADERFLPVYQFASEDNKKITQLDSFA EKFLAKCTLGQMVSRYMVLVASEQKLLMMRPYQIYAVKAIVDCIHQNCGNGYIWHTTG SGKTLTSFKASTLLKDNPDIDKCLFVVDRKDLDRQTREEFNRFQEGCVEENTNTETLV RRLLSDDYADKVIVTTIQKLGLALDGTNKRNYKERLEPLRNQRMVFIFDECHRSQFGE NHKAIKEFFPNAQLFGFTGTPIFEQNASYQQIEGQQASYRTTDDLFQRCLHQYTITHA IEDRNVLRFHVDYFKPEGKNPPKPGEGLAKAKVIETILTKHDAATNERKFNAVLATAS INDAIEYFEAFKILQAKRQDEDETFQQLNVACVFSPPAEGNKDVQQIQEDLPQEKEDN QQDPEGKKASLTRIIADYNARFGTNHRIGEFDLYYQDVQKRIKDQQYPNADLPHAEKI DITIVVDMLLTGFDSKYLNTLYVDKNVKHHGLIQAFSRTNRVLNDSKPYGNILDFRQQ QKPVEDAITLFSGEKIDNPREIWLVDPAPKVIDSLQTATQKLADFMQSQGLANAPEDV ANLKGDAARSQFVNLFKEVQRLKTQLDQYTDLSEEQKTQITQIASPDQLQGFKGVYLE TAKRLKEQQDKQGDQALPEVQQLDFEFVLFASAVIDYDYIMALIARMTQQKPGKLTLN REQLIGLIQSDAKFIDEREDIAEYIRGLPVGQALDETAIRAGFERFKAEKKTRELTDI ATKHGLAAEALQAFVDDVLRRRIFDGEALSELMAPLGLGWKARTQKELALVEDLTPLL HKLAQGREISGLSAYEQ" gene 480605..481912 /locus_tag="Rpic_0448" /db_xref="GeneID:6287614" CDS 480605..481912 /locus_tag="Rpic_0448" /note="PFAM: restriction modification system DNA specificity domain; KEGG: mfa:Mfla_1216 restriction modification system DNA specificity domain" /codon_start=1 /transl_table=11 /product="restriction modification system DNA specificity domain" /protein_id="YP_001898035.1" /db_xref="GI:187927548" /db_xref="InterPro:IPR000055" /db_xref="GeneID:6287614" /translation="MNNKDMGAMSEQNNPKRALVPRLRFPEFQDAGNWKTEALRKLAK RCAKKNSEGEHKRVLTNSAEYGVIDQRDYFDKDIANQGNLEGYYIVEKGDYVYNPRIS ASAPVGPISKNNVGTGVMSPLYTVFRFISSENDFFAHYFKSPHWHHYMRQASSTGARH DRMSITNDDFMNMPLPVSVPKEQQKIADSLSSLDELIMAENRKLGTLKVYKNGLMQQL FPREGETVPRLRLPGFRRDPQWISATLGDIANVQSGGTPARTNPAYWNGDIPWVTTSL IDSSTILKADEYITKAGLEESSAKIFPKGTLLMAMYGQGRTRGRVSVLGIDAATNQAC AAIILKRRGISTDFVFQNLASRYEEIRKISNSGGQENLSAGLIEGISFSFPDNESEQE YIANTLSSIDGLITTQRQKIDALEIHKKGLMQQLFPVMAEALA" gene 481909..483009 /locus_tag="Rpic_0449" /db_xref="GeneID:6287615" CDS 481909..483009 /locus_tag="Rpic_0449" /codon_start=1 /transl_table=11 /product="anticodon nuclease" /protein_id="YP_001898036.1" /db_xref="GI:187927549" /db_xref="GeneID:6287615" /translation="MKPGQAFTDLPALAAQLRQELENKKTILLYAYNGTGKTRLSMAF KDIGKQGDARDTLYFNAFTEDLFHWDNDLDGDSDRQLTLNAASRFFVGLAELEMDNRI RPLLQRYADFDFRIDTQEWVVRFSRTLDGQIIDNIKVSRGEENIFVWCFFLAIVQLVL DGAEAYRWVKYIYIDDPISSLDEHNAIAVANHLAQLLKRPESKLKTVISTHHTLFFNV LCNELGKARKYFVNKNSTGSGYVLREEMGDTPFFHHVAALAELYQAAQEDRLFTHHFN MLRTILEKTASFHGHKNFSACIKQEDDDPDGVLHTRLINILSHGNYSLFEPQQMLDEN KAYFRKILHDFLNRYPFNPDLFPQAVEEAGTQ" gene 483006..484619 /locus_tag="Rpic_0450" /db_xref="GeneID:6287616" CDS 483006..484619 /locus_tag="Rpic_0450" /note="TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: mfa:Mfla_1220 type I restriction-modification system, M subunit" /codon_start=1 /transl_table=11 /product="type I restriction-modification system, M subunit" /protein_id="YP_001898037.1" /db_xref="GI:187927550" /db_xref="InterPro:IPR002052" /db_xref="InterPro:IPR002296" /db_xref="InterPro:IPR003356" /db_xref="InterPro:IPR004546" /db_xref="GeneID:6287616" /translation="MTDLEKQKLGKTLWAIADQLRGAMNADDFRDYMLAFLFLRYLSD NYEAAAKKELGRDYPQQLDSSVSTPLQRWYESNLDDVPEFEKQMRRKVHYVIEPQFLW GNIAEMARTQDAVLLKTLQKGFSYIETESFASTFRGLFSEINLASDKLGKTYAERNAR LCKIIKEIADGLKQFSTDSDTLGDAYEYLIGQFAAGSGKKAGEFYTPQRISDILSAIV TLDSQEPATGKRSHLDRVMDLACGSGSLLLNVRHRMKEAKGTIGKIYGQEKNITTYNL ARMNMLLHGVKDSEFEIFHGDTLLNEWDMLRETNPAKMPKFDAVVANPPFSYRWEPTE ALGEDVRFKNYGLAPKSAADFAFLLHGFQFLKQDGVMAIILPHGVLFRGGAEARIRTK LLKDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKPDDVLFINAAEHFEKGKRQNQIL PEHIDKIIDTYQFRKEEARYSRRVGMEEIEKNDFNLNISRYVSTTEAEEEIDLAAVHA ELVSLDKKIKMATEQHNKFLKELGLPLLP" gene 484957..485367 /locus_tag="Rpic_0451" /db_xref="GeneID:6288916" CDS 484957..485367 /locus_tag="Rpic_0451" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898038.1" /db_xref="GI:187927551" /db_xref="GeneID:6288916" /translation="MEQQFEQAVPATSSNTNQTIAEQRRTQRVELRVTAIERAQLEAL ALASGYANLAQYLREIGLHTGRALPPTADYQLQLQWLQAINRIADHVREIADQLVGGR QPDDDMLYYLLQVHEMAEDIWKEARQNSKPAGDA" gene 485364..486737 /locus_tag="Rpic_0452" /db_xref="GeneID:6288917" CDS 485364..486737 /locus_tag="Rpic_0452" /note="PFAM: Relaxase/mobilization nuclease family protein; KEGG: bxe:Bxe_A3938 hypothetical protein" /codon_start=1 /transl_table=11 /product="Relaxase/mobilization nuclease family protein" /protein_id="YP_001898039.1" /db_xref="GI:187927552" /db_xref="InterPro:IPR005094" /db_xref="GeneID:6288917" /translation="MIVRIFNSGTSGGESPVRYLLSDTDHAGEKRSVEPEVLSGSPDL TIATINTITRKHKYVSGAIAFRDQERPSREQIMDIIGRFKQTVCPGLDARHYNSLFVL HRDKGNTEIHFVVPSLELTTGRRLSIHPPGPRNIALYDAFTKVTNHEFGYDQVIVDPL KLALSDFERKVPEGQRDRSNKLHLHKHLARSIRRGEITNRDQLCQHLEEQFGVVVTRK GADYMSVKFPGSQQAKRMRGPLYRADADYAQLLEQYRRPPPAKLTAAEYRQHKSVLAK LVAERKLFFAAAYLQPRQLRAHKARAALRPRPMRDRRPPSHNHKETKTMHPELNAIKR IASDALSVARQIRAERPVFTPANRAVVASRIQRLRDQAYQPRKTDLSEHAAMDTVHEV ENALGEIESDLSAATADVSHAKTPEQRRKAEERVAKLIAQKNRLLQQLAQAKLRQINA SAKRWRT" gene 486839..487147 /locus_tag="Rpic_0453" /db_xref="GeneID:6288918" CDS 486839..487147 /locus_tag="Rpic_0453" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898040.1" /db_xref="GI:187927553" /db_xref="GeneID:6288918" /translation="MDAHRKTPLTFFQQAIPEPFKNDSNADIGEVFIALIYPEILIRD ATGDYIIDCRQDGFYAEADDFPLLNFLEMFPTICDSLIAECTALKQRYERYLTDLQCL" gene complement(487120..488115) /locus_tag="Rpic_0454" /db_xref="GeneID:6288919" CDS complement(487120..488115) /locus_tag="Rpic_0454" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898041.1" /db_xref="GI:187927554" /db_xref="GeneID:6288919" /translation="MDDDFYSPESERKRQQAWREQLLDTQQSWGTLDDQHVAPPTDSS RHYWQWIANSEQKRAESSTGSSGINSGGGGGSGGGEFLLGLLLLPLLTVAILPTALVW HYRKKNWFYLVLTALLFAASAWYFLTKTHGALLDTALGVQVVFGVVYLPFAVTGWICH RLNDRIAKGAPFNFGAWSWIVLFSLAISFETLFFLWIEGFHWGADLVRFVGNSIVFFG GKTYISLSNYNDSATMLLAAFPNAVALSVLQAWFRKRQAQGKRAIPWLLYLPVVWVVG MALFLGFVITVNHLQRNSHASAMTPENQLAQAAAQPSLPSHARCAQHHKHCKSVR" gene complement(488148..489248) /locus_tag="Rpic_0455" /db_xref="GeneID:6288218" CDS complement(488148..489248) /locus_tag="Rpic_0455" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898042.1" /db_xref="GI:187927555" /db_xref="InterPro:IPR002110" /db_xref="GeneID:6288218" /translation="MDERAASNTQPSGDSTVRSALRLSSDWVSPINATVFTSTLILDL LAPLFGRATSRLAAVAGAACILLLLITMIRLERRRTEQQPIRSRLDFYARSRKLWLAT TCCMGGFALAFATFSHADAPNPSAIGSAVPAIGQLQQSLAALHAKVDVVAQRTSDIQD DTQAIRRAVDPQDDRGRLTRLGYGLDDESKARAIEACDIDATTLYAHLNETMPLALPV FGKRGGSTLEAPILAKNEHFAEMLRILSDDPKFDKAALSTAFPLTFTQAQTRSIPAMD GLLAKARRRGLRTVGLLPSMVKASPLIVAIWSGNADAATALLNAGANADAPAIEVIVP VMDHGNPALKNVSISTAREEAQRMKWTVPGLE" gene complement(489269..489790) /locus_tag="Rpic_0456" /db_xref="GeneID:6288219" CDS complement(489269..489790) /locus_tag="Rpic_0456" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898043.1" /db_xref="GI:187927556" /db_xref="GeneID:6288219" /translation="MESTFKRQYEKETLPDGSIKLTYKGSRHGAHFKAAMLVFNTGIV LFGWLISFLVIGAIAKDFTVGMVAGILLMGGVVFLYRKLFSKTTSITVRPEGIIFNKR GKTVFGGGEGRLAFRDVSGFGIATETASRNAEYTESSYIYANAGGQQISVTCHITRAL AEALLAEIHQVAA" gene complement(489855..490532) /locus_tag="Rpic_0457" /db_xref="GeneID:6288220" CDS complement(489855..490532) /locus_tag="Rpic_0457" /note="KEGG: ajs:Ajs_3592 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898044.1" /db_xref="GI:187927557" /db_xref="GeneID:6288220" /translation="MRHSYRAAVLAAACTMLTACAGLPQQMDQVADNLRQLGQSVSSP LVPSGPSAFSQSGLANVFKGTDPASKWPRVALTIDNMPADAQNNWFEWRAAPVPAASV AVAPANYCITISAVVWKSEKSSQRFDHIPYCGRDAKVRDITDDYTFMLLGWAQMPKNG GKNTGASRTFGPNPPLKSFPSRSIIIDTANSRASFMFAHLLMSMGLDLTVDYLHENRL WVVSTVQ" sig_peptide complement(489855..489920) /locus_tag="Rpic_0457" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.983 at residue 22" gene complement(490598..491809) /locus_tag="Rpic_0458" /db_xref="GeneID:6288221" CDS complement(490598..491809) /locus_tag="Rpic_0458" /note="KEGG: bmu:Bmul_4115 outer membrane autotransporter barrel domain protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898045.1" /db_xref="GI:187927558" /db_xref="GeneID:6288221" /translation="MKTILAYKKRALSIQNIVALSTVAIALAACGGGSDGSGSSNTST SGGSTTTTPQQDAVSQSSTALVAQTGATAVPGTTSTAQAFDLTADIGDTWRLVLNQDG SFTIKVLSTQYGLTDISGTYTQSTSGSFTTYTGTSANGSFTLKLDTRTHIMGGNVVLR TRSSSVAGSGYSVPANTATLAGDYFYIGATRNASDGGSPSFLGGTFRVAANGTDVTWC DSGLINASGTCNAVAGSSSPSQQFAFKLVKNTTDGLTHVQGSGSDLGILSFQAGDRGP VLVIDRFGYSQSATPVLRTGVIYASKQQVLAGTELNGSWTCTDRGTTIGTVTINGTTV KTADTSGVSTAETLYFNDISTNTGLVAVNGAATSVVNGQAPSSGVILLPLSSSMFVVE RDAAQSVATCR" sig_peptide complement(490598..490693) /locus_tag="Rpic_0458" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.992) with cleavage site probability 0.436 at residue 32" gene 491925..492170 /locus_tag="Rpic_0459" /db_xref="GeneID:6287081" CDS 491925..492170 /locus_tag="Rpic_0459" /note="PFAM: helix-turn-helix domain protein; KEGG: ppg:PputGB1_4174 transcriptional regulator, XRE family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family" /protein_id="YP_001898046.1" /db_xref="GI:187927559" /db_xref="InterPro:IPR001387" /db_xref="GeneID:6287081" /translation="MPRVSFKTDRDGQLALIGAAVRARRKAIPLSQEALADLAEIDRS HMGKIERGERNVTMLNVLRIAQALGCQPSELLADAGL" gene complement(492274..493035) /locus_tag="Rpic_0460" /db_xref="GeneID:6287082" CDS complement(492274..493035) /locus_tag="Rpic_0460" /note="PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: nmu:Nmul_A2417 transcriptional regulator, LuxR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LuxR family" /protein_id="YP_001898047.1" /db_xref="GI:187927560" /db_xref="InterPro:IPR000792" /db_xref="InterPro:IPR005143" /db_xref="GeneID:6287082" /translation="MVSPLYTFEGLLTAGSHAEIAAFMERHAGNLGYGRFFYSPLLVA GDARHFFKDDHNVVAAEMLYTKNIFSTYPASWIRRYQEAGHVAADPVVKLITTSNLPI HWDADDLQAARSPVFDEAREHGLATGITIPINGFDHTRALFSVTSDQAPERSQRHTDA ISGLAVLTALHLHEAVRRLDASMSNAPIPSLTSREKECLQWAAAGKTSWEIARILSVS ERTVIFHIGNATKKLGATNRRQAVARAISLRLIAP" gene complement(493040..493639) /locus_tag="Rpic_0461" /db_xref="GeneID:6287083" CDS complement(493040..493639) /locus_tag="Rpic_0461" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898048.1" /db_xref="GI:187927561" /db_xref="GeneID:6287083" /translation="MDFENRIKKEMTEGIVKAILEDAGYRVIDSGIEKVIRELSCMSS FEYAKLAYPDAMSRLPDFTVMTKDQDDKFLVEVKYRSKWGKDLFEEIRPQVEIFGELV LVSINADPPNHKGLYYPSTYLRCCRVRYQDEKYSVQLKYEDDQVWRHYWKAVDELKED SLWWAMSQLDKVFPLLKDRKLDAQNSLDSAIKALSGILK" gene complement(493734..495053) /locus_tag="Rpic_0462" /db_xref="GeneID:6287084" CDS complement(493734..495053) /locus_tag="Rpic_0462" /note="PFAM: integrase family protein; KEGG: bmu:Bmul_0646 integrase family protein" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_001898049.1" /db_xref="GI:187927562" /db_xref="InterPro:IPR002104" /db_xref="GeneID:6287084" /translation="MHKIPRLLRSRHGVYYLRLTHGKTDTRRSLGTKDFQRAKLSALL LNVHVEMSKSRLDAEMFRHLDIALPNGVKLTNIQPEDKGILFDILDKLGVTGEQLAAM PTTEVARLLAGPEPQRMEPPKPKSKPLSDVIALYLTEKKLDNVAKTLEDKERTFTEFQ GFFQDSDINAFDADTAIAYKNRLLAANASASRINAKTSFLRDLFAYAINNNLYFTTNP FEKVRVSSKTKLKQQVESYREFTDDDLKLIFAEAPYREFMNKPDYHWLPLLALYTGAR VEELASLSLNQIKKDGGIHYFEIEKAKNLNSIRKIPLHRQIETSGFLAYVDSVRAQGA TMLFPHLTAGKNGYSKNMSRRFGAYLDSLKISDSRKVFHSFRHTFITRMTELNVHPVL VMSMVGHYAQAKVDLSAPHVVNYQHEKPLSVLKQTIDRLEFPIKHFW" gene complement(495138..495214) /locus_tag="Rpic_R0002" /note="tRNA-Met5" /db_xref="GeneID:6288975" tRNA complement(495138..495214) /locus_tag="Rpic_R0002" /product="tRNA-Met" /db_xref="GeneID:6288975" gene complement(495263..496966) /locus_tag="Rpic_0463" /db_xref="GeneID:6288976" CDS complement(495263..496966) /locus_tag="Rpic_0463" /note="PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rso:RSc0547 putative sugar transporter transmembrane protein" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_001898050.1" /db_xref="GI:187927563" /db_xref="InterPro:IPR005828" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:6288976" /translation="MATVQSAPNAPVGRVQPAPMTREEKKVIFASSLGTVFEWYDFYL YGSLAAIIAKQFFSGLDPTAGFIFALLAFAAGFLVRPFGALVFGRLGDMIGRKYTFLV TIVIMGTSTFIVGLLPSYGTIGVAAPVILIALRMLQGLALGGEYGGAATYVAEHAPHG RRGAYTSWIQTTATLGLFLSLVVILAVRELTGKAFDDWGWRIPFLVSILLLATSVYIR LSMSESPAFQKMKAEGKTSKAPLTEAFGQWRNLKIVILALLGLTAGQAVVWYTGQFYA LFFLTQVLKVDAFTANVLIAVALAIGTPFFVFFGSLSDRIGRKKIIMAGCLLAVLTYF PLFKALTHYANPALERAQQTAQITITVDPKECSFQGSPIAREVDFRSSCDIAKRTLAQ SSASYETVEGPAGTVASVSIAGKQITSLNATRTADGQNFDADSKAKIADFKKQVSESL KAANYPAKADPAQMNTIMVLVILVILVIYVTMVYGPIAAMLVEMFPTRIRYSSMSLPY HIGNGWFGGLLPTISFALVAQNGNIYHGLWYPIWIAAITFVIGVLFVRETKDVDIYRN D" gene 497479..497787 /locus_tag="Rpic_0464" /db_xref="GeneID:6288977" CDS 497479..497787 /locus_tag="Rpic_0464" /note="PFAM: protein of unknown function DUF485; KEGG: bur:Bcep18194_B1981 protein of unknown function DUF485" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF485" /protein_id="YP_001898051.1" /db_xref="GI:187927564" /db_xref="InterPro:IPR007436" /db_xref="GeneID:6288977" /translation="MQDGLVGKIEAHPKYAQLKQRRNRLGLVLTVLMLAVYYGYIALI AFDKAFLAKPVGTGVMSVGMPVGMAVIIFTVVITGIYVRRANSEYDQLTQDILKDVAK" gene 497784..499514 /locus_tag="Rpic_0465" /db_xref="GeneID:6287037" CDS 497784..499514 /locus_tag="Rpic_0465" /note="TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: bur:Bcep18194_B1980 Na+/solute symporter" /codon_start=1 /transl_table=11 /product="SSS sodium solute transporter superfamily" /protein_id="YP_001898052.1" /db_xref="GI:187927565" /db_xref="InterPro:IPR001734" /db_xref="GeneID:6287037" /translation="MKKMLSILLVALLAAGACGAALAAGGDVGQTAKQETNTTAIVLF ALFVAGTLWITKWAAKRTRSAADFYTAGGGITGFQNGLAISGDYMSAASFLGISAAVM TSGYDGLIYSIGFLVGWPIITFLMAERLRNLGKFTFADVAGYRFEQGPIRSFAAVGTL VVVAFYLIAQMVGAGQLIKLLFGLDYWIAVVIVGALMMVYVLFGGMTATTWVQIIKAC MLLAGVTFMAIMVLAQYGFSLEALFAKAVQVKTAIAANAGKSPDEAAKIGLSVMAPGG FIKDPISAISFGMALMFGTAGLPHILMRFFTVPDAKEARKSVFWATTWIGYFYILIFI IGFGAITLVLTNPELSDVAKGVIKGGAGTANMAAVLVAKTVGGDVFYGFISAVAFATI LAVVAGLTLSGASAVSHDLYATVFKHGKANSADELKVSRITTLVLGVIAVLLGIAFEK QNIAFMVSLAFAVAASANFPVLFLSMLWKGCTTRGAVIGGFLGLISSVGLTIVSPSVW EATLGYPKGSAWFPYTSPALFSMTIGFVGVWLFSVLDSSVRAKNEKASFAAQQVRSET GLGAAGASGH" sig_peptide 497784..497855 /locus_tag="Rpic_0465" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.994 at residue 24" gene 499579..501405 /locus_tag="Rpic_0466" /db_xref="GeneID:6287038" CDS 499579..501405 /locus_tag="Rpic_0466" /note="PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: pna:Pnap_0480 cyclic nucleotide-binding protein" /codon_start=1 /transl_table=11 /product="putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase" /protein_id="YP_001898053.1" /db_xref="GI:187927566" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR005105" /db_xref="GeneID:6287038" /translation="MPSAFNFAVWPFDCLNQDEQRLVRDAVDIGYYPQGQSILDTGAA PQHLFLIIKGHVAQYDGEELIASYGPDDCFDGRALVAGKASSRFVAAEEVVAYQVARQ AVRDLIAANATFGALLFSDLGSKLSAIAQRQSMETMQSLAVSHVSDAFIRPAHFVDAD TDVVSVVKLFQAQSTSNVLVRDGTASPPRVGIFTRSSLQRAVLQGTPLDRLPVGRMSQ FSLITVPASAQIGDALTLMLRHRVHRLVVTRGDEILGLLESLDVFSFLANHSYLLTVQ INLAQDLDALAQVAAQITRMVALLTRGGSRIDHVASLVREINACLFERAWQMIAPPEL VENSCLFVMGSEGRGEQLLKTDQDNALVLRDGYVPPPDLQRIVTRFSDALAAFGYPPC PGGIMLSRPEWCMTASDFARRIREWLILPSPEGLMHLAIFFDAHAVCGDAALLKQLRR TLLELTIDNDAVLGRFAAAVEAFSAAPGWRDRLLGFGDPDPVLDVKKEGIFPIVHGVR SLALAHHILDETGTVPRLNALVRAEALDAHMAAELSESLHFLMTLRLKAGLAEIDAHQ PVSCDVHLSRLSSLERDLLKDALSAVKRFKALLRQRWRTEWM" gene 501422..502072 /locus_tag="Rpic_0467" /db_xref="GeneID:6287039" CDS 501422..502072 /locus_tag="Rpic_0467" /note="3'-5' exonuclease of DNA polymerase III" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit epsilon" /protein_id="YP_001898054.1" /db_xref="GI:187927567" /db_xref="InterPro:IPR006055" /db_xref="InterPro:IPR013520" /db_xref="GeneID:6287039" /translation="MSGRLSDWLRALQRRRLLRRLRDPAFRFLFEVPPPDEWVALDCE TTGLDVRTDEIISIGAVRIVGNRILTSQRLELLIRPQGEMRPESICVHRLRNRDLDSG VSIEQAVHTLLHFIGSRPLVGYYLEFDVAMLNRVVVPMLGIGLPQPKIEVSALYYDHQ FALLPPYRQQGDPDLDLRFATVMKELDLPTWDAHDALNDAVMAALAFVKLRHLGEA" gene complement(502081..502395) /locus_tag="Rpic_0468" /db_xref="GeneID:6287040" CDS complement(502081..502395) /locus_tag="Rpic_0468" /note="KEGG: rso:RSc0548 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898055.1" /db_xref="GI:187927568" /db_xref="GeneID:6287040" /translation="MSITPGTPARRRWIANMRWIAALLAVWFVVTFVVAFFARDLSQH FFNSDWTFAYWVGAQGAPIVYVLITVLYAWRTNRAADAAAQHDEAAQRDPSESSHLPP SI" gene complement(502392..503987) /locus_tag="Rpic_0469" /db_xref="GeneID:6288766" CDS complement(502392..503987) /locus_tag="Rpic_0469" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: rso:RSc0549 probable transmembrane sensor histidine kinase transcription regulator protein" /codon_start=1 /transl_table=11 /product="integral membrane sensor signal transduction histidine kinase" /protein_id="YP_001898056.1" /db_xref="GI:187927569" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR013727" /db_xref="GeneID:6288766" /translation="MGDRLAWPWRRHRASLRERTDAVPGADGRDGRDGRDGRDGGGDL ADTLPHLEDDATRPAARSLFGEILDWMLAPLLLLWPMSIAVTYLVAKSIANAPYDRAL ESSAIVLSQQLREVNGRVTLQLPISAREILRADETDNIYYQVLGTNGEFVSGDRDLPL PPEEDANAGGLVQLRDDHIHGAEIRVAYTFVQRPGSGGKPALVQVAETLDKRAQLANE IIKGVILPQFVILPLAVILVWFGLSRGLAPLNAIQERIRARNPGDTSPIDEGAAPQEL TPLVASFNDLLGRLEQSVHTQKRFIADAAHQMKTPLAGLRMQAELAQREQSPDELRRT LAHIADSSDRTAHLVKQLLSLARMENMGATDGMVPLDICALSRRVVADWLPKAWAKQI DLGFEEPGPPVTISGNATMLAEMLNNLLDNAIRYTPDGGHVTVRVTTAPFEPFVFIDV DDTGPGIPVAERERVMQRFYRILGTQAEGSGLGLAIVREIVQQHGGDIEVLDNVYQVS PRLAGARFRITLHRCSPSEEPNA" gene complement(503980..504690) /locus_tag="Rpic_0470" /db_xref="GeneID:6288767" CDS complement(503980..504690) /locus_tag="Rpic_0470" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RSc0550 probable response regulator transcription regulator protein" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_001898057.1" /db_xref="GI:187927570" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:6288767" /translation="MRILIAEDDATLADGLTRSLRQAGYAVDQASDGATADAALSAQT AQTYDLLILDVGLPRMSGLEVLKRLRSRGAMLPVLILTAADSVEERVKGLDLGADDYM AKPFALSELEARVRALVRRGTGGGATLVRHGPLAFDQVGRIAYIHDQVVELSAREIGL LEILLARVGRLVSKEQLVDHLCGWGEEVSNNAIEVYIHRLRKKIEVEGIRIATVRGLG YCLERTATPTTTATAAHG" gene 504956..506014 /gene="recA" /locus_tag="Rpic_0471" /db_xref="GeneID:6288768" CDS 504956..506014 /gene="recA" /locus_tag="Rpic_0471" /EC_number="3.6.3.8" /note="catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs" /codon_start=1 /transl_table=11 /product="recombinase A" /protein_id="YP_001898058.1" /db_xref="GI:187927571" /db_xref="InterPro:IPR001553" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013765" /db_xref="GeneID:6288768" /translation="MEDGKKAATMSAEKQKALAAALAQIEKQFGKGSIMKMGDAEVEP VQVVSTGSLGLDVALGVGGLPRGRVIEIYGPESSGKTTLTLQVVAEMQKLGGTCAFID AEHALDVTYADKIGVSVPDLLISQPDTGEQALEIADALVRSGSVDLIVIDSVAALVPK AEIEGEMGDALPGLQARLMSQALRKLTGTIKKTNCMVIFINQIRMKIGVMFGSPETTT GGNALKFYASVRLDIRRIGSIKRGDDVVGNETKVKVVKNKVAPPFREAIFDILYGQGV SREGEIIDLGVEAKVVEKSGAWYSYGGERIGQGRDNCREYLRENPDLAREIENKVREQ LGVTPMGAVAVAEEVGEE" gene 506125..506604 /gene="recX" /locus_tag="Rpic_0472" /db_xref="GeneID:6288769" CDS 506125..506604 /gene="recX" /locus_tag="Rpic_0472" /note="binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities" /codon_start=1 /transl_table=11 /product="recombination regulator RecX" /protein_id="YP_001898059.1" /db_xref="GI:187927572" /db_xref="InterPro:IPR003783" /db_xref="GeneID:6288769" /translation="MPLPRQPLSLKARALGYLSRREHSRVELRRKLVPHAESAEEVDA LLDWLEGENWLSNTRFAESMVHRRAGRYGTARLMQELKTHQLGEETLGEVKAQLQSTE AVRAKALWEKRFGRPPADLAERAKQVRYMMARGFSRSVVSRIIAGADELLEDGDMSD" gene 506891..507517 /locus_tag="Rpic_0473" /db_xref="GeneID:6288967" CDS 506891..507517 /locus_tag="Rpic_0473" /note="KEGG: rso:RSc0553 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898060.1" /db_xref="GI:187927573" /db_xref="GeneID:6288967" /translation="MPLSAPLPRAMRHRRAITVEAYLREDGLWDIEARLTDIKPRDIP LASGGVRPEGEPLHDLWLRVTIDTRMNVVDAEACSDWVPYPTHCDTIGPAYRKLIGLN LMKGFRKASRERLGGVAGCTHLTELCGVLPTAAIQAFAGDVFPVRDNANDLRPIEPGE KPPYQLHGCHALHLEGEVVRKHYPRWFAYQPEAKIQPPPTELSPEPSS" gene 507584..508750 /gene="sucC" /locus_tag="Rpic_0474" /db_xref="GeneID:6288968" CDS 507584..508750 /gene="sucC" /locus_tag="Rpic_0474" /EC_number="6.2.1.5" /note="catalyzes the interconversion of succinyl-CoA and succinate" /codon_start=1 /transl_table=11 /product="succinyl-CoA synthetase subunit beta" /protein_id="YP_001898061.1" /db_xref="GI:187927574" /db_xref="InterPro:IPR005809" /db_xref="InterPro:IPR005811" /db_xref="InterPro:IPR011761" /db_xref="InterPro:IPR013650" /db_xref="GeneID:6288968" /translation="MNIHEYQGKEILRKYNVPVPRGIPAFSVDEAIKAAETLGGPVWV VKAQIHAGGRGKGGGVKVAKSIEQVKEYASSILGMTLVTHQTGPEGKLVKRLLIEEGA DIKKELYVSLVVDRVSQQVALMASSEGGMDIEEVAESHPEKIHTLLIDPQAGLQDAQA DDIARKIGVPDASVPQARQALQGLYKAFWETDASQAEINPLILTGDGKVIALDAKFNF DSNALFRHPEIVAYRDLDEEDPAEIEASKFDLAYISLDGNIGCLVNGAGLAMATMDTI KLFGGEPANFLDVGGGATTEKVTEAFKLMLKNPDVKAILVNIFGGIMRCDVIAEGVIA AAKAVSLSVPLVVRMKGTNEDLGKKMLADSGLPIIAADTMAEAAEKVVAAAAGK" gene 508839..509720 /locus_tag="Rpic_0475" /db_xref="GeneID:6288969" CDS 508839..509720 /locus_tag="Rpic_0475" /note="Catalyzes the only substrate-level phosphorylation in the TCA cycle" /codon_start=1 /transl_table=11 /product="succinyl-CoA synthetase subunit alpha" /protein_id="YP_001898062.1" /db_xref="GI:187927575" /db_xref="InterPro:IPR003781" /db_xref="InterPro:IPR005810" /db_xref="InterPro:IPR005811" /db_xref="InterPro:IPR017440" /db_xref="GeneID:6288969" /translation="MSILINKDTKVITQGITGKTGQFHTRGCRDYANGKNAFVAGVNP KKAGEDFEGIPIYATVKDAKAQTGATVSVIYVPPAGAADAIWEAVEAELDLVVCITEG IPVRDMMMVKDKMRKAGSKTLLLGPNCPGLITPDEIKIGIMPGHIHRKGRIGVVSRSG TLTYEAVGQLTALGLGQSSAVGIGGDPINGLKHIDVMKMFNDDPETDAVVMIGEIGGP DEANAAYWIKDNMKKPVVGFIAGVTAPPGKRMGHAGALISGGADTAQAKLDIMEECGI KTTKNPSEMARLLKAML" gene 509874..510569 /locus_tag="Rpic_0476" /db_xref="GeneID:6288970" CDS 509874..510569 /locus_tag="Rpic_0476" /note="PFAM: Integral membrane protein TerC; KEGG: rso:RSc0556 hypothetical protein" /codon_start=1 /transl_table=11 /product="Integral membrane protein TerC" /protein_id="YP_001898063.1" /db_xref="GI:187927576" /db_xref="InterPro:IPR005496" /db_xref="GeneID:6288970" /translation="MALTSSAFWFALGSIILTNIVLSGDNAVVIALAARNLPKRQQKQ AIFWGSAGAIVLRVVLTVLAVKLLALPYLKTIGALLLVYIGVKLLTEAEDEASDRHQQ GGLWPAIQTILIADFVMSLDNVVAVAAAAEKGPPGTTFLLLVLGLGLSVPLIVFGSTL LVGVMARFPVIITLGAALLGYLAGDMLVTDPIDAAWFERAVPYADVVVGCVGALLVVC VGWWLSRRTLRQA" sig_peptide 509874..509945 /locus_tag="Rpic_0476" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.744) with cleavage site probability 0.709 at residue 24" gene 510755..511276 /locus_tag="Rpic_0477" /db_xref="GeneID:6288437" CDS 510755..511276 /locus_tag="Rpic_0477" /note="KEGG: rso:RSc0557 probable type 4 fimbrial pilin signal peptide protein" /codon_start=1 /transl_table=11 /product="putative type 4 fimbrial pilin signal peptide protein" /protein_id="YP_001898064.1" /db_xref="GI:187927577" /db_xref="InterPro:IPR001082" /db_xref="InterPro:IPR001120" /db_xref="InterPro:IPR002416" /db_xref="InterPro:IPR012902" /db_xref="GeneID:6288437" /translation="MVFKHSKGIKRRAGGFTLIELMIVVAIVGILAALAIPAYQDYTI RSRVTEGLIIAVQAKALVVENAANAQSSLSLGAASLSATRNVASLDIDGSSGEISIGF TSSVAGAGSNTLILTPYSGTASSTYANLSAGSAPPAVVMWACSANGKQMPPNVNRTGT PTLDARYAPAECR" sig_peptide 510755..510862 /locus_tag="Rpic_0477" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.709) with cleavage site probability 0.550 at residue 36" gene 511529..512038 /locus_tag="Rpic_0478" /db_xref="GeneID:6288438" CDS 511529..512038 /locus_tag="Rpic_0478" /note="KEGG: rso:RSc0558 type 4 fimbrial pilin signal peptide protein" /codon_start=1 /transl_table=11 /product="type 4 fimbrial pilin signal peptide protein" /protein_id="YP_001898065.1" /db_xref="GI:187927578" /db_xref="InterPro:IPR001082" /db_xref="InterPro:IPR001120" /db_xref="InterPro:IPR002416" /db_xref="InterPro:IPR012902" /db_xref="GeneID:6288438" /translation="MKSMRRLNKRVQKGFTLIELMIVVAIVGILAAIAIPAYQDYTIR ARVTEGLSLAAAAKVLVAENAANAQSDLSAGSTVFAATKNVNNLVVSGTDGHITITYG SAVSTSNPTLTLTPYFTVGSTNSNLAQSSAPAAPVQWKCASASATAPTGVTVTLGSLP AKWAPAECR" sig_peptide 511529..511633 /locus_tag="Rpic_0478" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.972) with cleavage site probability 0.542 at residue 35" gene 512110..513846 /locus_tag="Rpic_0479" /db_xref="GeneID:6288439" CDS 512110..513846 /locus_tag="Rpic_0479" /note="PFAM: O-antigen polymerase; KEGG: rso:RSc0559 hypothetical protein" /codon_start=1 /transl_table=11 /product="O-antigen polymerase" /protein_id="YP_001898066.1" /db_xref="GI:187927579" /db_xref="InterPro:IPR007016" /db_xref="GeneID:6288439" /translation="MPQSRFLLWPLWFFAAVCFSAPFLVAPHTYPIPTFYAESASAWC WIAFSLVVLGLSWRGRASSPSIALAPLALIVVLIVQLGIATPLNPFFSFAACICLLAA MVVCGLGARCREMPGVLEAVAVGTILGGLATVAVEQVHLWRLVGIPDILIGLPPTGLG RRMWGNLNQPNHVASYFAFGLAACLFLWQRVRSLGLRILLGIVVLAFLFGTALSVSRV AWLHLIAVGLFAGWSWASQTTGRRRWFVFVTPVLALTIAYQLCNWLMDYGNVLWQWGL PTSLGERMQQGAGLRPLLWNHAWHMFIAHPWLGAGWGDYAWNQYVQTDVLGHVEMSMN AHNIVLDLLAKVGLAGLFAVVLPAVGLISLLWKFRMTPPAAFLWSVVAVLTIHSMLEY PLYYLYFLLPFAFALGYLDTRMLRFPSPSMTWVLSGVIVVCVSALSARMWIDYKSVER LYYAPAGLSKELPVYQASGQMLLVPYATLAIAINSGITYEMAAVMAALERQATQFYPG AATSQRYALTLAFQGKTEEAVTQVRRLHNQYWTDYAAQSSLLTQSCLQKADDLKVFCD RLKSEGLLVGVN" sig_peptide 512110..512172 /locus_tag="Rpic_0479" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.803) with cleavage site probability 0.683 at residue 21" gene 514033..514557 /locus_tag="Rpic_0480" /db_xref="GeneID:6288440" CDS 514033..514557 /locus_tag="Rpic_0480" /note="KEGG: bte:BTH_I0649 pilin (bacterial filament) subfamily" /codon_start=1 /transl_table=11 /product="pilin subfamily protein" /protein_id="YP_001898067.1" /db_xref="GI:187927580" /db_xref="InterPro:IPR001082" /db_xref="InterPro:IPR001120" /db_xref="InterPro:IPR002416" /db_xref="InterPro:IPR012902" /db_xref="GeneID:6288440" /translation="MQLHYQYNGRHQRGFTLIELMIVVAIVGILAAIAVPAYQDYVTR ARVSEGLALAASAKTTVAENASAGVPFDEGFAADTKATRYVQAKGIVISQKTGEIQIK YTDSVAKDGENVLLLKPTTYDEAMSGSSASSVRPTGPIRWDCYAKGAAVRAGTAELET KPSLATNVAPAECR" gene complement(514604..515080) /gene="moaC" /locus_tag="Rpic_0481" /db_xref="GeneID:6289116" CDS complement(514604..515080) /gene="moaC" /locus_tag="Rpic_0481" /note="MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis" /codon_start=1 /transl_table=11 /product="molybdenum cofactor biosynthesis protein C" /protein_id="YP_001898068.1" /db_xref="GI:187927581" /db_xref="InterPro:IPR002820" /db_xref="GeneID:6289116" /translation="MSQLTHFDSAGQAHMVDVGDKAVTHRVAVATGTIRMLPETFALV RDGNAKKGDVLGIARVAAIQGSKRTSDLIPLCHPLALTKVAVEFELNEAGHSVRCTVR AETRGQTGVEMEALTAVQVGLLTIYDMCKAVDRGMVIGDVRLMEKRGGKSGDWVAD" gene 515186..516895 /locus_tag="Rpic_0482" /db_xref="GeneID:6289117" CDS 515186..516895 /locus_tag="Rpic_0482" /note="PFAM: peptidase M48 Ste24p; Tetratricopeptide TPR_2 repeat protein; KEGG: rso:RSc0561 hypothetical signal peptide protein" /codon_start=1 /transl_table=11 /product="peptidase M48 Ste24p" /protein_id="YP_001898069.1" /db_xref="GI:187927582" /db_xref="InterPro:IPR001915" /db_xref="InterPro:IPR006025" /db_xref="InterPro:IPR013105" /db_xref="GeneID:6289117" /translation="MTLSLFRPRVRKLTAAVLLSTWLAPLPLPVLAQAVAVASSPPAS VNPGLGSAAAADQVQSNLNRSVQIGRQSPYLPKEPTVIDAPTYELPDMGDPSTASLSP EMERRLGDRVMRQIRRDPDFVPDPLITDYLNTIGYKLIEAARRQHVAGSTSASSFELF AVRDPGINAFALPGGYIGVNTGTLVATDSESELASVLGHEIGHVLQRHIARGIDKSGE SMWIALASILLAGLAATKSGDAAQALAMGGQAAAVSNQLAFSRGAEREADRVGFTLLT GAGYNPDGMPDFFRRLQRVTNIADTGVIPGYARTHPLTGERIADMEDRARGLPHPRQP RRPEFGFAKVRARVLQETSTSAYIDVRNAMRSQLSSTPDAPVEKRAALWYGVAVANQM AGRLDDAEQALQEARRLYGNIPGITSGSVELDVTAIELARARNRAPEALTLARAALAA YPLSRAVGITYAQTLLSAGRTDDAIPYLKDKTREDTAQPIWWDMLARAYADKGRRVEQ HRALAEKYARDGAWGSAVEQLKLARDAGDADFYTLSEVDARLHQMERQYREEKAEDKA LPK" sig_peptide 515186..515284 /locus_tag="Rpic_0482" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.945 at residue 33" gene complement(516916..517497) /locus_tag="Rpic_0483" /db_xref="GeneID:6289118" CDS complement(516916..517497) /locus_tag="Rpic_0483" /note="KEGG: rso:RSc0562 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898070.1" /db_xref="GI:187927583" /db_xref="GeneID:6289118" /translation="MDDIVRQAMAKWPNVPNCFGWLALDRRGQWRMRNEYAQANKLSG EPIRHTALIDFIVRNYAHDDTGRWFFQNGPQRVFVELDYTPWVARLSADCAPAAFTTT TGAAFSPSGCFVDEHGSVLLSGRVGGCEAEETIAVLHDHDLEPFSSLAQWHADACGAA LGTLTLGDQAFDIEPIARAEVAKRYGFVARPAE" gene complement(517490..518566) /locus_tag="Rpic_0484" /db_xref="GeneID:6289119" CDS complement(517490..518566) /locus_tag="Rpic_0484" /note="PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc0563 hypothetical protein" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold" /protein_id="YP_001898071.1" /db_xref="GI:187927584" /db_xref="InterPro:IPR000073" /db_xref="GeneID:6289119" /translation="MTHPSRHATPFELNLGALLAGPFEPHAFRSPWWLIGGNAQTIVP ARLWRFPRIAYRRERWDTPDHDFIDLDWTTHETDAHAPLVVMFHGLEGDSRSHYARLL MDALRARRWQGVIPHFRGCSGEMNLAPRMYHCGDGAEIAWILERLYRTVCQPQSRKLL VVGISLGGNALLRYLGEHGTDARYVSAAATVSAPLDMRAGGAALSKGFNMVYTRMFLR TLKDKANAKLDQHPGLYDRAAMMATRTLGQFDNLVTAPLHGFRDVLDYWTRASSKPVL REVRVPVLVLNARNDPFLPGQHLPGMADVSPDITLDQPLHGGHVGFLLRHGKTGRVDW MPARVLRFFDDVLGHQANAEDAHG" gene complement(518601..519041) /locus_tag="Rpic_0485" /db_xref="GeneID:6288154" CDS complement(518601..519041) /locus_tag="Rpic_0485" /note="KEGG: rso:RSc0564 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898072.1" /db_xref="GI:187927585" /db_xref="GeneID:6288154" /translation="MPRFARLFEAAEDILEAYRDALKRRDADGALKLWLDEDSVSFIL PDGQRLHGHEQLRGCLDALVEKNPVWIECLSQQVHSSLGVSIFEATEALRFSATATEA DLYVHTTYVLMQNHEGWRIAHVHSSQAAEERVAASIASVTHSLH" gene complement(519067..520092) /locus_tag="Rpic_0486" /db_xref="GeneID:6288155" CDS complement(519067..520092) /locus_tag="Rpic_0486" /note="TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: rso:RSc0565 probable ADP-heptose--lipopolysaccharide heptosyltransferase II protein" /codon_start=1 /transl_table=11 /product="lipopolysaccharide heptosyltransferase II" /protein_id="YP_001898073.1" /db_xref="GI:187927586" /db_xref="InterPro:IPR002201" /db_xref="InterPro:IPR011910" /db_xref="GeneID:6288155" /translation="MMRKILVVAPNWIGDALMAQPLFAQLKARHPRAQIHAIAPKWVA PVLARMPEIARVLPTELAHGKLQLGSRTMFAQQLKGETFDAAYVLPNSFKSALIPWLA GIPLRIGYKGESRLGVLNVRYPNPPKNARPPMVQHYAALAFKPHAKLPDTLPDPKLDV DVQRVAATSAKFGIPGNARLIAFCPGAEYGPAKRWPAEHFAELAQMLRRSFPYAQIVA LGSGKDREMANAIVERAPFVRNLCGETSLDEAIELLARAEAAICNDSGLMHVTAALGR PQVAVFGSSDPRHTPPLSPAASIMWLHLECSPCFARECPLGHLRCLRDIGPEMVFHEL RRLLQPQ" gene complement(520142..520339) /locus_tag="Rpic_0487" /db_xref="GeneID:6288156" CDS complement(520142..520339) /locus_tag="Rpic_0487" /note="KEGG: rso:RSc0566 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898074.1" /db_xref="GI:187927587" /db_xref="GeneID:6288156" /translation="MTTQTAPTIEIGADDLPLHCPTAKTPAWNYHPRVFLDIADTGEA KCPYCGTVYKLAPGVELKGHH" gene 520667..521461 /locus_tag="Rpic_0488" /db_xref="GeneID:6288157" CDS 520667..521461 /locus_tag="Rpic_0488" /note="PFAM: AzlC family protein; KEGG: rso:RSc0568 hypothetical protein" /codon_start=1 /transl_table=11 /product="AzlC family protein" /protein_id="YP_001898075.1" /db_xref="GI:187927588" /db_xref="InterPro:IPR011606" /db_xref="GeneID:6288157" /translation="MALVRWAAALQRRWAAIDPAERAGFFAGVRAYMPSMPPVLAWGL VTGVAMSKSVLTIPQAIGMTIFVYAGSSQLAVLPLLAAGLPIWTALLTAFIVNVRFII FSAGLMQHFGHLPFMRRVVLGVFNGDLPFVLFTQQYPSAAPQAGKEGYYWGMVLLSFV GWQVSSILGIVAASLFPDAWGLALAGTLALIPVMVSTIRSRATLMAVAVAAVLALVAF KLPYRLSLVIAVTGAMAAGLAADEVAARLQWQRRRAAHVAIDEDDA" gene 521458..521781 /locus_tag="Rpic_0489" /db_xref="GeneID:6288366" CDS 521458..521781 /locus_tag="Rpic_0489" /note="PFAM: branched-chain amino acid transport; KEGG: rso:RSc0569 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="branched-chain amino acid transport" /protein_id="YP_001898076.1" /db_xref="GI:187927589" /db_xref="InterPro:IPR008407" /db_xref="GeneID:6288366" /translation="MSALEIWLVIAGMTVVTIVTRSLFLIVGNRMTLPTRVQHALRFA PAAALVAIVLPDLLWNHGHFDASWTNPRLMAGIAATAFYVATRRMLGMIFVGMGVFTV LRLWG" gene 521784..522680 /locus_tag="Rpic_0490" /db_xref="GeneID:6288367" CDS 521784..522680 /locus_tag="Rpic_0490" /note="TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc0570 hypothetical protein" /codon_start=1 /transl_table=11 /product="RarD protein, DMT superfamily transporter" /protein_id="YP_001898077.1" /db_xref="GI:187927590" /db_xref="InterPro:IPR000620" /db_xref="InterPro:IPR004626" /db_xref="GeneID:6288367" /translation="MSASNRNGVIFAFLAYTMWGLFPLYFKLLKAVSPVEILSHRVIW SLAVMVVILLAKRHGAWLWALRTQPRVVGRYAVSTSLLAANWLTYIWAVNHDHVLEAS LGYFINPLVVVMLAALVLGERLRPVQWVSVALAAAGVSWLTWQAGTLPWIALALAFSF GFYGLLRKTSPLGALEGLTLETLLLFPLALAYLGWLASQHQNAFLAASPGTQWLLALA GPLTALPLLLFGAGARRIPLSLLGLLQYVSPTLQLLLGVWLYNEPFAGPKVAGYVLIW AGLAVYSAESWMQLRRRTPLPA" gene 522800..524011 /gene="pgk" /locus_tag="Rpic_0491" /db_xref="GeneID:6288368" CDS 522800..524011 /gene="pgk" /locus_tag="Rpic_0491" /EC_number="2.7.2.3" /note="Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway" /codon_start=1 /transl_table=11 /product="phosphoglycerate kinase" /protein_id="YP_001898078.1" /db_xref="GI:187927591" /db_xref="InterPro:IPR001576" /db_xref="InterPro:IPR015911" /db_xref="GeneID:6288368" /translation="MPHVLRLSDLISEGKLAGKRVFIRADLNVPQDDAGNITEDTRIR ASVPAVKAALDAGAAVMVTSHLGRPTEGEFKPEDSLAPVAKRLSELLGRDVKLVQNWV DGVEVAPGQVVLLENCRVNKGEKKNSDELAQKMAKLCDVYVNDAFGTAHRAEATTHGI AKFAPIACAGPLLAAELDALGKALGQPARPLVAIVAGSKVSTKLTILKSLADKVDNLI VGGGIANTFMLAAGLKIGKSLAEADLVGDAKAIIEMLAARGASVPIPVDVVCAKEFSA TAAATVKDVADVADDDMILDIGPKTAAQLAEQLKTAGTIVWNGPVGVFEFDQFGNGTK VLAEAIAASSGFSIAGGGDTLAAIAKYNIADKVGYISTGGGAFLEFLEGKTLPAVEIL EQRAQNQAAGA" gene 524061..525500 /locus_tag="Rpic_0492" /db_xref="GeneID:6288369" CDS 524061..525500 /locus_tag="Rpic_0492" /EC_number="2.7.1.40" /note="catalyzes the formation of phosphoenolpyruvate from pyruvate" /codon_start=1 /transl_table=11 /product="pyruvate kinase" /protein_id="YP_001898079.1" /db_xref="GI:187927592" /db_xref="InterPro:IPR001697" /db_xref="InterPro:IPR015793" /db_xref="InterPro:IPR015794" /db_xref="GeneID:6288369" /translation="MTRATKIVATLGPASSTQEVLTRMIAAGVDVVRLNFSHGAAQDH IDRAKLVREVARSVGREVAIMADLQGPKIRVGKFENGKITLEPGDRFTLDARCELGNQ ERVGLDYKELPRDVGPGDLLLLNDGLIVLQVERVVGEEIETIVKIGGDLSNNKGINRQ GGGLSAPALTAKDMEDIKTAMALGADYVAVSFPKNATDMEMARQLAAVAGAPHSHKTR MIAKIERAEAIRPGVLEEILAASDGIMVARGDLAVEVGNAAVPALQKRMIKLARENNK LAITATQMMESMIVNPVPTRAEVSDVANAVLDGTDAVMLSAETAAGRYPVETIEAMAA ICVEAEKSQTVHLDADFLDQTFSRIDQSIAMGALFTAHHLQVKAIAALTDSGATALWM SRHGINIPIYAMTPNVASQRKMALYRNVQSLPLANSADRDEALHQAEELLVARGVVQR GDFIVLTVGEPMGQAGGTNTLKIVRVGMH" gene 525588..526652 /locus_tag="Rpic_0493" /db_xref="GeneID:6288864" CDS 525588..526652 /locus_tag="Rpic_0493" /EC_number="4.1.2.13" /note="class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis" /codon_start=1 /transl_table=11 /product="fructose-1,6-bisphosphate aldolase" /protein_id="YP_001898080.1" /db_xref="GI:187927593" /db_xref="InterPro:IPR000771" /db_xref="InterPro:IPR006412" /db_xref="GeneID:6288864" /translation="MPLVSMRQLLDHAAENGYGLPAFNVNNLEQVQAVMEAAKEAGAP VILQASAGARKYAGESFIKHLIQAAVEAYPEIPLVMHQDHGQSPAICQGAIDLGFGSV MMDGSLREDGKTPADFDYNVDVTRRVVEMAHKVGVTVEGELGCLGSLETGMAGEEDGH GAEGKLDHSSLLTDPEEAAQFVKATQLDALAIAIGTSHGAYKFTRKPTGDILAISRVK EIHARIPNTHLVMHGSSSVPQELLAIINQYGGKMKETYGVPVEEIQEAIKYGVRKINI DTDIRLAMTGAVRKFLAENPDKFDAREWLKPAREAAKQICKARYIQFGCEGQAGKIKP IGLSVMAQKYQSGDLAQVVQ" gene 526789..527712 /locus_tag="Rpic_0494" /db_xref="GeneID:6288865" CDS 526789..527712 /locus_tag="Rpic_0494" /EC_number="6.3.2.6" /note="catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazole-succinocarboxamide synthase" /protein_id="YP_001898081.1" /db_xref="GI:187927594" /db_xref="InterPro:IPR001636" /db_xref="GeneID:6288865" /translation="MSATPASSALYESSITSLPLLGRGKVRENYAVGDDKLLMVTTDR LSAFDVILGQPIPDKGRVLAQMSDFWFNKLRHIVPTHETGIAPETVVAPNEVDQVRGR AIVVKRLKPILVEAVVRGYLAGSGWKDYQATGAVCGVHLAPGLQNAQKLPEPIFTPAA KAEMGEHDENISFDEVERRIGPDLAAQIRDVSIRLYKEASDFAATRGIIIADTKFEFG LDENGTLTLMDEALTADSSRFWPADSYQVGTNPPSFDKQFVRDWLEAVRIDGKPWPKT APAPQLPADVIEKTADKYREALTRLTGESLR" gene 527728..528237 /locus_tag="Rpic_0495" /db_xref="GeneID:6288866" CDS 527728..528237 /locus_tag="Rpic_0495" /EC_number="4.1.1.21" /note="KEGG: rso:RSc0575 probable phosphoribosylaminoimidazole carboxylase catalytic subunit protein; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazole carboxylase, catalytic subunit" /protein_id="YP_001898082.1" /db_xref="GI:187927595" /db_xref="InterPro:IPR000031" /db_xref="GeneID:6288866" /translation="MTAQQSAPLVGVVMGSSSDWEVMRHAVDMLTQFGIPFEAQVVSA HRMPDDMFRYAEAARSRGLRAIIAGAGGAAHLPGMIAAKTIVPVFGVPVPSKYLRGED SLLSIVQMPKGIPVSTFAIGEAGAANAALAAIATIATTDSALADKLEAFRAQQTEVAR GMTLPVHGA" gene 528257..529492 /locus_tag="Rpic_0496" /db_xref="GeneID:6288867" CDS 528257..529492 /locus_tag="Rpic_0496" /EC_number="4.1.1.21" /note="With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazole carboxylase ATPase subunit" /protein_id="YP_001898083.1" /db_xref="GI:187927596" /db_xref="InterPro:IPR003135" /db_xref="InterPro:IPR005875" /db_xref="InterPro:IPR011761" /db_xref="GeneID:6288867" /translation="MADDLNPRLAQAHTAESRALNVPNAILPDAWLGMLGGGQLGRMF THAAQAMGYKVCVLDPDPNSPAGTIAERHLCAGYTDEAALAEMAALCPAVTTEFENVP AQALDKLEQLGAFVAPRANCVSIAQNRIAEKKFFALCAARTGIHPAPSWVIEHEADIE QLPADLLPGILKIARMGYDGKGQARVSTIEELRAAWGAMQHVPCVLEKMLPLAYEVSV LAARGADGSTATWPLAENVHRDGILFSTIMPSRSVSDDIATRTRAAAAMIAEEMGYVG VLCIEFFVLQDGSLVANEMAPRPHNSGHITMDVCETSQFEQQVRAMARLPLGSTRQHS PGRMLNVLGDVWFEYGLERTPAWHEVMGHSGAKVHLYGKADARPGRKMGHVNCVGTSP EVVDEAFRHAAHVLGLQSD" gene 529506..530519 /locus_tag="Rpic_0497" /db_xref="GeneID:6289120" CDS 529506..530519 /locus_tag="Rpic_0497" /note="TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: rso:RSc0577 hypothetical protein" /codon_start=1 /transl_table=11 /product="Sua5/YciO/YrdC/YwlC family protein" /protein_id="YP_001898084.1" /db_xref="GI:187927597" /db_xref="InterPro:IPR004388" /db_xref="InterPro:IPR005145" /db_xref="InterPro:IPR006070" /db_xref="GeneID:6289120" /translation="MPHRTTSPYTMPSAERLDEAARRLEAGELVAFPTETVYGLGADA ESPSAIAKIYAAKGRPSNHPVIVHVVDGADISYWADDVPGIALQLIEAFWPGPLTLIL KRAPHIPAAVAGGQDSIGLRCPSHPVAQALLSRFKRGRGGIAAPSANKFGQVSPTTAQ HVRDEFGDAVFVLEGDGVDVGIESTIIDLSRLDQGIGPVLLRPGAITPEDIERVTGEL PAAPDAAAPRASGTLKAHYAPRTPLYLLSAADVSARLAALPADKRIVWLGAPVALRDG CDQRVAPATPAAYANALYALLRELDRGGYDAIWVETLADTPAWAAVNDRLRRAAAAFE TDL" gene 530665..531708 /locus_tag="Rpic_0498" /db_xref="GeneID:6289121" CDS 530665..531708 /locus_tag="Rpic_0498" /note="PFAM: lipolytic protein G-D-S-L family; KEGG: rso:RSc0580 putative lipase / esterase protein" /codon_start=1 /transl_table=11 /product="lipolytic protein G-D-S-L family" /protein_id="YP_001898085.1" /db_xref="GI:187927598" /db_xref="InterPro:IPR001087" /db_xref="InterPro:IPR008265" /db_xref="GeneID:6289121" /translation="MKFRQWMGVVASATLALSLAACGGESDQSGNPNVAKVQRMVVFG DSLSDAGTYTPAAAAVGGGKFTTNPGPVWAETVAAQLGVALTPAVMGYANSVQNCPKP GCFDYAQGGSRVTDPNGIGHNGGAGALTYPVKQQLANFYAASNNTFNGNNDVVFVFGG NNDIFYWAAAVATPNSGVTPAIATAQVQQAATDLVGYVKDMVSKNATQLYVFNLPDSS LTPQGVAGGAAGQALLHALVGTFNTTLQAGLAGTGARVIDFNSQLTAVIQNGAMFGFS NTSVPACDATKINALVPGAGGSSLFCSANTLVTAGADTAYLFADGVHPTTGGHRLISS NVLQRLLADGVTH" sig_peptide 530665..530736 /locus_tag="Rpic_0498" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.924 at residue 24" gene complement(531983..532510) /locus_tag="Rpic_0499" /db_xref="GeneID:6289122" CDS complement(531983..532510) /locus_tag="Rpic_0499" /note="TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: rso:RSc0583 probable molybdopterin-guanine dinucleotide biosynthesis protein B" /codon_start=1 /transl_table=11 /product="molybdopterin-guanine dinucleotide biosynthesis protein B" /protein_id="YP_001898086.1" /db_xref="GI:187927599" /db_xref="InterPro:IPR004435" /db_xref="GeneID:6289122" /translation="MSSRKSLLGITGTSGSGKTTLVEQLIARFVHDGRRVAAIKHTHH GFDLDSPGKDSHRMREAGSAEVVLVGGERLVLMREYANALEPELDDVLALLSPATDLV IVEGYKRSTFPKIEVFRPSLGRQPLWPEIGGVVAVATDSPAAVQPPEGVAVLDLNDVD AVYRFAVQQLAKSAI" gene complement(532507..534045) /locus_tag="Rpic_0500" /db_xref="GeneID:6289123" CDS complement(532507..534045) /locus_tag="Rpic_0500" /EC_number="3.4.16.4" /note="KEGG: rso:RSc0584 probable D-alanyl-D-alanine carboxypeptidase signal peptide protein; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase" /protein_id="YP_001898087.1" /db_xref="GI:187927600" /db_xref="InterPro:IPR000667" /db_xref="GeneID:6289123" /translation="MARIRPTRLLTLSRSALACAVLLTIAASPLAHAKKAKTQAAPRT TAAQTRQAAHNPAGLPANVALAFARAHIPLDAVSVFVIRTGTATPILQWNADAGMNPA STMKLLTTFAGLDLLGPDFRWKTTAYADSAPVNGTLNGNLYLRGQGDPKLIPEELVKL VTDVRRAGVDELAGNIVLDRTYFEGDLSEAPPLDGDSARAYNVAPDALLYSFKTLTFT LSPDAGNGAVNIDVSPPLAQLQIDNQLRTTRGGCGDWKTTSGANISTQTDGHVIASFD GRYAAACGERVFNIAALTHADFIWGGFLALWQQAGGTTRFTPGLREGKVPRQAVLLAT HYGPPLSEVVHDIDKYSNNVMARQLFLTIGAEIGRKPASVRQSTEVINRWLAKQNLTM PELVLENGSGLSRTERISARNMGRLLQQADANPNGGVLRDALPVVGVDGTMRNRLTRA GVAGNAEIKTGTLNGVRAIAGYVEGEDGQRFVVVSMINHPNASGGQAAHDALLQWIYQ GAPR" sig_peptide complement(532507..532608) /locus_tag="Rpic_0500" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.984 at residue 34" gene complement(534186..536777) /locus_tag="Rpic_0501" /db_xref="GeneID:6288888" CDS complement(534186..536777) /locus_tag="Rpic_0501" /note="TIGRFAM: DNA ligase D; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: psb:Psyr_3245 ATP-dependent DNA ligase" /codon_start=1 /transl_table=11 /product="DNA ligase D" /protein_id="YP_001898088.1" /db_xref="GI:187927601" /db_xref="InterPro:IPR002755" /db_xref="InterPro:IPR012309" /db_xref="InterPro:IPR012310" /db_xref="InterPro:IPR014143" /db_xref="InterPro:IPR014144" /db_xref="InterPro:IPR014145" /db_xref="InterPro:IPR014146" /db_xref="GeneID:6288888" /translation="MPRHLADYRSKRDFTQTQEPAGARRKADEQRDHGALHFVIQKHD ATRLHYDFRLELDGTLKSWAVPKGPSLDPADKRLAVHVEDHPLDYADFEGHIPEGQYG GGDVIVWDRGTWRPHGDPRKAYRDGKLKFDLHGEKLHGAWALVRTHLHGTGRHPKEQW LLIKERDDQVRASSDYDVTQALPASVITGENVGAKPKAKADGRKTQRADPAQVQPPAG AVPGTLPKTLEPQLATLVDAPPRQGEWNYEVKFDGYRILARIDGNTVRLFSRNGRDWT AKLPRQARTLQALGLREAWLDGEVVVMGERGVPDFQALQNAFETAHAEHIAYYLFDIP FCNGMDLRGVPLRERRALLERILDAAPGNLDREAVLFSGTFHAAPEDLLSSACSMSLE GVIGKRADAPYRAGRSPAWIKLKCGQRQEFVIGGYSAPKGSRSGFGALLLGVYDDAGK LRYAGRVGTGFNETSLHALHHELTGLTVDTPPFANPPTGSDARDVQWVKPERVAEIAF AEWTREGIVRQAVFQGLRDDKLARNIVREQAKPPSAAARKETRAVNAAERKVRPGAER IADVDVTHPDRVIEKASGTTKADLARYYAGVAEWMLPHLRNRPTSLVRAPDGIDGERF FQKHSAALKLQGITQLDPSLDPGHPSLLAINSAEALVGAVQMGTVEFHTWNALADRIE QPDRIVFDIDPDPALPFARVIEATQLMLAMLDELGLKAFLKTSGGHGMHVVVLLTRRE AAGWDTLKTFAQAVVQHMAATFPDRFVAKMGPQNRVGKIFIDYLRNNRGASTVAAYSV RARTGLPVSVPIRHDELEGLQSSAQWTLRTLPERLAKLKGDPWAAYAGTRQSVTADMR KRVGADD" gene complement(536796..537710) /locus_tag="Rpic_0502" /db_xref="GeneID:6288889" CDS complement(536796..537710) /locus_tag="Rpic_0502" /note="TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: bxe:Bxe_A2329 putative membrane protein, Ku-domain" /codon_start=1 /transl_table=11 /product="Ku protein" /protein_id="YP_001898089.1" /db_xref="GI:187927602" /db_xref="InterPro:IPR006164" /db_xref="InterPro:IPR009187" /db_xref="GeneID:6288889" /translation="MPRVIWKGAVSFGLVHIPVALYPATRSDDLDFDWLDRRTMDRVG YKRINKTTGKEVPREQIVRGYAYEKDRYVILTDEDIRAANPASTQTVDLLTFVDAAEI PFLYLDTPYFLAPDRRGEKVYALLREALTRSQKIGVANVVLHTKQHLAALIPMGPVLV LHTLRWSNEVRDWSELDVPEEGAKAAKLTAKEIDMAEKLIDDMSGTWDPAEYHDTFRD DILALVDRKVREGRTESVEPMEAETAAPRSGNVIDLTDLLRQSLAKRGEGKDASNDKA QEEPAPRKRAPRKAASKTARKTTTRKRA" gene 537939..539048 /locus_tag="Rpic_0503" /db_xref="GeneID:6288890" CDS 537939..539048 /locus_tag="Rpic_0503" /note="PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc0585 putative transport transmembrane protein" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_001898090.1" /db_xref="GI:187927603" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:6288890" /translation="MALFFANGATFATWGIHIPTVKARFGLSEASLSLAMFMVAAGAI VAMKFAGQWAARVGTRRASVQGGVAFGVMTGLLMLMPSYPALLAVLLLFGITNAGFDV AINAQAATVEANHHKPIISSLHGMFSLGGMAGAAVGGVLLELGVPPAVHCGGMALVTM AAALCAGPFMLPDHVHAEGEPAHPTTGRTLFLLGVLAFLGLVGEGAMYDWTTVYMREI AQSPEAIASAGYAAFSGGMALARFSGDLARGRWGNKHVLGASGVLATGGILLALLWPA PMAVLTGFALMGVGAANMVPIFFITASRLSGVPAAEGIAAVARFAYVGLLIGPVIIGL IAHRSDLRWGLSVVALTMALIAVMGPRAIRQPERR" gene 539256..539645 /locus_tag="Rpic_0504" /db_xref="GeneID:6288891" CDS 539256..539645 /locus_tag="Rpic_0504" /note="KEGG: rso:RSc0586 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898091.1" /db_xref="GI:187927604" /db_xref="GeneID:6288891" /translation="MPYKRLTLVAAVAVVAAIGTVAHAQTDQKKFDPYSQGAKVGDKF DPYQQGAKAGDKFDPYSQGANKNDSTASALNPGAQPANVEKGKYDTYTQGAKAGEKFD PYSQGAKAGGKFDPYSEGANKKDAPKQ" sig_peptide 539256..539330 /locus_tag="Rpic_0504" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 25" gene 539650..540480 /locus_tag="Rpic_0505" /db_xref="GeneID:6289112" CDS 539650..540480 /locus_tag="Rpic_0505" /note="KEGG: rso:RSc0587 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898092.1" /db_xref="GI:187927605" /db_xref="GeneID:6289112" /translation="MLNGFMKTLMHHPMHRRFSLWNAAAAVAAIALAWPVHAAGLCSA PWVHDGSRVRLDGNGETPMIVEFTLHDVSRDMQDGCEIGLHIYAKSGLVALGGRPIET VQEHQLLVDEAGVVTRIVSINGRVFAQSEHADLVGTVSTAISGMFLYGAGLAPEAQML PGDTYESSFDFDVVSPRLGISVGRMRAERAKVEVSEREVGPPQPMNTVVGQLQCRPIR YTRTARLGVLRLGNETLEPDPTVAHITDWYCPEAAVVMRQEVEQHGQTQVIDVVELKR" sig_peptide 539650..539766 /locus_tag="Rpic_0505" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.984 at residue 39" gene complement(540470..541258) /locus_tag="Rpic_0506" /db_xref="GeneID:6289113" CDS complement(540470..541258) /locus_tag="Rpic_0506" /note="PFAM: protein of unknown function DUF1045; KEGG: reh:H16_B1290 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1045" /protein_id="YP_001898093.1" /db_xref="GI:187927606" /db_xref="InterPro:IPR009389" /db_xref="GeneID:6289113" /translation="MEQARAPLSSSIPAAWRYALYLLPPEPWYGLGTRWLGRCARTNT AISADQREAFACEAGIDLATLDRWTEAPRQYGLHATFKPPFRLATDRTVDELDAALRR FAQQQQAFAIEPALQTLRGFLAWRLRHGDPARDTLHQFADACVGEFDAFRAPPPPTEL ARRRRTGLSDAQERHLQRWGYPYVFDTFTFHVTLTGRLDHAEQLACYRALEATRMVLP AAMPIDHIALFSQAAPEAPFTVARVYRFDGSTEDFDAAQSALSA" gene complement(541267..542442) /locus_tag="Rpic_0507" /db_xref="GeneID:6289114" CDS complement(541267..542442) /locus_tag="Rpic_0507" /note="PFAM: amidohydrolase; Amidohydrolase 3; KEGG: reu:Reut_B4184 amidohydrolase:Amidohydrolase-like" /codon_start=1 /transl_table=11 /product="Amidohydrolase 3" /protein_id="YP_001898094.1" /db_xref="GI:187927607" /db_xref="InterPro:IPR006680" /db_xref="InterPro:IPR011550" /db_xref="InterPro:IPR013108" /db_xref="GeneID:6289114" /translation="MQSFSSSVGHVAGLISRRTLLAEGLAEAAVQFRDGQIAACDGNP TRGMIDCGDLLVLPGIVDLHGDAFERAVMPRPGVAFPYETALADVDGQLLACGITTEF HGVTYSWEGGLRGRAYAVRMLDTLDAMRPHLGAQHLMHLRFELHHADGVADALAWMDA GRVHFLSFNDHLPMMRDKLGDARKLAQYADRAECDIDTFLSRLHAAAVNATRLAEVTG TLARAAQQRGICMASHDEPDIATRNTFHAHGCTVTEFPLTEDVAQAARAHGGHIVFGA PNVVRGGSHHGAPNASAMVAAGLGTVLASDYYYPALLAAPFKLAERGVVPLAEAWALV AANPAEAAGLTDRGVLAPGLRADAIVVDDRRPGLPRVVAAVVGGRLRHAAGQLPLIG" gene 542583..545336 /locus_tag="Rpic_0508" /db_xref="GeneID:6289115" CDS 542583..545336 /locus_tag="Rpic_0508" /note="KEGG: rso:RSc0588 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold domain protein; SMART: PAS domain containing protein" /codon_start=1 /transl_table=11 /product="diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)" /protein_id="YP_001898095.1" /db_xref="GI:187927608" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR000700" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR003018" /db_xref="InterPro:IPR013767" /db_xref="GeneID:6289115" /translation="MVDILKKNPDMDATSAERPDRPGPDVIDQDSRRPLPLADDRYEA LVRQMPDALYIVADDIIVFVNEAGVRLFGAQTARDIVGHELDEFVHDNSMHLARQRRE WMVSHGAGLPPVEQTLLRCDGTPVEVEVLSAPVQLGWRTAIQVVARDITQRKQAEQAL RESEANYRALAAETARAKELLRCEKTVLELSSRNVPLPDLLAEVCRLVEALLDDGAMC SVLLSADGEHITQAVAPSLPCTLSQVLVGIAIGPSVGSCGTAMFLNKTVVVEDIDADP LWDGYRDIVAPLGLRACWSTPIRGDNAQMIGAMGIYYDTPRAPTRDAMGLLDGITDII GVAVQKAHIARDLRESEERYRLAVDNLTEGIVVQTADGTILACNPSARRILRAGSVSP VGTSHLALMRRSLREDGSEIPVNERPTRVVLATGRPLLGLTVGLELVDGDVVWVHENV LPIVRPGDNTPSAVLISFNDIGPARAAQQQLTFLAQRDALTGLYNRAYFSQRMQAVME QAASQANEGHQVAVLFLDLDGFKKVNDTAGHEAGDHLLRIVAQRLSACVRQSDTLARL GGDEFVVLLDNVRSLGEAERLAKRIVHSIAQPFSTSGTEYYLGASIGIALYPEHGNDA ATLLRCADAAMYNAKQNGRNQHRVYTARLSQRAQRRFQLEYHLRRALTAGELSLRFQP IVDATSMDIVGAEVLLRWHSTELGEVSPAEFIPVAEDAGLIGDIGEWVLAQACRQAAH WRATCMPEFFVAVNLSPRQFGEGLVPTISRCLTEAGLPASALEMEITEGLLMRDTAAV MPMLDALTALGIRISIDDFGTGYSSLSYLQRFPIDNLKVDRSFVSGIPRHRDSVVISR AVVAMAASLDMTVTAEGVETLEQAEFLQAAGCDKLQGFLFGPPMTAAAYESRLRRDRS ARA" gene 545486..546898 /locus_tag="Rpic_0509" /db_xref="GeneID:6287792" CDS 545486..546898 /locus_tag="Rpic_0509" /note="PFAM: chemotaxis sensory transducer; KEGG: bxe:Bxe_A1954 methyl-accepting chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_001898096.1" /db_xref="GI:187927609" /db_xref="InterPro:IPR004089" /db_xref="GeneID:6287792" /translation="MKPFAWGRGPKASPDLVARIAEEAGRVGMGICEVSGNVEDVAVR LRRQADVFDQLRNAADVTMRGNHDIAVAAQHARKVASHASEEVSGSRETVDASLRDIR ELAVGVASMEQQIAALREALIQVAQASEQISQIARQTNLLAINAAIEAARAGESGRSF AVVAGAVKQLAGQTAEATQRIETTLADLSGQTDKLIGDSSANVARAQRVDAGTQAIGA VIGVAGEAIARFDVEATSIAESTAAIEDECASLAREVEAMAEGVKQSSHNIDNAQRQL SGLLGASETLIRLTASTGVQSADTPFIEAVQTAAGKISALFESALARGDINEGDLFDR TYAPVPNTDPPQHMTRFTTFTDRVLPAVQEPLLQLDPRVVFCAAVDTNGYLPTHNLKF SQPQGSDPVLNAANSRNRRLFTDRTGLGAARNTEAFLLQTYRRDMGNGTFAMMKDVSA PIYVKGRHWGGFRMGYKVAG" gene complement(547462..548784) /locus_tag="Rpic_0510" /db_xref="GeneID:6287793" CDS complement(547462..548784) /locus_tag="Rpic_0510" /note="PFAM: major facilitator superfamily MFS_1; KEGG: rme:Rmet_1926 major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_001898097.1" /db_xref="GI:187927610" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:6287793" /translation="MSQTQALPANPTDPTSQSIPSTELDVTYRRIAYRLVPFLVVLFI LAWIDRVNVGFAKLSMLQDLQFSEAVYGLGAGIFFIGYFLFEVPSNLLLEKIGARKTL ARITILWGLASMAMIYVKTPTSFYVMRFLLGIFEAGFFPGVVLYLTYWFPSAHRARIN GLFMTSFAIAGVVGGPVAGFIMSRMEGVGHLANWQWLFLLEGIPSVLAGFAVLAWLPE TPRQAKWLSAAEQDAVVRAVEAENRDPAKHASFGAALANARVWVCAAIYFCVVSGNAT IAFWTPSIIKELGVQGNFQIGLISAIPFIAGTIAMVWNGAHSDRTGERRMHCAIAALI ASAGLVATGATLGSPFLALVSLTVAAIGILAAFPVFWSIPAVFLAGTAAAGGIALINS IGNLAGFVAPYMIGWLKTSTGHLSAGLYFVAALELGAAVLVILGTRKH" gene complement(548953..550311) /locus_tag="Rpic_0511" /db_xref="GeneID:6287794" CDS complement(548953..550311) /locus_tag="Rpic_0511" /note="catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia" /codon_start=1 /transl_table=11 /product="amidase" /protein_id="YP_001898098.1" /db_xref="GI:187927611" /db_xref="InterPro:IPR000120" /db_xref="GeneID:6287794" /translation="MMTPRPNMIRALAAELAAGRTTSIALTEAALERAESHRAAGGAA YVSIDVQAALAMARAADAARAAGNVPSLLAGLPVSIKDLFDVAGQVTAAGSRALADQP RATTDAAAVARLRAAGAVLLGRTNMSEFAFSGLGLNPHYGTPRTPADGARAAGGSTSG GAVTVAGGMAVAALGTDTGGSIRIPSAFCNLTGFKPTARRVPMTGGVPLSTSLDSGGP LANSVDCCAIVDAVLSGESGNDAFDTTAVPLAGLRFGITQDFVGADLDNTVAVAFERA VERLERAGAHIVRFEFPELLQLPEINSGGGFSAAESWAWHRSLLARAEVQYDPRVATR IRRGEQMSAAAYIDVINARARMIAAARKRLGNFDAWLMPTVAIVPPEVAPLEVDDAQF FRINALTLRNPSVINFLDGCALTLPVHVAGELPVGLSLCGLANDDARILRVGRAVEAA LR" gene complement(550339..551016) /locus_tag="Rpic_0512" /db_xref="GeneID:6287795" CDS complement(550339..551016) /locus_tag="Rpic_0512" /note="KEGG: rme:Rmet_1928 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898099.1" /db_xref="GI:187927612" /db_xref="GeneID:6287795" /translation="MTTLHLNLIGHGPIDVTVDHLVIAGWTGRDAEAVEHHIAELEAI GVARPARVPCFYRVSASLLTTDATVEIPGADSSGEAEFVLYSTPMGLLVGIGSDHTDR KVEAYGVTVSKQMCAKPVSRDVWRFEALADHWDSLQMKTWRTRDGQTALYQEGGVTRM LDPRDLIRRYTGNDTLQVGTAMFCGTQPIIGELGFGEAFDMALIDPVSGTELRHRYAV DTLPVEG" gene complement(551062..551778) /locus_tag="Rpic_0513" /db_xref="GeneID:6287249" CDS complement(551062..551778) /locus_tag="Rpic_0513" /note="PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rme:Rmet_1929 transcriptional regulator, GntR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, GntR family" /protein_id="YP_001898100.1" /db_xref="GI:187927613" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011711" /db_xref="GeneID:6287249" /translation="MSRPIKLVSGAAKPAPAPFAVEPAAHAPKGAAMRELAYNEIKRR IMACEFRPGEPLNEAQLGALLGLGRTPIHQALHRLEVEGLVQILPRKGVLVTPLSLND VLDMIEVRATNEILCVTLAAERAHPADFEAMRAIVEASPALIEHRDIAALAALDLKFH LAISAASRNRVLAELLRGLHEKQARFWFLSLSEPQHLQNVYDEHLAVLDALERRDVPA AREAIREHIDEFRRTIIRTL" gene 551954..553219 /locus_tag="Rpic_0514" /db_xref="GeneID:6287250" CDS 551954..553219 /locus_tag="Rpic_0514" /note="PFAM: monooxygenase FAD-binding; KEGG: reh:H16_A0578 2-polyprenyl-6-methoxyphenol hydroxylase or related FAD-dependent oxidoreductase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898101.1" /db_xref="GI:187927614" /db_xref="InterPro:IPR002938" /db_xref="InterPro:IPR003042" /db_xref="GeneID:6287250" /translation="MKIAVIGAGIGGLTLALMAERQGFEVEVWEAVQTLRPLGVGINL LPHAARQLCELGLEDTLSALAIRTSALAYYNRFGQPIWHEPRGLAAGYDWPQFSIHRG EFQMTLADAVIERLGAGCIRLGHSFEAVQSTGEKGGPVRFTLRDRSNDTVVESSADVL IGADGIHSAVRRHFYPTGDAPRFAGRMLWRAVTDAAPYLDGRTMFMAGHQDQKFVAYP ISEPLRQQGRSRINWIAELRVPDEAPPRSDWNREVDRAIFRSAFADWKWDWIDIPALI DGAQAVYEFPLVDKDPLPRWTFGRVTLLGDAAHPMYPIGSNGSAQAILDARALVDCLL ATRDTGVALREYEADRLPRTAGIVLRNRLNGPEQVMQLAHERAPQGFARIDDVIPRSE LEGIAMRYKKLAGFDPQSLRDQLPMPRRA" sig_peptide 551954..552013 /locus_tag="Rpic_0514" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.864) with cleavage site probability 0.837 at residue 20" gene 553265..554398 /locus_tag="Rpic_0515" /db_xref="GeneID:6287251" CDS 553265..554398 /locus_tag="Rpic_0515" /note="PFAM: Extracellular ligand-binding receptor; KEGG: reh:H16_A0577 ABC-type transporter, periplasmic component: HAAT family" /codon_start=1 /transl_table=11 /product="Extracellular ligand-binding receptor" /protein_id="YP_001898102.1" /db_xref="GI:187927615" /db_xref="InterPro:IPR001828" /db_xref="GeneID:6287251" /translation="MTIRRTLCAAAALLLATAAHAEIVVGVSLSTTGPSASLGITQKN SLAFYPDTIGGEKLRLVVVDDASDPSTGTRLARKLVTEDHVDIIVGSSAVAPSIAIAE VATESHTPQLALAPVELKPGKGDWTYRLAQPISLMAEAIATRMEASGVKNVGFIGFAD AYGESWLKDFTAAATPRGIKIVDVERYARADTSVTGQVAKLVSIKPDAILVAGAGTGA ALPHTALRDRGYAGPIYQTHGAATKDLIRIGGKAVDGAILPAGPVIVAEQLPDSHPSK KTALEYVTRYEKANGPDTRTQFGAHTWDALQVLQRIVPVALKKAKPGTSEFRQALKNA LESEHDIVVSHGVLNYTATDHFGFDARGRVLLTIDHGKWKLLN" sig_peptide 553265..553330 /locus_tag="Rpic_0515" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 22" gene 554472..554987 /locus_tag="Rpic_0516" /db_xref="GeneID:6287252" CDS 554472..554987 /locus_tag="Rpic_0516" /note="PFAM: regulatory protein MarR; KEGG: rso:RSc0590 putative transcription regulator protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_001898103.1" /db_xref="GI:187927616" /db_xref="InterPro:IPR000835" /db_xref="GeneID:6287252" /translation="MPRTPKADDLYPAVAPSGHFNPHLADVEYGALDGLVGYAVRRAQ LHIYEDFVRSLQTWHITPPRFSAMTVIAHNPNLKLTELANILGVARSGAVLLVDTLED MGMVERQPSPKDKRAFRLVLTAKGATTLDDITRAVTAHDARVTAHLSTDERYTLLALL NKLASGPDSAS" gene complement(555070..555411) /locus_tag="Rpic_0517" /db_xref="GeneID:6287700" CDS complement(555070..555411) /locus_tag="Rpic_0517" /note="KEGG: rso:RSc0591 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898104.1" /db_xref="GI:187927617" /db_xref="GeneID:6287700" /translation="MTQDPTTQRKQQNDDDFALTRDAIRWLASLPDPVRPIELGRKFP RIINTIAVKWADFIGCRRYLNSLQIDERGGRQGFPFEIVQEICALREYFDSLYPPDKD LWQKAIDANKR" gene 555755..556975 /locus_tag="Rpic_0518" /db_xref="GeneID:6287701" CDS 555755..556975 /locus_tag="Rpic_0518" /note="KEGG: rso:RSc0592 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_001898105.1" /db_xref="GI:187927618" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR006674" /db_xref="InterPro:IPR006675" /db_xref="GeneID:6287701" /translation="MKRIDASQLRVGMFVMKLGGSWLKHPFWRAQFQLSHQGQIDDIR RAGITEIWIDPERGEDVMSETLMPAPAPAPAPAPEPLTRETLAARPPLTPTSLKEEWK HAQQLMQNGKATLGHMFAEARMGRALETEKALLLVDDVSNSLARNSYALIALARLKNK DDYTYLHSFAVCALMVALAKTLGLPEDEIRECGLGGLVHDIGKSAMPRTLLDKSTALT KDELALLQTHAVGGHHLLQGTGQFSEIAREICLHHHERIDGSGYPDAQKADGISLWAK MGAICDVYDTLTSSSPYHHAWSPAQALKYMMARTDTQFDRTVFQAFTRSVGIYPVGTL VKLRTNRLGVVVHQNDASALKPDVVVFYSGNTKTRVRPERISLGKSDDSIVTVEDATT WGLSDEEVSDMCLV" gene complement(556993..557154) /locus_tag="Rpic_0519" /db_xref="GeneID:6287702" CDS complement(556993..557154) /locus_tag="Rpic_0519" /note="KEGG: ani:AN0757.2 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898106.1" /db_xref="GI:187927619" /db_xref="GeneID:6287702" /translation="MPTQPRRSETDTTQPASPKAQPEPAKRKPGEPLVPRDTRPNPAE QKEPPVEDF" gene 557384..558370 /locus_tag="Rpic_0520" /db_xref="GeneID:6287703" CDS 557384..558370 /locus_tag="Rpic_0520" /note="KEGG: rso:RSc0593 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898107.1" /db_xref="GI:187927620" /db_xref="GeneID:6287703" /translation="MNVSNLLHAASNWVVRSRAFNVTQSVAHHRTPSDALSHWKLDIW HKSVPFLFEGGLAEPAHQLFPKHLAHAEWVDELHHHLAQLVGVRREHRKIDIRAVTGL AQSPCSVHSFPSMLVFAHQHCRRIPHSTDADFAANRRHVFRYADQANVFRAYDFAGGE LFYMNEWGAHHFAALALQARTQNRELLIDAEVRHARSALGLRRLLDGFYVIGARRQGQ QRYGTRLSEALASHQVPHRWMHGRREAEGFELCFLPKSDRFANCVGEQLVRDGWFDYG AWLASLHDATEVGAPAQRAEAARKTRSNWKRVPVPSLGVPTGLMPGFAHTRL" gene 558476..558892 /locus_tag="Rpic_0521" /db_xref="GeneID:6286657" CDS 558476..558892 /locus_tag="Rpic_0521" /note="KEGG: rso:RSc0594 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898108.1" /db_xref="GI:187927621" /db_xref="GeneID:6286657" /translation="MSGDIVRRHLRPTLRSFRSSFLHPRWLACLLAVFLLFGQQGALR HALSHWSEFGEAAGVEFNAAATAKPASAERSQPAQEHAACLQCAAYAALAAALPMLVA LRLAHTRRWHFPRIGFHAGAPVFPVAVCSRDPPFRL" sig_peptide 558476..558592 /locus_tag="Rpic_0521" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.652) with cleavage site probability 0.198 at residue 39" gene 558979..561162 /locus_tag="Rpic_0522" /db_xref="GeneID:6286658" CDS 558979..561162 /locus_tag="Rpic_0522" /note="PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RSc0595 putative outer membrane receptor signal peptide protein" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor" /protein_id="YP_001898109.1" /db_xref="GI:187927622" /db_xref="InterPro:IPR000531" /db_xref="InterPro:IPR012910" /db_xref="GeneID:6286658" /translation="MIPFQPSKLVMALAAVLPSVASVSALAQEATPPAAAPSTPTTTA PATNVRDLSETRVTAKRLDAARNALSPDTGSSVYKFDTDDIARLPLGDATPLNQVLLQ APGVVQDSYGQLHVRGDHSNLQYRINGVIVPEPISGFGQMLDTRFANQINVLTGALPA QYGYRTAGIVDITTKGASTDEDGEPKAFGGEIGTVLGSNATHEVNAQIQGTKDRFSYY LSGVFAENNLGIENPTGNRNATHDHTTQNKSFGMLSYLLDNDSRVSFMFGTSNGRFQI PTRPGLTPKFTLDGAVPPASEALNANQREKTDFQILTYQQKVSPKLDYQVSVFRRVSR IDYMPDPIGDLVYNGVAADITRRNEAYGVQGDASYKLTDKHTLRAGVFVQRERYVANN TASVFAADDSGAQTSTTPFTIVDNHSGSGTTLGVYLQDEWKPTDKLTVNYGARYDRVN TIVSEQQLSPRLGLTYDLTPRTRVHAGYARYFTPPPTEKFDTTSVQAFAGTTNALPSD ANTAVKSERSNYFDLGISHQLTPHLTLGLDAYYRDVRHLQDEGQFGNALLYSAFNYER GRIYGLEGSANYRNGNFGAYLNLAVSRAQGKGIETGQFNFGANELAYINSHWVNLDHD QRLTASAGVSYRYSGTTYTSDVLFGTGLRNGFVNTDHLPAYWQMNVGAARDFNLPTLG KFKTRLTVLNIFDRSYQLRDGTGIGVGAPQFAPRRTFLLSVSKPF" sig_peptide 558979..559062 /locus_tag="Rpic_0522" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 28" gene complement(561217..561849) /locus_tag="Rpic_0523" /db_xref="GeneID:6286659" CDS complement(561217..561849) /locus_tag="Rpic_0523" /note="KEGG: bja:bll7411 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898110.1" /db_xref="GI:187927623" /db_xref="GeneID:6286659" /translation="MTRLRFSARTAAVVALVTAVLPLAASAQNTAAPTRVRATINAVH STAVDVTDTSGNKATVTLPVDLNITQVAPIEPSAIRAGSYIGTAAVKEPDGTLRALEV HVFPEAMRGTGDGHRPYDLGPNSSMTNGTVEQAGAVTGAQGRTLSVKYKDGEQRIVVP PQVPIVTFEPGRRDDLKAGAHVVMFVRADAQGTLVAQRVLVGKDGMVPPM" sig_peptide complement(561217..561300) /locus_tag="Rpic_0523" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.959 at residue 28" gene complement(561985..562572) /locus_tag="Rpic_0524" /db_xref="GeneID:6286660" CDS complement(561985..562572) /locus_tag="Rpic_0524" /note="KEGG: bcn:Bcen_1390 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898111.1" /db_xref="GI:187927624" /db_xref="GeneID:6286660" /translation="MATSNLYRTGEAPAQTGKGHGTDALGPSDSSDSGSDVVGGPGLG SDVEDRFDDDPAVHPHGNAANRTAGADLGDVNLDSDTDSTGTGERRAAGHEPVIREGG DLMPDAIRDVHDPEVDTPIDDENFEHATGLAGENDDADAPDAVELDEAPIDPQPGSRD VPVQSPTGGGTDWSDNMRRSRPTYKGKRVPGQHRS" gene 562744..563025 /locus_tag="Rpic_0525" /db_xref="GeneID:6288639" CDS 562744..563025 /locus_tag="Rpic_0525" /note="KEGG: rso:RSc0596 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898112.1" /db_xref="GI:187927625" /db_xref="GeneID:6288639" /translation="MKQHAQQPHKPAAQAGEKAGQRKSESKKGEHNAQAQQARGVAKE RTSMQHGTDQSAKRPMRAPAEDGRAAAQEGQLPQNQQRLGQHQNSRKQP" gene 563022..563222 /locus_tag="Rpic_0526" /db_xref="GeneID:6288640" CDS 563022..563222 /locus_tag="Rpic_0526" /note="KEGG: rso:RSc0597 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898113.1" /db_xref="GI:187927626" /db_xref="GeneID:6288640" /translation="MSATRKPRGDDQAEAPSGDAIRPVVPAIPSESGVGEEDPGDFEN ASIRSDDGKRPSVPPRKPGERG" gene complement(563241..563579) /locus_tag="Rpic_0527" /db_xref="GeneID:6288641" CDS complement(563241..563579) /locus_tag="Rpic_0527" /note="KEGG: rso:RSc0598 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898114.1" /db_xref="GI:187927627" /db_xref="GeneID:6288641" /translation="MTTAAPTPKPEWLALGAGQTGLHWLAARTTLVALEGSLHLEPPS RGTTEHYALGAGHAHVVEMSGWWHLHADTRSGAHLRVVAPALRTQRPAWPAMWRWVAN WAQPRGTLRG" gene 563794..565257 /locus_tag="Rpic_0528" /db_xref="GeneID:6288642" CDS 563794..565257 /locus_tag="Rpic_0528" /note="PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: rso:RSc0599 putative transcription regulator protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, GntR family with aminotransferase domain" /protein_id="YP_001898115.1" /db_xref="GI:187927628" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR004839" /db_xref="GeneID:6288642" /translation="MSVTELTPPPAQPLYRTLADHYLGAIRSGVLAPGERMPSVRMLM RTHAVSLSTALQVCRHLEAEGWLEARERSGYFVRQPRRALLAPVKEPEVSTPDPAAYV GVHARVSAIVARGQQATVHVDLSGASGAAALYPAAALNRIASQVLRRYPLLLTQAVIP NGHPELQTAVARRALDMGVQVAPDDVIVTHGCIEAVNLALRAVAQPGDTVAVESPTYY GLLQVLESLGMRAVEIPTSPRTGMSLEALEMAVQAYGNIRAVVVVPNLQNPLGSIMPD AAKRRMAAFCDANRIALIEDDTYSALGDSPTPLRALKAWDRTGSVIYCASLSKVLAPG LRLGWMAAGRWQGRVQMLKFAQSRPNDSWSQVLAGRFIASGAYDRHLRTLRQTLREQR ERMAESIAGCFPAGTRLSVPSGGLAMWVELPANVSSMELFDAALAQGIRIAPGTMFSN LNRFDHFFRICFGLAPSANLEAALATLGQITQELAER" gene complement(565267..565935) /locus_tag="Rpic_0529" /db_xref="GeneID:6289600" CDS complement(565267..565935) /locus_tag="Rpic_0529" /note="KEGG: rso:RSc0600 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898116.1" /db_xref="GI:187927629" /db_xref="GeneID:6289600" /translation="MMPMQTTMLSFSLRVAGGAALALLVGACASPEPTLHTLSARPEA TDTSRFQRAFRLSGVRVPDRLDKPQIVLRTSDSEVVALEQQRWAAPFGSELRDALSAN LAATLSAVDVGGAAAPAGVPLYRIGAEMRSYDARPGQGVTALVTWRVSRDAATQGASA AALTCQTTLALPVSGPSAAADSEAGVNAVVSSTQRLVQQWSQQIAQSVQGLEAPSAVP AWCR" sig_peptide complement(565267..565356) /locus_tag="Rpic_0529" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.915 at residue 30" gene complement(565932..567575) /locus_tag="Rpic_0530" /db_xref="GeneID:6289601" CDS complement(565932..567575) /locus_tag="Rpic_0530" /note="PFAM: Mammalian cell entry related domain protein; KEGG: rso:RSc0601 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="Mammalian cell entry related domain protein" /protein_id="YP_001898117.1" /db_xref="GI:187927630" /db_xref="InterPro:IPR003399" /db_xref="GeneID:6289601" /translation="MTDPVDNENIPAPRRMKRKRWLPSLIWLVPIVALTVGATLMARV ILARGAQVTVTFSSAEGIEAGKTRVKYKSVDIGVVKAVGLTDDRSGAVVLIELTHDGK AFAASDTRFWVVRPRVAAGSISGLGTLLSGAYIGVDGGSSQEKKSTFKGLDTPPAISA DAPGKQFTLHAPDLGSLDIGAPVYFRRVRVGQVTAYDIDTDGKGVTLHIFVNAPFDKF VARGTRFWNASGIDLKLDANGLKVDTQSLLTVALGGIAFQTPEEADHEPAASDAQFQL VRNETAALKDPEHLSQTVVMYFHRSLRGLNVGAPVEFKGINVGEIKSIGIHYSKKRHE FVLPVTATLYPTRFGMDIRDDNPQHAAEDVRTQFDVLVKNGMRAQLKSASLLTGQQFV NLDFIDTAEREKTAPRFGMRDRDGAYVFPTADNPTDDIEAQIAGIAKKLNKVPFEQIG QDVHRTLTTLDATLKQTEQLAKTVNSDLAPQMKETLAEARRTLDSARQVFSDDAPLQR NARDTLEQVAKAAASVRVLTDYLDRHPEALIRGKAKDAQ" gene complement(567572..568309) /locus_tag="Rpic_0531" /db_xref="GeneID:6289602" CDS complement(567572..568309) /locus_tag="Rpic_0531" /note="PFAM: Paraquat-inducible protein A; KEGG: rso:RSc0602 hypothetical protein" /codon_start=1 /transl_table=11 /product="Paraquat-inducible protein A" /protein_id="YP_001898118.1" /db_xref="GI:187927631" /db_xref="InterPro:IPR002129" /db_xref="InterPro:IPR007498" /db_xref="GeneID:6289602" /translation="MNSATTPAPAQPGQEGRPLRAAAHGLVTCERCGLLARMPDSRAA TQAVLTREYAPDDTAAAPVCPRCMSPMHVRKPDSLARCWALLIAAAAMYLPANLLPVM ITDTLLGTQQDTIMSGIVYLWTSGSWHLAIIVFIASFLVPLAKLGILAVLCLSVQQRW RWNPRLRTRLYALVEIIGRWSMLDVFVVTLLAGLVHLSTLAIIKPGPGVGPFAAVVVL TMFAARCFDPRLIWDVIDEPDPEETDV" gene complement(568306..569085) /locus_tag="Rpic_0532" /db_xref="GeneID:6289603" CDS complement(568306..569085) /locus_tag="Rpic_0532" /note="PFAM: Paraquat-inducible protein A; KEGG: rso:RSc0603 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="Paraquat-inducible protein A" /protein_id="YP_001898119.1" /db_xref="GI:187927632" /db_xref="InterPro:IPR007498" /db_xref="GeneID:6289603" /translation="MEPSNVKFPFPLPQSWRAAGDTPDAKAAPVALPLPGDPDAWIAC EHCDTLHRHEVIALDEEAHCTRCGVKLYRNQSERLSVLLPLVLTGIIVYVVANIFPIA EMNGGGNRHATTLWGAIVALYDYDMLFAAVLVALTTVFFPLMYMSVLAPLLIARVRGR QHPAAALVLRAAALIRPWAMVEIFMLGVVVALIKVARMVSLEADAGLWAFAALTVFLT VALSIDLRPFWREIGLTLPPGSHIDAPTGMDAAARPGEDRP" gene 569323..569814 /locus_tag="Rpic_0533" /db_xref="GeneID:6287041" CDS 569323..569814 /locus_tag="Rpic_0533" /note="KEGG: dre:794124 hypothetical protein LOC794124" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898120.1" /db_xref="GI:187927633" /db_xref="GeneID:6287041" /translation="MTYLRASSLVVALALAGGTAAAYAQTGGAPSNSTAGGGSMSAAG GAGTDATASGMGDSTANGSSANSGRDTSRNRNATGKQGRSGNTRSGSSGSYGGSANDS TGSTTGGGSGGVGVGAPGAGAAMGGPGGGGGGAAGSGGAGAGAGGAGAGGAAGGSAGG GSR" sig_peptide 569323..569397 /locus_tag="Rpic_0533" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.955 at residue 25" gene complement(569833..570696) /locus_tag="Rpic_0534" /db_xref="GeneID:6287042" CDS complement(569833..570696) /locus_tag="Rpic_0534" /EC_number="3.1.1.1" /note="KEGG: rso:RSc0604 probable hydrolase oxidoreductase protein; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase" /codon_start=1 /transl_table=11 /product="S-formylglutathione hydrolase" /protein_id="YP_001898121.1" /db_xref="GI:187927634" /db_xref="InterPro:IPR000801" /db_xref="InterPro:IPR014186" /db_xref="GeneID:6287042" /translation="MTIPVPALELLSEHACFGGVQRFYRHASTAIRLPMRFSVYLPPQ ALAGTSCPALFYLAGLTCTEETFAIKAGAQRVAAREGLILIAPDTSPRDANAPGETDS WDFGIAAGFYLDATQAPWREHYRMESYIADELHHIARVVFPVAAGRIGIFGHSMGGHG ALTLALRHRERFASVSAFAPIAHPSVCPWGIKAFTGYLGDDRTAWAAHDATQLMRQAS CPFPRGILIDQGEADKFLAEQLYPDDFAAACAAAGQPLQLRRHPGYDHGYYFIETFIE DHLLHHAAQLR" gene complement(570719..571825) /locus_tag="Rpic_0535" /db_xref="GeneID:6287043" CDS complement(570719..571825) /locus_tag="Rpic_0535" /note="TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rso:RSp0069 probable bifunctional: glutathione-dependent formaldehyde dehydrogenase and alcohol dehydrogenase class III oxidoreductase protein" /codon_start=1 /transl_table=11 /product="S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase" /protein_id="YP_001898122.1" /db_xref="GI:187927635" /db_xref="InterPro:IPR002328" /db_xref="InterPro:IPR013149" /db_xref="InterPro:IPR013154" /db_xref="InterPro:IPR014183" /db_xref="GeneID:6287043" /translation="MKTKAAIAWKAGAPLTVEEVDLQGPRAGEVLVEIKATGICHTDY YTLSGADPEGIFPAILGHEGAGVVLEVGAGVTSLKAGDHVIPLYTPECRQCKFCLSRK TNLCQAIRATQGKGLMPDGTSRFSLDGKPLFHYMGTSTFANHIVVPEIALAKIRPDAP FDKVCYIGCGVTTGVGAVVYTAKVEPGANVVVFGLGGIGLNVIQGAKMVGADKIIGVD LNPAREAMARKFGMTHFINPSDVENVVDHIIQLTDGGADYSFECIGNTKVMRQALECC HKGWGQSIIIGVAEAGAEISTRPFQLVTGREWKGSAFGGARGRTDVPKIVDWYMEGKL NIDDLITHTLPLERINEGFELMKRGESIRSVVLY" gene 572030..573859 /locus_tag="Rpic_0536" /db_xref="GeneID:6287044" CDS 572030..573859 /locus_tag="Rpic_0536" /note="PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: rso:RSc0606 putative methyl-accepting chemotaxis transmembrane protein" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer with Cache sensor" /protein_id="YP_001898123.1" /db_xref="GI:187927636" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004010" /db_xref="InterPro:IPR004089" /db_xref="GeneID:6287044" /translation="MGVVVGNHTVLASIRTRILLTCVAIVVGALTFAGGLNYLVTRSY NDESIRQNLQSVARGHIAGIDDWVASKTQMMVSLQDVAVSADPIPVFKAVHKAGGFIN VYVGYPDKSYKFSNPEGIPPTYDPTARPWYKQAVEAGKPVVTPPYVSASTGQLVVTFA VPILEGGALKGVIGGDVAMDSVIANVKAIHPTQASFGFLVNAAGKIVAHPNDKLTLKP ATELAAGLNEATLASLAQAERPVEVTVDGASKLLYRQGVKGTDWGLVVALDKSDATAG MRSLVMTSIGALVGVAIVAALIVGAMTARAFRRLSMIRDAMDDIGSGSGDLTKRLPSD GEDEVAQIARSFNAFADKLTAVMQQIRLGSDSVRSAAQEIAAGNADLSQRTEEQASSL EETASSMEELTSIVKQNADNARQASQLAVTASDVATRGGNVVGQVVQTMGGINESSKK IADIIGVIESIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIK ALISDSVDRVSNGTALVDQAGVTMAEIVDAVKRVTDIMGEISSASEEQSSGIEQVNQA VNQMDQVTQQNAALVEQAAAAAESLEEQAHNLNEAVGQFRLSH" gene complement(573887..574555) /locus_tag="Rpic_0537" /db_xref="GeneID:6288537" CDS complement(573887..574555) /locus_tag="Rpic_0537" /note="PFAM: Glutathione S-transferase domain; KEGG: bam:Bamb_5220 glutathione S-transferase, N-terminal domain" /codon_start=1 /transl_table=11 /product="Glutathione S-transferase domain" /protein_id="YP_001898124.1" /db_xref="GI:187927637" /db_xref="InterPro:IPR000463" /db_xref="InterPro:IPR004045" /db_xref="InterPro:IPR004046" /db_xref="GeneID:6288537" /translation="MPQDRHLTLYHSPRSRSRGARMLLEELGADYEVHAFDLTTGQHK SPEFLAINPLGKVPTLCHGDAVITEQVAVYLYAAELYPEAGLSPAVGDPLRGAYLRRM AFYGTCFEPAIVDRSMKREPAAYSMSPYGNFDTMLGTLTAQLEKGPYLLGERFTAADV LWGAALGWTTMFKLIPETPLVRGYIDRVMARPAMQRAQAADVALAEAQDKAKAEATNA APAP" gene complement(574809..576566) /locus_tag="Rpic_0538" /db_xref="GeneID:6288538" CDS complement(574809..576566) /locus_tag="Rpic_0538" /note="TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: bxe:Bxe_B2626 periplasmic sensor diguanylate cyclase (GGDEF domain)" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_001898125.1" /db_xref="GI:187927638" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR003660" /db_xref="GeneID:6288538" /translation="MDRRFGASVAIVLVPVLSLSCWLLGYAWLAYGRADDSARSVQVL RMTLLAMEKVSAERGPTNGVLGEDLPVPAERSAALQRMRAVSDEHVAQLLDALGPEHC PGCEADIKAARRAQTHLAAARANIDRLTALPLRSRSSDDLADGVNRMIAVIPEFLPIV NARTANITRGDPDVLNCLTLARLSADLREYAGQLGSRFTGALAMHRMLTFDEQLAIER TQGRIDQLRSMIETRVGAHSALNQHALATLGAQYFGDGLRYVAAVRAKASQPGGVDIT PAAFAERYVPTMRATTDFRDIVLRLADDDIRQHRRAMLLVLIGSAGAVVSVLGALAWM MISFRRNVVRPFVNATRLIDGIARGNLSVHIPTDFARREIRAMFDAIRVLRINSIERR RLEVERAHLMQELSRMAETDPLTQLLNRRAFEDRAGAMCKSPQPKARLIALIMFDIDH FKRINDTYGHAVGDEALRTVARLCRSEGPSADMVARIGGEEFAVMVWADSLAQARAVA DHLRHRIAEVTVPTGTDLPCSMTASFGVAAAPAADGPELEPLLRRADHLLYAAKLAGR NCVMADRPPASPDVALAAD" sig_peptide complement(574809..574871) /locus_tag="Rpic_0538" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.830) with cleavage site probability 0.559 at residue 21" gene complement(576906..577187) /locus_tag="Rpic_0539" /db_xref="GeneID:6288539" CDS complement(576906..577187) /locus_tag="Rpic_0539" /note="PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bam:Bamb_6274 antibiotic biosynthesis monooxygenase" /codon_start=1 /transl_table=11 /product="Antibiotic biosynthesis monooxygenase" /protein_id="YP_001898126.1" /db_xref="GI:187927639" /db_xref="InterPro:IPR007138" /db_xref="GeneID:6288539" /translation="MAHIEILAGKQREFEAAVQQALPLFARAKGCHGAELHHIVERDT SYVLLVRWNTVEDHMVDFRESDDFQEWRKLVGPFFAKAPEVVHSEVAVK" gene 577449..578498 /locus_tag="Rpic_0540" /db_xref="GeneID:6288540" CDS 577449..578498 /locus_tag="Rpic_0540" /note="PFAM: protein of unknown function UPF0118; KEGG: bch:Bcen2424_3807 protein of unknown function UPF0118" /codon_start=1 /transl_table=11 /product="protein of unknown function UPF0118" /protein_id="YP_001898127.1" /db_xref="GI:187927640" /db_xref="InterPro:IPR002549" /db_xref="GeneID:6288540" /translation="MDSGNDHQKFLYLLLFAVTLGLCWILSPFFGAVFWGVILAILFQ PVQRALVARMGKRRNLAALVTLALIILIVILPVIFVAATIVQEIGVAYQEIQSAQPNY SRYLSEAVHALPTWVQQLLAKAGLTNIAGIQKKLADGAAQISQFAATKALSIGQNTFQ FVVGFGVMLYMVFFLLRDGTEIGRRVRRALPMDEEHKRLLLSKFTTVVRATVKGNIAV ALVQGALGGLIFWILGIDGVVLWGALMAFLSLLPAIGASLVWIPVAVYFLMVGAIWKC VILVAFCGGVIGLVDNLLRPLLVGKDTKMPDWVVLISTLGGMELFGITGFVIGPLVAA LFMASWDIFARGQNE" gene complement(578529..579773) /locus_tag="Rpic_0541" /db_xref="GeneID:6289699" CDS complement(578529..579773) /locus_tag="Rpic_0541" /EC_number="1.5.1.9" /note="PFAM: Saccharopine dehydrogenase; KEGG: bur:Bcep18194_C7476 putative saccharopine dehydrogenase" /codon_start=1 /transl_table=11 /product="Saccharopine dehydrogenase (NAD(+), L-glutamate-forming)" /protein_id="YP_001898128.1" /db_xref="GI:187927641" /db_xref="InterPro:IPR005097" /db_xref="GeneID:6289699" /translation="MPAPHYDVVVFGATSFVGQILTRYLAEHFSGDAETLRWAIAGRS EAKLQEVKCSLGAAGESIPIIVADAANEAQLQALCAQTRVVVSTVGPYALYGEPLIKV CAESGTDYCDLTGETQWIRRMIGTYEATAQQSGARIVHCCGFDSVPSDMGVYFLQQHA MRQWGTPATQVKLRVKTLKGGASGGTIASLINVVQEAAADPALRKELADPYALCPKGH GFTARQRSVRGAAFDADFDAWIAPFVMAAINERVVHRSNALSGNAYGNPFLYDEAVIT GHGLSGRMKAMTMVAGLGAFMLGIVIKPARIVMQRFLLPKPGEGPTPAAQLAGRYDLR LFGRTDQGNTLRVKVSGDRDPGYGSTGKMLGQAAASLALDHVKDGIKIGRPGGFWTPA TMFDERFIERLTRHAGLRFERI" gene 580184..581770 /locus_tag="Rpic_0542" /db_xref="GeneID:6289700" CDS 580184..581770 /locus_tag="Rpic_0542" /note="Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates" /codon_start=1 /transl_table=11 /product="isocitrate lyase" /protein_id="YP_001898129.1" /db_xref="GI:187927642" /db_xref="InterPro:IPR000918" /db_xref="InterPro:IPR015809" /db_xref="GeneID:6289700" /translation="MAQYQDDIKAVAGLKETHGSAWNAINPEYAARMRAQNKFKTGLD IAKYTAKIMRADMAAYDADPSKYTQSLGCWHGFIGQQKMISIKKHFNSTERRYLYLSG WMVAALRSEFGPLPDQSMHEKTSVSALIRELYTFLRQADARELGGLFRELDAAKDANA KAAIQAKIDNHVTHVVPIIADIDAGFGNAEATYLLAKQFIEAGACCIQIENQVSDEKQ CGHQDGKVTVPHEDFLAKIRAIRYAFLELGVDDGIIVARTDSLGAGLTKQIAVTNTPG DLGDQYNAFLDCEELSADQLGNGDVVIKRDGKLLRPKRLPSNLFQFRAGTGEARCVLD CITSLQNGADLLWIETEKPHIAQIGGMVKEIRKVIPNAKLVYNNSPSFNWTLNFRQQV YDAMKEAGKDVSAYERGQLMSTEYDDSELAKLADEKIRTFQADASREAGIFHHLITLP TYHTAALSTDNLAKEYFGDQGMLGYVAGVQRKEIRQGIACVKHQNMSGSDIGDDHKEY FSGEAALKAAGKDNTMNQFH" gene 582045..583340 /locus_tag="Rpic_0543" /db_xref="GeneID:6289701" CDS 582045..583340 /locus_tag="Rpic_0543" /note="TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_6665 metabolite/H+ symporter, major facilitator superfamily (MFS)" /codon_start=1 /transl_table=11 /product="metabolite/H+ symporter, major facilitator superfamily (MFS)" /protein_id="YP_001898130.1" /db_xref="GI:187927643" /db_xref="InterPro:IPR004736" /db_xref="InterPro:IPR005828" /db_xref="InterPro:IPR005829" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:6289701" /translation="MHPPSSLSTGQSKAAAVFRVTAGNFLEQFDFFLFGFYATQIANV FFPTESEFASLMMTFAVFGAGFLMRPLGAVVLGAYIDDVGRRKGLIVTLSIMASGTVL IAFVPGYATIGLLAPALVLLGRLLQGFSAGAELGGVSVYLAEMATPGRKGFFTSWQSA SQQVAIVVAAGLGFALNQGLSAPAIAAWGWRVPFFVGCMIVPFIFVLRRNLEETQEFK ARKHRPSMKDVLSTLVQNWGVVIAGMMLVAMTTTSFYLITVYAPTFGKTVLHLSTADS LLVTLCVGVSNFVWLPIGGALSDRIGRRPLLIGMTVLTIATAYPALSFLAHAPSFMNM LLVLLWLSFMYGIYNGAMIVALTEVMPVQVRVAGFSLAYSLATAVFGGFTPAISTAAI HMTGDKAAPGYWMSLAAVCALLATLTLYRRRAVTLAPAH" gene 583397..584179 /locus_tag="Rpic_0544" /db_xref="GeneID:6289702" CDS 583397..584179 /locus_tag="Rpic_0544" /note="PFAM: extracellular solute-binding protein family 1; KEGG: bch:Bcen2424_6664 extracellular solute-binding protein, family 1" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein family 1" /protein_id="YP_001898131.1" /db_xref="GI:187927644" /db_xref="InterPro:IPR006059" /db_xref="InterPro:IPR011587" /db_xref="GeneID:6289702" /translation="MKTLFLKLCAAALVATSAAAAHVQAAELHVMSSGGFTAAYKVLG PKFAAQTGNTLNTALGPSMGKSPEAIPNRLARGEPADAVIMVGYALDDLIKQGKVIPE SRVELADSRIGMVVRDGAAKPDISSPEALMQVLLHAKSIAYSDSASGVYIERELFKKL GIEEQVKAKAKMIPRIPVASVVATGDYEIGFQQVSELLPVQGATFVGKIPESLQSVTR FAAGIPVGAPHPKEAKALLDYLASPGAQADVKSTGLDSVLAR" sig_peptide 583397..583474 /locus_tag="Rpic_0544" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.914 at residue 26" gene complement(584216..585133) /locus_tag="Rpic_0545" /db_xref="GeneID:6287053" CDS complement(584216..585133) /locus_tag="Rpic_0545" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5626 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_001898132.1" /db_xref="GI:187927645" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:6287053" /translation="MGINFDLTDLQAFRAVVELGNFRKAAEAISISQPALSRRIDKLE SALGVPLFERTTRSVTLTTVGRVFARSAEQLLDDLDVALLGIRDVSSSRLGQVTIACV PSVAYYFLPNLIATYHRRFPRIRVKLLDASANEVLGAVISGEADFGVSFMGSQEPEIE FKMLLQERFVAACRRDHPLARKKRVTWNELYEHEYVSVDKTSGNRLLLDQALSAVAPR APSVCETRHVTTMLGLVEAGLGVAAVPSMAMPGHEHPILTSVPLVEPVVNRRVGIVKR RGRALTPAAEEFHRMIIEAKRSGMMASDA" gene complement(585332..586831) /locus_tag="Rpic_0546" /db_xref="GeneID:6287054" CDS complement(585332..586831) /locus_tag="Rpic_0546" /note="TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bch:Bcen2424_6666 diguanylate cyclase" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_001898133.1" /db_xref="GI:187927646" /db_xref="InterPro:IPR000160" /db_xref="GeneID:6287054" /translation="MHLRPLARRLATSAGHHPFVVGALGTLLTFIVLAISVLTLWANR ETAIEHAHDTSKNVAAVLASHISRTVESADQSLQTLIGALDKPGIRNLDPQVRHDLLF SPTASARYVTGMGVTDDKGQLVDGCCSLTHRWDFSDRDYFIVHREHANLGLYVSGVYK ARSRAGVEAIALSRRMNRQDGTFAGTALVAIDLDYFRQLLERLDVGPRGITAIVRTDG TLMARNPPGAARAFNLSKSLTFPRMVNQESGFYVAPSASDGVVRLYTFQRVPGTPFIA VVAPAMSDALAAWQRLSWIVGLSSLSVSLAFCAGVWLLAFALRGRVMAENHLRELTQT DPLTGLKNRRALDVALENEWDRLQRNDSRLSVLFIDADHFKRYNDAHGHAQGDVALQY LAQCISKHARRRGDLAARYGGEEFVVLLPDTDEAGATRIAEAIRAEVEGAGASVGDAG LAPFTVSVGCATARRASFPSLNALTKAADDALYEAKRKGRNRIDYATVG" gene complement(587072..587935) /locus_tag="Rpic_0547" /db_xref="GeneID:6287055" CDS complement(587072..587935) /locus_tag="Rpic_0547" /note="PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; TrkA-N domain protein; NmrA family protein; KEGG: bam:Bamb_6340 NmrA family protein" /codon_start=1 /transl_table=11 /product="NmrA family protein" /protein_id="YP_001898134.1" /db_xref="GI:187927647" /db_xref="InterPro:IPR001509" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002225" /db_xref="InterPro:IPR003148" /db_xref="InterPro:IPR008030" /db_xref="GeneID:6287055" /translation="MTILVTGATGRVGRQVVHQLANRGADVRALVRDPSKADFPASVN VVQGDMLDLDSLRRAFVGVRTLFLLNAVAGDEFTQALIALNVARESGVERVVYLSVMH AERFVNVPHFAVKSGAERMIEQMGFSATILRPAYFMDNEHMVKDVIVNHGVYPMPIGS KGVAMVDTRDIAEVAAIELIRRDAAPGKLPVETINLVGPDTLTGPELASIWTETLRRP VAYGGDDPTAFESNLTNFLPKWMAYEMRLMAERYVSDGMVPQAGDVERLTSILGRPLG TYRDFAAALAQ" gene 588039..588938 /locus_tag="Rpic_0548" /db_xref="GeneID:6287056" CDS 588039..588938 /locus_tag="Rpic_0548" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6341 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_001898135.1" /db_xref="GI:187927648" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:6287056" /translation="MDLLALADFNLVARHGSFGEAARATGRPKATLSRRVSELEGSLE LRLFERGSRGLKLTQEGHALYERTGTLLTEIAETAAAIASGSERPRGRLRISAPMLFS QTAMGKLVATFALKYPEVLLEVTTEDRGVDMIEEGYDLVIRVNPDPDESLIGRVFMRD RLVVVAKPGLERPTGKALAPAVLRGAGTGNAAWDITGPEGKSRIAIRPVAHLSSLIMV RDTVRLGVGAACLPVSLVAHDLEAGTLVHWGDVDGPDIALWALYPSRRLLSARVSAFL EHLKDAFPTGTPQELAAYMHSSP" gene complement(588979..589062) /locus_tag="Rpic_0549" /pseudo /db_xref="GeneID:6287113" gene 589224..589403 /locus_tag="Rpic_0550" /pseudo /db_xref="GeneID:6287114" gene complement(589473..589757) /locus_tag="Rpic_0551" /db_xref="GeneID:6287115" CDS complement(589473..589757) /locus_tag="Rpic_0551" /note="KEGG: rso:RSc2698 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898136.1" /db_xref="GI:187927649" /db_xref="GeneID:6287115" /translation="MDAYPTCRYKGFDVYPLIYLFDPPREWHERRPDRSYSASVLICQ EGEPPSTERSRIFPLPATQWDNIGTAKRAAAKMAEDIIDGFVPGRSMHSQ" gene complement(589817..590197) /locus_tag="Rpic_0552" /db_xref="GeneID:6287116" CDS complement(589817..590197) /locus_tag="Rpic_0552" /note="KEGG: reu:Reut_B5732 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898137.1" /db_xref="GI:187927650" /db_xref="GeneID:6287116" /translation="MTHASNKTSFLCTLPGAAKSMAYSITVGFIRDGQPNCVQFTSFV GEGRRSFRVLASAPDLASAAMASVETLCRLAIGQVIRDSLHAKTAQGDHTLDMRVQPW EGELRPAGSRSTLKPPRPHLVVRG" sig_peptide complement(589817..589885) /locus_tag="Rpic_0552" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.976) with cleavage site probability 0.970 at residue 23" gene complement(590285..590569) /locus_tag="Rpic_0553" /db_xref="GeneID:6288047" CDS complement(590285..590569) /locus_tag="Rpic_0553" /note="KEGG: rso:RSc2700 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898138.1" /db_xref="GI:187927651" /db_xref="GeneID:6288047" /translation="MNASPSATYKGFDLYPLVYRTEAVQSWPRKRLDRTFNASVVICR AGHQPGAEHSRVFQMTPTAWENVGTARRGALKFGEDVINGLIPGESVASL" gene complement(590661..590987) /locus_tag="Rpic_0554" /db_xref="GeneID:6288048" CDS complement(590661..590987) /locus_tag="Rpic_0554" /note="KEGG: rso:RSc2701 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898139.1" /db_xref="GI:187927652" /db_xref="GeneID:6288048" /translation="MLDLVAFTKPVLDEITGQDVRTWHSGPSVLAANWQVPEFDSRIW RVRTLTIAFTHDVMNQLMHADQQDLCQLQCMLDRFLRAQLGMHAQADRGDRMLVITVD HLGVAS" gene complement(591537..591671) /locus_tag="Rpic_0555" /db_xref="GeneID:6288049" CDS complement(591537..591671) /locus_tag="Rpic_0555" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898140.1" /db_xref="GI:187927653" /db_xref="GeneID:6288049" /translation="MQAWSAWANQFLLMSYATMGKANALVHAYKCMAQAIGNEVTVLA" gene 591699..591929 /locus_tag="Rpic_0556" /db_xref="GeneID:6288050" CDS 591699..591929 /locus_tag="Rpic_0556" /note="KEGG: reu:Reut_A0600 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898141.1" /db_xref="GI:187927654" /db_xref="GeneID:6288050" /translation="MNKVDSPYTVSVYPIEQEPGVWFATYLINEYRDGTERLLANVSM RHNVHGTEALARNAARLAGRAAIARLTHRHKN" gene 592011..592265 /locus_tag="Rpic_0557" /db_xref="GeneID:6288485" CDS 592011..592265 /locus_tag="Rpic_0557" /note="KEGG: rso:RSc2703 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898142.1" /db_xref="GI:187927655" /db_xref="GeneID:6288485" /translation="MFASEEWEELHLTPEGWKDGSYRHVPGDPVMIEPPANDVLTVRR HVAAVYGGPSRVTEDRTPRTDDMGQIEQLLLKYGAPVFGV" gene 592367..592579 /locus_tag="Rpic_0558" /db_xref="GeneID:6288486" CDS 592367..592579 /locus_tag="Rpic_0558" /note="KEGG: rso:RSc2704 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898143.1" /db_xref="GI:187927656" /db_xref="GeneID:6288486" /translation="MTLCRACLAIEVHRLGASGHAFLRITDTQRIKASKTAAVTVSTF ACRTCGASWTYREGKNVPNPGWSLDH" gene 592748..593498 /locus_tag="Rpic_0559" /pseudo /db_xref="GeneID:6288487" gene complement(593755..594462) /locus_tag="Rpic_0560" /db_xref="GeneID:6288488" CDS complement(593755..594462) /locus_tag="Rpic_0560" /note="PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bch:Bcen2424_6299 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="YP_001898144.1" /db_xref="GI:187927657" /db_xref="InterPro:IPR001509" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR002424" /db_xref="InterPro:IPR013968" /db_xref="GeneID:6288488" /translation="MPTRPAPQAAAARHAIVTGASSGIGRAIAERLLADGWRVTGLCR TAPAEPVEGLEIAQVDVTDFARLGKVCDSLGAVDALVHAAGFMRTAPLGELCAADGEA MWRVHVDAAAFLADRLVQRMPAGGRILLIGSRTANGAPTRSQYAATKAALVGMARSWA AELAPRGITVNVIAPGATDTPFLHDPARAHTPPRMPPIGRFIAPEEVAAMAAFLAGEY GGAITGQQIVMCGGASL" gene complement(594465..595229) /locus_tag="Rpic_0561" /db_xref="GeneID:6288711" CDS complement(594465..595229) /locus_tag="Rpic_0561" /note="PFAM: regulatory protein DeoR; KEGG: bch:Bcen2424_6298 transcriptional regulator, DeoR family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, DeoR family" /protein_id="YP_001898145.1" /db_xref="GI:187927658" /db_xref="InterPro:IPR001034" /db_xref="InterPro:IPR014036" /db_xref="GeneID:6288711" /translation="MKVTKRREAMLKAVLGGMNDVATLCEHFGMSEATVRRDLRALAS DRRILRTYGGAAAVGSHEPEAPLEERRSSAREQKEAIARLAQAHIADGDTIFLDGGTT TAALARHLSGKQIHVVTNNLMVVTSLAAGGIPVTLIGGDVRPSSMSTLGPLAQLSLGR VSVDKAFLSADGVVATNGLCEASADQAYLKECVIRQAAQVIVLATADKLGRATQQHWT PIERPWTLITDNGASPDQLDPFHERDEVDVEIAPLD" gene complement(595293..596468) /locus_tag="Rpic_0562" /db_xref="GeneID:6288712" CDS complement(595293..596468) /locus_tag="Rpic_0562" /note="PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: bch:Bcen2424_6297 glycosyl hydrolase, BNR repeat-containing protein" /codon_start=1 /transl_table=11 /product="glycosyl hydrolase BNR repeat-containing protein" /protein_id="YP_001898146.1" /db_xref="GI:187927659" /db_xref="InterPro:IPR002860" /db_xref="GeneID:6288712" /translation="MTATLPSYAAFDSNVRAAYTDAERREAFLPTPCVQNHAANLHAL PNGDLLCVWFGGTQEGIPDVSIYLSRLAAGTSEWQPATKLSEDTTRSEQNPVLFTTPT GELWLIYTAQLSGHQNTAIVRRRISTDGGRSWGPIDTLFDQAGTFVRQPIVVLPDGAW ACPVFLCRTQPGERWVGNDDISAVMISEDQGRTWSRHDVPDSIGCVHMNVQTLADGSL LALYRSRWADHIYASRSQDGRTWSAPQPTTLPNNNSSIQFVALRNGHLALVYNESDAS HSTGRRTSLYDDIEDAEDHGELRDQQASTRGTAFWGAPRAPLSLAISEDGGQTWRRRN IEIGDGYCMTNNSADQRNREYSYPSIVQGNDGALHIAFTYFRQRIKYVTVDESWVRG" gene complement(596503..597933) /locus_tag="Rpic_0563" /db_xref="GeneID:6288713" CDS complement(596503..597933) /locus_tag="Rpic_0563" /note="PFAM: Na+/solute symporter; KEGG: bch:Bcen2424_6296 Na+/solute symporter" /codon_start=1 /transl_table=11 /product="Na+/solute symporter" /protein_id="YP_001898147.1" /db_xref="GI:187927660" /db_xref="InterPro:IPR001734" /db_xref="GeneID:6288713" /translation="MTSFSTWDTTMIIAMVVVYIVVTSVASIRLRSRTSEQFMVAGRS MPAVVVAVLLMSEYIGAKSTIGTSQEAFSVGIAASWSVISAAIGFLLFGLFMAKRLYA SGQFTISGFIAKKYGNTAKLVVSAVMIYALFLVNVGNYVSGAAAISTVMHIDLPIAAL ITAAVSTIYFVWGGLKSVAYLTIVHSAVKVVGIGIIVAVAWKLSGGIAPMAQAMPEHY FTWKGALSGGTIGAWIIGSAGAIFSTQFIIQAISSTKSPEAARSASLMAAVLCVPISI ALGFIGVAAKYLYPGIKSLYALPVFLQHMHPLLAGVVTTSLVASIFVSVCTVALAIAS LIVTDFYVPRYRPSAEQEMRMTRWISLAVGVLPLVFVLFVPQILALSFFTRALRLSVS IVALIGIYLPFFNSSRGAVSGLILAAIATTIWYLLGNPFGVDNMYIALVTPALVLVVE KLLFRAAEPAQASAPVANIKPNNAAH" gene complement(598044..600356) /locus_tag="Rpic_0564" /db_xref="GeneID:6288714" CDS complement(598044..600356) /locus_tag="Rpic_0564" /EC_number="1.1.1.262" /note="KEGG: bch:Bcen2424_6295 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; type III effector Hrp-dependent outers" /codon_start=1 /transl_table=11 /product="4-hydroxythreonine-4-phosphate dehydrogenase" /protein_id="YP_001898148.1" /db_xref="GI:187927661" /db_xref="InterPro:IPR005255" /db_xref="InterPro:IPR010737" /db_xref="GeneID:6288714" /translation="MNTSAHTAPKLLILADDLSGAADCAVAGVRAGLRSAVMLRADVG HPIGYPTSADVLALDTDTRRANAVDAAATQVAAWHALARPATRLYKKIDSTLRGNVAA EVAALAPLAGLAIVAPAFPAAGRTTRDGRQWLHGVAVEDTEVWRNESIGGRADLRVML ERQGLQTAVLTLDDIRAGAAALAGRLAALQADGVQAVVCDAQTDDDLAHIAETSVRLA HVFWVGSAGLAPALIRAAGLGSANAAVEGDAATAIAGPVLTVVGSMSSVSHAQASELK AAAGARLLSLELPVEELDTPQADITQTVIDALCEGRDVLVTLSQTTRGNSADGLHFCR RLATLLAPALPHAGGLIATGGETARAVLSTAGIDALRLCDEIESGMPLLHAQLTGVGG VLPVVTKAGGFGTPGSLHAAWRRLIETAASTPPKGTHAMTYRPVIGITMGDAAGVGPE IIMKALTHRAVYEQCRPLVIGDTARLRDAAQRTGAALEVRSIERPADAAFRYGVVDCI DLGLIPADLPYGKLSPIAGDAAYQYIARTVELTSAGELDAICTAPLNKEALHAGGHIF PGHTEMLAHLTGIDEVSMMLVAPNLRVIHVTTHIGLLDAIRRIEPGLVQRTIERAHAT LVRAGIENPRIGVCGINPHAGENGLFGHGEEEQKIIPAVQVLQARGWRVEGPLPADTL FFRAGRGDFDVVVAMYHDQGHGPVKVMGLEAGVNVTVGLPVIRTSVDHGTAFDIAGKG IADERSMLEAFRQACELATRHDDPQAVRAA" gene complement(600353..601522) /locus_tag="Rpic_0565" /db_xref="GeneID:6287520" CDS complement(600353..601522) /locus_tag="Rpic_0565" /note="PFAM: iron-containing alcohol dehydrogenase; KEGG: bch:Bcen2424_6293 iron-containing alcohol dehydrogenase" /codon_start=1 /transl_table=11 /product="iron-containing alcohol dehydrogenase" /protein_id="YP_001898149.1" /db_xref="GI:187927662" /db_xref="InterPro:IPR001670" /db_xref="GeneID:6287520" /translation="MSSTYHFQTVKHIVHGAGSLALLPEKLALLDVPVKRIALITQPV MEQNGVIGRVVQALAARDIEARIVRGVEPEPTIENVETVFREQIAPFAPDAILSIGGG SVLDAAKLFAVRLTNEQPLREWLGIDLIKRPGIPLVLVPTTAGTGSEVTPNAIVTLPD EELKVGIVSRHLLPQLVILDAELTFDLPKPITAATGIDAFVHSLESYISTKANPVSDM FAMESMRLIGANLVEAYQNGRSVKAREAMMLGSMYGGLALTAAGTAAVHALAYPLGGM FGITHGVANAMLLPHVMSFNKDAIVGRLANVARALDISSHDSDDETAADALIERLTEW TDVVQIPQDLRQFGVSETHLDVLAEAASKVKRLLGNNPKPLSHADIKAIYQRLLP" gene complement(601556..602452) /locus_tag="Rpic_0566" /db_xref="GeneID:6287521" CDS complement(601556..602452) /locus_tag="Rpic_0566" /note="TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: bch:Bcen2424_6292 dihydrodipicolinate synthase" /codon_start=1 /transl_table=11 /product="dihydrodipicolinate synthase" /protein_id="YP_001898150.1" /db_xref="GI:187927663" /db_xref="InterPro:IPR002220" /db_xref="InterPro:IPR005263" /db_xref="GeneID:6287521" /translation="MTASFKGIVPALITPMTPTEDVDENGLRVLIDRLIDAGVHGLFV LGTNGEFIALSEEEKLRIARITVEQARGRVPVVAGTGAYATRDVIALNHKMQDVGVDA VSVITPYFNGATQPELFAHYEQIARATSLPILLYTIPAKAGVTLTVDTVRRLADIPNI RAIKDSGGDFDRLLQLINLRRDDFAVFTGTDSMILWTLIAGGDGAVAATTNAVPHVVM SIWNQFQAGNIPAARAAQESLRALRDAFALGTMPVVLKTAAEMLGMPAGPARSPAKPL DEKSRERLAEALAIYRAALNVA" gene complement(602820..602999) /locus_tag="Rpic_0567" /db_xref="GeneID:6287522" CDS complement(602820..602999) /locus_tag="Rpic_0567" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898151.1" /db_xref="GI:187927664" /db_xref="GeneID:6287522" /translation="MPPAGKVVTRSPRRRVGLIACPWLLSTPISPDKEVVVEASVTSA PRYYFGMHAAIFPKG" gene complement(603180..603426) /locus_tag="Rpic_0568" /pseudo /db_xref="GeneID:6287523" gene 603519..603797 /locus_tag="Rpic_0569" /db_xref="GeneID:6289834" CDS 603519..603797 /locus_tag="Rpic_0569" /note="PFAM: protein of unknown function DUF156; KEGG: bpd:BURPS668_A2846 protein containing" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF156" /protein_id="YP_001898152.1" /db_xref="GI:187927665" /db_xref="InterPro:IPR003735" /db_xref="GeneID:6289834" /translation="MSHTIREKQKLLNRVRRIRGQLDAIERALEEEQGCAPVLQQITS CRGAMNGLLAVVLEDHIRTHLTEVDDEHEHADGSAKEQLIEVVHSYFR" gene 603805..605109 /locus_tag="Rpic_0570" /db_xref="GeneID:6289835" CDS 603805..605109 /locus_tag="Rpic_0570" /note="TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bpl:BURPS1106A_A2694 cation diffusion facilitator family transporter" /codon_start=1 /transl_table=11 /product="cation diffusion facilitator family transporter" /protein_id="YP_001898153.1" /db_xref="GI:187927666" /db_xref="InterPro:IPR002524" /db_xref="GeneID:6289835" /translation="MSNFYDTPFHASHDHVFLGEGHEKNERKTWAVIVLCTLMMAAEI IGGSVFGSLALVADGLHMSTHAGAMLIAALAYTYARRHANDPRFVFGTGKLGDLAGFT SAIILAMVALLIGYEAVVRFFSPVPIHFSEAIPIAVVGLLVNIASAWLLSGGDHGGHS HGHSHHHGHAHGHDHGAAGLGDTHPHGREVQHIEAPGGVFALSIFEDGVPPVFRLAGE TAPLPGDVATVTTIRPDGSRQEFLLVRKANYLESTTEIPEPHAFTAVLGIGGQEYSVA FDEHDHDHADGHGAHHRDHNMRAAYVHVLADAAVSVLAIIGLLLARTFGWLWMDPLAG VVGAVVIANWAYGLMRDTGGILVDVTPDKHIGRRIKTALESDGDTLLDLHVWRIGPGH LGAVVSVSTGQAHRGPQFYHQRLRRLQALSHITVEVHASPGK" gene 605235..606191 /locus_tag="Rpic_0571" /db_xref="GeneID:6289836" CDS 605235..606191 /locus_tag="Rpic_0571" /note="KEGG: nha:Nham_4399 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898154.1" /db_xref="GI:187927667" /db_xref="GeneID:6289836" /translation="MYGPSAFVRICAAALALAACGVPGPSRAHGIAGNRFFPGTLNFD DPAVADEFSITAGAVKHPDDAGNVTDRAATISFARLLTPEVSIGFDTGFIRRDWGSMR QPGATGSDVVLKSRLYEDDLNETLIAGSLIYGLPHTGAKRLGANTSATIAPSLYIGQG FGALPDAWSWLRPFAITAGVSVAVPTGKTSGNLSYDPTTRQFNSVNTANVTTVHWGFA LEYSTLYLTDRFVPGVLPKEEPLHQWIPLVEFAFDSPRGQRTRGTVNPGIAYVKDTWQ VAAELVLPATHGSTRGVGATIQVLFFLDDFLPLLFGKPILAR" sig_peptide 605235..605321 /locus_tag="Rpic_0571" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.983 at residue 29" gene 606387..606803 /locus_tag="Rpic_0572" /db_xref="GeneID:6289837" CDS 606387..606803 /locus_tag="Rpic_0572" /note="PFAM: Domain of unknown function DUF1924; KEGG: pna:Pnap_1532 mono-heme class I cytochrome c" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898155.1" /db_xref="GI:187927668" /db_xref="InterPro:IPR009056" /db_xref="InterPro:IPR015170" /db_xref="GeneID:6289837" /translation="MPISKFPPVACLHSVLALALAAAAPLAHAQAPAQLLDQYRAQAG APSDPSRGQEFFTSKHGREWSCASCHGNPPTQTGRHAATGKSIAPLAPAFNPERFTDA AKTEKWFRRNCNDVVGRECTVAEKADVLSWLMTLGK" sig_peptide 606387..606476 /locus_tag="Rpic_0572" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 at residue 30" gene 606837..607343 /locus_tag="Rpic_0573" /db_xref="GeneID:6287625" CDS 606837..607343 /locus_tag="Rpic_0573" /note="PFAM: multihaem cytochrome; KEGG: bmu:Bmul_5868 multihaem cytochrome" /codon_start=1 /transl_table=11 /product="multihaem cytochrome" /protein_id="YP_001898156.1" /db_xref="GI:187927669" /db_xref="InterPro:IPR011031" /db_xref="GeneID:6287625" /translation="MRSIQMSGRFVVTGRAARACLAIAGLGLSFLAAAEEGPGMRAAP LLPKYRQECASCHIAYPPGALPASSWQRILGNLQHHYGTDASLDPATVKQLDQWLTAN AADRSRSIPPPPEDRITRSAWFARTHDEVPTAVWRRPAIKSASNCAACHTKADQGDFN EHNVRIPR" sig_peptide 606837..606941 /locus_tag="Rpic_0573" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.991 at residue 35" gene 607315..608046 /locus_tag="Rpic_0574" /db_xref="GeneID:6287626" CDS 607315..608046 /locus_tag="Rpic_0574" /note="PFAM: cytochrome B561; KEGG: bvi:Bcep1808_6299 cytochrome b561" /codon_start=1 /transl_table=11 /product="cytochrome B561" /protein_id="YP_001898157.1" /db_xref="GI:187927670" /db_xref="InterPro:IPR000516" /db_xref="InterPro:IPR011577" /db_xref="GeneID:6287626" /translation="MNTMSASRAEAMKTDSITRRILVWDAPTRLFHWLLALSFLGAYL TAESEQWRLVHITLGYTMAALVGFRLVWGMVGTRYARFSSFVRSPAAALRYLTSILRG RPEHHIDHNPAGALAIIALLLMACGLAGTGWATYNDVGGDWLGELHEGFANAMLALVG IHVLAVFASSWLHRENLVGAMISGRKTGLPNEGIRRAWSSVAGLMLVAVLGFWWTQWQ SAPPAGVTDRPAASAKHHDADRDDY" gene 608078..608752 /locus_tag="Rpic_0575" /db_xref="GeneID:6287627" CDS 608078..608752 /locus_tag="Rpic_0575" /note="PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bmu:Bmul_5866 two component transcriptional regulator, winged helix family" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family" /protein_id="YP_001898158.1" /db_xref="GI:187927671" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:6287627" /translation="MRILLVEDDPLLGDGIRAGLQQQGFQVDWVRDGEAAWRELRTDA YVAAILDLGLPRMDGVDVLRKVRGAGIAVPILVLTARDAIPDRVRGLDLGADDYIVKP IDLHELSARLRALVRRAHGHPTEQLRARGIVLEPASRTVFCNGRAVALSTREFDLLHA LMLNAGRVLSREQLEQCLYPWGQEVGSNSVEVHIHHLRVKLGSDLIVTVRGVGYMLPR DNAEAP" gene 608749..610125 /locus_tag="Rpic_0576" /db_xref="GeneID:6287628" CDS 608749..610125 /locus_tag="Rpic_0576" /note="PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bmu:Bmul_5865 integral membrane sensor signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="integral membrane sensor signal transduction histidine kinase" /protein_id="YP_001898159.1" /db_xref="GI:187927672" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="GeneID:6287628" /translation="MTRPRSLQGRLVLLVLGAVAGLWLITALITWYDAQDEIDQLLDS HLAQAGALLVMQHAQAVDEDDEPSHDLPVQHRYAPKVAFQVFHEGKLGIHSANAPNQP MVAPGERTASGFSTVQIGGNAWRVFVAQGVYKDIQVYVGERIDSRTAILSALLRNMLW PMALALPLLALAVWWAVKRGMLPLRRLGNALAERDPRALDPVRMPHAPVEMTPMLDAL NALFARIQTMLDAERRFTADAAHELRTPIAAIKAQAQVAMAAEEDAMRRHALVGTLEG CDRAAHLVDQLLLLSRLEANAGISIEPIDLGALARQVMADIAPIAFGKKQRIALENPE RCMVAGNRALLASLVRNLIDNAIRYSPAEAQIVVTVAHRNGSAALCVEDSGPGLPAAE QHRLGERFFRVEGTDQSGSGLGWSIVHRIAAVHGASVTVDRSPGLGGLRVDVIWSNLT SSGSGTHQ" gene 610320..611246 /locus_tag="Rpic_0577" /db_xref="GeneID:6287504" CDS 610320..611246 /locus_tag="Rpic_0577" /note="TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: reu:Reut_B5170 cation efflux protein" /codon_start=1 /transl_table=11 /product="cation diffusion facilitator family transporter" /protein_id="YP_001898160.1" /db_xref="GI:187927673" /db_xref="InterPro:IPR002524" /db_xref="GeneID:6287504" /translation="MQQIKEIDLEIAADSEDSVAKQAAARRSTLVSVAVNLGLTIAQV AAGMLAGSQALIADAIHSLSDLISDFVVLFASHHSQKGPDQTHHYGHQRFENAASLVL GLLLLAVGVGMLWNAVLKLEHAEAIQPVRLIGLWVALGALAAKELLFRYMLAVAERVR SSMLVANAWHARSDAASSLVVALGIVGNVLGYRLLDPVAALVVGLMVTRMGWQFGWEA LHDLMDRAVDEETVEAIHQVMLATTGVLGVHDVKTRRMGDMILVDAHLEVDARVSVRE GHDIALEARRRVMERRDVLNLMTHVDPVDVPL" gene 611980..612270 /gene="groES" /locus_tag="Rpic_0578" /db_xref="GeneID:6287505" CDS 611980..612270 /gene="groES" /locus_tag="Rpic_0578" /note="10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring" /codon_start=1 /transl_table=11 /product="co-chaperonin GroES" /protein_id="YP_001898161.1" /db_xref="GI:187927674" /db_xref="InterPro:IPR001476" /db_xref="GeneID:6287505" /translation="MNLRPLHDRVIVKRLDNETKTASGIVIPDAAAEKPDQGEVLAVG PGKKDDKGNAIALDVKVGDRVLFGKYAGQGVKVDGQEVLVMREEDIMAVVAK" gene 612375..614018 /gene="groEL" /locus_tag="Rpic_0579" /db_xref="GeneID:6287506" CDS 612375..614018 /gene="groEL" /locus_tag="Rpic_0579" /note="60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth" /codon_start=1 /transl_table=11 /product="chaperonin GroEL" /protein_id="YP_001898162.1" /db_xref="GI:187927675" /db_xref="InterPro:IPR001844" /db_xref="InterPro:IPR002423" /db_xref="InterPro:IPR012723" /db_xref="GeneID:6287506" /translation="MAAKDVVFGDAARAKMVEGVNILANAVKVTLGPKGRNVVLERSF GGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVRE GMKYVAAGMNPMDLKRGIDKAVGAAVEELKKISKPTTTSKEIAQVGAISANSDESIGQ RIAEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPEKQVVQLDNP FVLLFDKKVSNIRDLLPILEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTAAV KAPGFGDRRKAMLEDIAILTGGQVIAEEVGLTLEKATLNDLGQAKRVEIGKENTTIID GAGDARNIEARVKQVRAQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEK KARVEDALHATRAAVEEGIVAGGGVALLRARALISGLKGANADQDAGIKIVLRAMEEP LRQIVTNAGDEASVVVANVIAGQGNYGYNASTGEYGDLVEMGVLDPTKVTRTALQNAA SVASLMLTTDCAVAELPKDDAAPAMPGGMGGMGGMDGMM" gene 614249..615322 /locus_tag="Rpic_0580" /db_xref="GeneID:6287507" CDS 614249..615322 /locus_tag="Rpic_0580" /note="PFAM: protein of unknown function DUF898 transmembrane; KEGG: rso:RSc0643 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF898 transmembrane" /protein_id="YP_001898163.1" /db_xref="GI:187927676" /db_xref="InterPro:IPR010295" /db_xref="GeneID:6287507" /translation="MNDIARESVLGSAPAPAAPQPLRLRFIGSGSEYFRIWIVNLLLT IVTLGIYSAWAKVRTLQYFYRNTQLAGSSFDYHGSPIAILKGRAIIFVLAFAFNLLGH SSPLLGLALLIVMAAAFPWLLVRSLRFRMANSSYRGLRFAFTGKDAEGYMVFLVWPIL SVLSLYLLAPLAHQRFKRFQHKNTRFGTAQFDFSGTPGNFYGVYLRTFGLAILALVVA SCLALLLGVSLHRAPGVGQIFGFILIGLFMYAAMLFLTPYFLSRLQNVVWNHTTLGAH RFQSQVGAGKLFWIFVSNAVLILITIGLFTPFARVRTARYKLDSVTMIAAGSLDTFVA GETTNVGALGDATVDWYDIDIAL" gene 615350..616435 /locus_tag="Rpic_0581" /db_xref="GeneID:6287852" CDS 615350..616435 /locus_tag="Rpic_0581" /note="PFAM: peptidase M48 Ste24p; KEGG: rso:RSc0644 putative transmembrane protein" /codon_start=1 /transl_table=11 /product="peptidase M48 Ste24p" /protein_id="YP_001898164.1" /db_xref="GI:187927677" /db_xref="InterPro:IPR001915" /db_xref="GeneID:6287852" /translation="MILATYFDGRTSRAQPVRLAVEAGEAVLFEPEGTVLRRAPLATL RVSERVKHAPRLITFEDGAFCEITDPAEQTSLNALLHRTGYREGWVVRAQNSWKLALG SLLAMVVVLALGYRYGLPWGAKVMAGMVPQRAEAQLGRSTLKAMDERWLRPSKLPAAL QDRIRARFAALHKPPQATHTYHIVFRDADIGANAFALPGGDIVVTDALVKLVGEGDGL TGVLAHEAGHVEYRHGLRQVIQSSAIGATAALLFGDVSTILSGVPAALLTLRYSRDYE RDADRYAALLLQENGLSVAAFADVLQALEDTHGGTRKADAAKKTDAASDDDAAAFFSS HPLTRERIDTLRRFDRTHGGSDNNDAD" gene 616635..617000 /locus_tag="Rpic_0582" /db_xref="GeneID:6287853" CDS 616635..617000 /locus_tag="Rpic_0582" /note="PFAM: GtrA family protein; KEGG: rme:Rmet_0658 GtrA-like protein" /codon_start=1 /transl_table=11 /product="GtrA family protein" /protein_id="YP_001898165.1" /db_xref="GI:187927678" /db_xref="InterPro:IPR007267" /db_xref="GeneID:6287853" /translation="MMVIRVFRFGVSGVAATGMHVAIATTLINGFSASQVTANGVAFV CANVCSYLLNALWSFSAKPGRANFLRFYAVSLLCLALTLAISWLAQTLGLSYWVGLAV ILSVVPPLTFLMHRFWTFR" sig_peptide 616635..616709 /locus_tag="Rpic_0582" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.954) with cleavage site probability 0.942 at residue 25" gene 617222..618466 /locus_tag="Rpic_0583" /db_xref="GeneID:6287854" CDS 617222..618466 /locus_tag="Rpic_0583" /note="KEGG: reu:Reut_A2655 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898166.1" /db_xref="GI:187927679" /db_xref="GeneID:6287854" /translation="MRTHTKQRERGAVLPMVGLMLAVLLGMAGLVIDLSGLFVAKTEL QSAVDSCALSAAQELDGASDALTRATNAGVTAGNANRVVYQASSASLANADVTFSTAL NGTYSAAGVASSSSSYVKCKHSKSGITARLIKFVGGANSYAVAALAVATRVHAQSTCP IPVALIPKTGGTAPNYGFQVGEWVSMLYSGGSTTPGEMGWYNLDGSTNANETKTEMDQ GYCNSKIGDQLGTPGAKVSVDDNWNARFGIYKNKSNASQLQPDFTGYSYTSTNWTNTV PQNAYSGTPASGSDKSAANFKNKRLAYANYDDTGTSVSGGDKITGLNVKGGYKNLATS GSSGDLATYGVNRRVVLVPVISSASKIIDYACMLMLQPIDGVHNTPQFEFLGNAGSAS SPCSPSGLAGGSKGPLVPALVQ" sig_peptide 617222..617308 /locus_tag="Rpic_0583" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.925) with cleavage site probability 0.844 at residue 29" gene 618476..618973 /locus_tag="Rpic_0584" /db_xref="GeneID:6287855" CDS 618476..618973 /locus_tag="Rpic_0584" /note="PFAM: TadE family protein; KEGG: reu:Reut_A2654 TadE-like" /codon_start=1 /transl_table=11 /product="TadE family protein" /protein_id="YP_001898167.1" /db_xref="GI:187927680" /db_xref="InterPro:IPR012495" /db_xref="GeneID:6287855" /translation="MKTRQRQHGVALVELAIMLSLLLAITFGITEFGRAIYTYNTLAK ATRDATRYLSTQAAGNATSYATATNLAVYGTPTVGSKQAPLVPGLTSSMVSICDASNT SCTSNIAQGTNPAINTVTVTISGYTFNPVIDMMAFLRFYAGGKGSITSFPFGNISVTM RQSYE" gene 618966..619412 /locus_tag="Rpic_0585" /db_xref="GeneID:6287085" CDS 618966..619412 /locus_tag="Rpic_0585" /note="PFAM: TadE family protein; KEGG: reu:Reut_A2653 TadE-like" /codon_start=1 /transl_table=11 /product="TadE family protein" /protein_id="YP_001898168.1" /db_xref="GI:187927681" /db_xref="InterPro:IPR012495" /db_xref="GeneID:6287085" /translation="MNKHQKGTTAVEFAIVVALFLTVLLGILDFGRILFTWNAVGEAT RWGARQAVVCGQGSTSVLGKMQTILPTLTSANVSVQWYDTSGAVSTSCDATSCGGVAV SVTGMTVAPYSPATWIGFSRLAVPGFSTYLPREIMGQDPNSSSVCS" gene complement(620247..621209) /locus_tag="Rpic_0586" /db_xref="GeneID:6287086" CDS complement(620247..621209) /locus_tag="Rpic_0586" /note="PFAM: type II secretion system protein; KEGG: rme:Rmet_0639 type II secretion system protein" /codon_start=1 /transl_table=11 /product="type II secretion system protein" /protein_id="YP_001898169.1" /db_xref="GI:187927682" /db_xref="InterPro:IPR001992" /db_xref="GeneID:6287086" /translation="MQALYSNQYFILVLIFVAAFGGALGLLHLFSPNRARGRIQQIGG QTVGADLAGGPDHAWVEKLATWAKPVSQLSLPKDGWENSQLRIRFMNAGWRQPWAPSL YFAVKTVLAILLPLAALLVLSSRPEHHDQEVVLAVLGLLSAIGYYLPNAALARKVEHR QRDVFEEFPDMLDLLTVCVEAGLGLDAAMMRVSDELALRCPVMAEEMELTLLELRSGF PKEKALTNLALRTGVEDVDRFASMLIQADRFGTSLADSLRVLSDMLRTKRRMRAEEQA AKIALKLLFPLIFFIFPTLLLVLLGPAFIQIYRVLLPTMTASGG" gene complement(621275..622252) /locus_tag="Rpic_0587" /db_xref="GeneID:6287087" CDS complement(621275..622252) /locus_tag="Rpic_0587" /note="PFAM: type II secretion system protein; KEGG: reh:H16_A0710 flp pilus assembly protein TadB" /codon_start=1 /transl_table=11 /product="type II secretion system protein" /protein_id="YP_001898170.1" /db_xref="GI:187927683" /db_xref="InterPro:IPR001992" /db_xref="GeneID:6287087" /translation="MNEIFYAFAILLFAAVVLCIEGVYQWWNNYHGPEAKRVDARIRA LSAGGHIGTEQLSILKKRLLSESPQFQRWLMSLPRVSTIDRWLEQSGSAWSVAQLLGY TILTGAGVLAVGALLPVPFGIVTACALLMSALPVLHIASQRRKRLKKLEAQLPDAVDM IARALRAGHSFASALGMVGQEIKEPMGPEFHTTFEEINYGVSLDEALTNLAKRVPVND LRYFVIAVLIQRESGGNLAEILDTIGNLVRERLKLYDKIRVLSAEGRLSAWILGLLPF CTAGMILLVNPDFMKVLWTDPMGLKMIGLALFNMVMGLIWMRKIIRIRV" gene complement(622317..623681) /locus_tag="Rpic_0588" /db_xref="GeneID:6287088" CDS complement(622317..623681) /locus_tag="Rpic_0588" /note="PFAM: type II secretion system protein E; KEGG: rme:Rmet_0641 type II secretion system protein E" /codon_start=1 /transl_table=11 /product="type II secretion system protein E" /protein_id="YP_001898171.1" /db_xref="GI:187927684" /db_xref="InterPro:IPR000217" /db_xref="InterPro:IPR001482" /db_xref="GeneID:6287088" /translation="MSIREQLSRPEHGPLSMNGHAPHHHNVAGHPAYRDFKKTVHEVV LDRVDLERLARFPIEQVRHEIGTLVNNIIDEEKLLLNDTERRQMTTDVYDEMFGFGPL EPLLQDPTVSDILVNTAKQVYVERRGKLELTDVTFYDDAHLMKVIEKIVSRVGRRIDE TSPMVDARLPDGSRVNAIIPPSAIDGPLLSIRRFATNPLQVSDLIDLKTLTPPMAKLM QALSQAKVNVLVSGGTGSGKTTLLNILSGFIPADERMVTIEDAAELQLRQPHVLRLET RPPNIEGKGEITQRALVRNALRMRPDRILLGEVRGGEALDMLNAMNTGHEGSLTTVHA NTPRDALTRMENMVNMAGLNLPPKTIRQQIASAITVIIQVARLTDGRRKVISIQEITG MEGDVINMQEIFTFQRTGIAQDGSVKGHFRATGVYPKFAERLRVFGVGLPDETFDPQR HFEV" gene complement(623721..624929) /locus_tag="Rpic_0589" /db_xref="GeneID:6288421" CDS complement(623721..624929) /locus_tag="Rpic_0589" /note="PFAM: response regulator receiver; KEGG: reh:H16_A0712 flp pilus assembly ATPase" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_001898172.1" /db_xref="GI:187927685" /db_xref="InterPro:IPR001789" /db_xref="GeneID:6288421" /translation="MLKILIASEDGERLADLARLVAAAGSYQVMHLHAAPGSLSTHAC QLRGADALIIDQPSGGPSQMLSIELLRQQFADLPCILVTQTQERDDLIRALRAGVSDI LTWPLERAQLTTALTRLETNHTPRTREEARVIAFISSKGGAGSSFIASNVGYTLAAHE HKRVLLIDLNTQFSDTHFLVSNKTPPATLSEVCAQVDRLDDAFLEACLTRVAKDFDVL AGASDPIKAGEIKKDKIEYVLSLVSPIYDFILVDVGQAINPLSIAVLDHCDQICVVVQ PTIAFARTGRRLLDILHGLHYPPEKLRILVNRHGKRDELPRSTLEQVFGQKLFHVLPE DAAAVDDSICQGMPIAQHHRSSAMTKALMALGNVFATARENDRHASQEKGFSLSKFFS RAKTSSPNIA" gene complement(625046..625384) /locus_tag="Rpic_0590" /db_xref="GeneID:6288422" CDS complement(625046..625384) /locus_tag="Rpic_0590" /note="KEGG: rme:Rmet_0646 putative lipoprotein" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="YP_001898173.1" /db_xref="GI:187927686" /db_xref="GeneID:6288422" /translation="MNTNLKYLQRAALVILACQALTACMTTTPNWDKHFGEAVTSVKQ AQVINPDAPAGLPALDGYDGKAAVAAMSNYDRSMTRFPAGGTGTGSGGYGGFGGSGYG GSGMSGSFSR" sig_peptide complement(625046..625117) /locus_tag="Rpic_0590" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.891) with cleavage site probability 0.626 at residue 24" gene complement(625410..627401) /locus_tag="Rpic_0591" /db_xref="GeneID:6288423" CDS complement(625410..627401) /locus_tag="Rpic_0591" /note="PFAM: type II and III secretion system protein; transport-associated; KEGG: rme:Rmet_0647 type II and III secretion system protein" /codon_start=1 /transl_table=11 /product="type II and III secretion system protein" /protein_id="YP_001898174.1" /db_xref="GI:187927687" /db_xref="InterPro:IPR001775" /db_xref="InterPro:IPR004846" /db_xref="InterPro:IPR007055" /db_xref="GeneID:6288423" /translation="MKTNQKTNGANVTLRGVQVLGSTRMLILASAAGAMLCMPTHATA QAAMEAGAVAKSTTAPVVMQSRAGASAPVQMTISMNPALATAPVADVRGPNCTGAVRG ESSVVVPVGKSSLISLPEPVRNRTLGNPAVVQATMVSPQSMYLLGRSVGTTNMIVQGR SGACSIVNVVVNADAGGLQTSLAQLMPGENKIRVMTAADSLVLAGNVSSAQAAQQAME IAHAYAASAQSGADKGGGAAGALGGGGAAGGANVINMMIVDTPQQVMLEVKVAEVSKT LLNQLGSALNVQGGFGSWSGGLLTSLLTGSSTGFFANKANNRPFQVELDAQKNDSLVK ILAEPNLVTLSGQEASFLAGGKIYIPVAQSSSSGGAPTITLQEEEYGVGLKFTPTVMA NGRINLKVAPEVSELSPTGATVTGANTNGQTILPLITTRRASTTVQMRDGESFAIGGL LQDNARGSLKALPGAGEIPVLGTLFRSTQFQHDLTELVIVITPRLVQPMQTASYPLPT DSFSTPNELAVYLTGNMEGSGAKNRAAKPATAAAPATAPQVPAQVPSAPAAPSSQAPM PAPVAPAPVAPVIPAPRTEVSIAPPTQPANGAPEKPAAAQPVWETAPVTTSATAPTDD NAARVARIEATAARLAQARTKTQGRQTAVADTTTTPQTR" sig_peptide complement(625410..625544) /locus_tag="Rpic_0591" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.522 at residue 45" gene complement(627517..628368) /locus_tag="Rpic_0592" /db_xref="GeneID:6288424" CDS complement(627517..628368) /locus_tag="Rpic_0592" /note="TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: reh:H16_A0718 flp pilus assembly protein" /codon_start=1 /transl_table=11 /product="Flp pilus assembly protein CpaB" /protein_id="YP_001898175.1" /db_xref="GI:187927688" /db_xref="InterPro:IPR013974" /db_xref="GeneID:6288424" /translation="MKNARAIVMLIVALVAGIAAVVSASRWLSQQSTSSVKQVVVAAS DMDLGQPLGNEQLRTVSWPAGSLPPGTFDDPKALQGRVVRASLQKGEPILENKLAPIG TKGGLSAVIAEGKRAITVRVNDVVGVAGFALPGNLVDVIVNTNEDAKSASNNNNSISK IVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDVARSVGTLSLVLRNQVD VAATATGGATKGTLLGTPAAEPAPKVVMVSTTRATAKVRHVASGPIRQRDCIGVLAGV QGSMECF" sig_peptide complement(627517..627591) /locus_tag="Rpic_0592" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.558 at residue 25" gene complement(628418..629917) /locus_tag="Rpic_0593" /db_xref="GeneID:6286645" CDS complement(628418..629917) /locus_tag="Rpic_0593" /note="KEGG: reh:H16_A0719 predicted ATPase with chaperone activity" /codon_start=1 /transl_table=11 /product="ATPase with chaperone activity" /protein_id="YP_001898176.1" /db_xref="GI:187927689" /db_xref="InterPro:IPR013838" /db_xref="GeneID:6286645" /translation="MRDLHIWARTSYSLSQMVMKMIGDQKIEHTEFGHAQHAPRSLEA VPSPTGLDAARREPAAPWHILPRTVAETGLDISLLLGLLMKVAYLHRSATLVMLMDTI KLPAMVINEVAAYAVRERMLEVAHRGANDLDVRFHLTDAGYVRAAEFTARCSYVGAAP VTLEAYVESVQRHSIQFASLSKTDVTAAFSTFVMPPDLLDDVGVALNTSRALMLYGPA GGGKTYLAQHLGMLLPGTVPVPYAITIAGEIIQIFDPLVHVAQEDEDGPVARRPLDRR WQMCHRPAVLSGGELTLEMLELRYDGTTGFYQAPPHMKANCGIYIVDDLGRQQVGVSE LLNRWIVPLDRRVDMFSLRNGVRFSVPFDVWPVFSTNLEPAQLGDDAFLRRLGSKLYV GPLSVADYREVYLRAAQDLGLQNADAAFDYLREALHEVSGKPLLACIPRDLLRLVASA VQYHGGPSEVTAEALRRAWDIYFCSHTDFKATDSMSAGMGWRQDKQAHT" gene complement(629917..630462) /locus_tag="Rpic_0594" /db_xref="GeneID:6286646" CDS complement(629917..630462) /locus_tag="Rpic_0594" /note="PFAM: peptidase A24A prepilin type IV; KEGG: rme:Rmet_0650 peptidase A24A, prepilin type IV" /codon_start=1 /transl_table=11 /product="peptidase A24A prepilin type IV" /protein_id="YP_001898177.1" /db_xref="GI:187927690" /db_xref="InterPro:IPR000045" /db_xref="GeneID:6286646" /translation="MNDATLLSSMIGPVAMGVALIAAAIDAQHRRIPNWLTFGAWLAA LPLQVAVHGFGNGALEWTCGWLTGLAIFLPFYLLRGMAAGDVKLMAAVGAWLGAFMAF EIAMATFVIGGIWALLFTLRHKRMAQLRRNLRDVLLTSGQVSREAGAPTPQADASWSV GTLPYGVAIAAGTIAVLFASA" sig_peptide complement(629917..629991) /locus_tag="Rpic_0594" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.931) with cleavage site probability 0.578 at residue 25" gene complement(630552..630722) /locus_tag="Rpic_0595" /db_xref="GeneID:6286647" CDS complement(630552..630722) /locus_tag="Rpic_0595" /note="PFAM: Flp/Fap pilin component; KEGG: rme:Rmet_0651 Flp/Fap pilin component" /codon_start=1 /transl_table=11 /product="Flp/Fap pilin component" /protein_id="YP_001898178.1" /db_xref="GI:187927691" /db_xref="InterPro:IPR007047" /db_xref="GeneID:6286647" /translation="MHKPINPRKWLRDDQGVTSIEYALLGSLIAIVILGSVVALGSGV KSLYEMIAAAIP" gene complement(630769..630939) /locus_tag="Rpic_0596" /db_xref="GeneID:6286648" CDS complement(630769..630939) /locus_tag="Rpic_0596" /note="PFAM: Flp/Fap pilin component; KEGG: rme:Rmet_0652 Flp/Fap pilin component" /codon_start=1 /transl_table=11 /product="Flp/Fap pilin component" /protein_id="YP_001898179.1" /db_xref="GI:187927692" /db_xref="InterPro:IPR007047" /db_xref="GeneID:6286648" /translation="MNRYSTLLQQFLYDEQAVTAIEYGLIAALIAVVIIASVQLVGTN LSTVFSNIAAAL" gene complement(631088..631255) /locus_tag="Rpic_0597" /db_xref="GeneID:6289273" CDS complement(631088..631255) /locus_tag="Rpic_0597" /note="PFAM: Flp/Fap pilin component; KEGG: rme:Rmet_0653 Flp/Fap pilin component" /codon_start=1 /transl_table=11 /product="Flp/Fap pilin component" /protein_id="YP_001898180.1" /db_xref="GI:187927693" /db_xref="InterPro:IPR007047" /db_xref="GeneID:6289273" /translation="MNYLNALKQFARDEDGVTAIEYGLIAALIAVVIIASVKLVGQNL STVFSNIAAAL" gene 632221..633492 /locus_tag="Rpic_0598" /db_xref="GeneID:6289274" CDS 632221..633492 /locus_tag="Rpic_0598" /note="KEGG: rme:Rmet_0654 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898181.1" /db_xref="GI:187927694" /db_xref="GeneID:6289274" /translation="MSQRSVRLPATRSAAAAIRATVEHAAGHWIDLARVRAYSGALLV LFCVLLLGWAWTSNGFTDVTMARPGTDFSAFWGASYLALTQGPLQAYDVRQLTAVIAE HGTLGRGAELILPWLYPPTFLLMVLPLSLLPLTLSYLLFLAGTGLVYFKSIGMLTGAQ HPWRQGLWLPVLAAPATLITILAGQNSLLTAGVAGAAVYHLNKRPVLAGVLIGLLAIK PQLAVLFPLALVISRAWKALASALLTTVVFASVSVLVCGWRTVPAFLANAQWVRASFI EGGANLWWGMPTPIAAARLAGASVTGAYAVQVLTALAMAAAMAYVWRRTTAFELRAAA LAIATLMVSPYLRDYELTWLGLAIAGLVGDGVRDDSANGLSSGDRALLVVAWLLPLYE HANPYLKLPQFGPAVLIAMMALVVRRVATRA" gene 633500..634816 /locus_tag="Rpic_0599" /db_xref="GeneID:6289275" CDS 633500..634816 /locus_tag="Rpic_0599" /note="KEGG: rme:Rmet_0655 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898182.1" /db_xref="GI:187927695" /db_xref="GeneID:6289275" /translation="MAVALNLLKHRAPEATTAPPETAPGARHWLGPDRVRVYSMAALA CYVAYFVIWAVRASVLKVAGVFPLGGDFLVFWSAAQLVLQGHPPAAYDVAVLHNVELA TVPLVATTQGLLPWFYPPTFLPFIAPFGLLPYWLAVLVFLSMSVGCFLWVVGRIVLWR QAWLPCAAFPGIAVVLATGQNALLLAACAGLALTLLHSPRPKRPPSPIAAGMLLALLT VKPQLAVMFPVALMCAGAWKTLIAMALTSLALAVLALAAFGPQSFIAFLHNAALARSA VEAGAVHLERMPTLFAMVKMLHGSVMLAYVLHLIGGFTACAAVAYAWSRPCSFALRAA AVLTASMLASPYLYDYDLAFLGLAIAWLASYALRDGWLPGEREGLILLWLLPLGGMLL IDRLGFQLMPLVLLLALAHIARRIHLERTRNASRSRVPRRLGRGEQ" gene 634816..635829 /locus_tag="Rpic_0600" /db_xref="GeneID:6289276" CDS 634816..635829 /locus_tag="Rpic_0600" /note="PFAM: glycosyl transferase family 2; KEGG: rme:Rmet_0656 glycosyl transferase, family 2" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_001898183.1" /db_xref="GI:187927696" /db_xref="InterPro:IPR001173" /db_xref="GeneID:6289276" /translation="MLDYKRNQLLSLVVPFYNEGEALESFFARVVPILESVEFMQFEI VCVNDGSKDDTLQKLIAVSRMDERVRVIDLTRNFGKEAALTAGIDEALGDAVIPIDAD LQDPPELIPTLVAHWQKGAEVVLAQRASRACDTFLKRVTAAAYYRVHNTLSDLKLPEN VGDFRLMDRAVVNALKQLPERHRFMKGLFAWVGFNTVIVPYEREARSAGQSKFSGWRL WNFALEGITSFSTWPLRSWTYIGLAIASLAFVYGSYIIARTMVLGVDVPGYASLLSLL LFFGGLQLIGLGVVGEYIGRIYDEAKGRPIYLVKRRYQERRLRNRLTGERRVIQMVRG QRG" gene complement(636086..637147) /locus_tag="Rpic_0601" /db_xref="GeneID:6286348" CDS complement(636086..637147) /locus_tag="Rpic_0601" /note="PFAM: acyltransferase 3; KEGG: azc:AZC_3119 putative acyltransferase" /codon_start=1 /transl_table=11 /product="acyltransferase 3" /protein_id="YP_001898184.1" /db_xref="GI:187927697" /db_xref="InterPro:IPR001128" /db_xref="InterPro:IPR002656" /db_xref="GeneID:6286348" /translation="MRTTVTSLEGLRGVAALFVVFHHMCYAPPHRQFDSAYLCVDLFF VLSGFVICRAYGGQLTSRTQLRTFAIRRVGRLWPAHIATSALAIAFAYRVPSVGEVLA LVTMSQGLNLFPNGVGNLVGWSISDEMFVYLAFGALCFLLQGKARIAGFAALALIGYA LAVWITLSIDRCMLTGKCLGMTFNFGWTRCLAGFFIGALICEFRDRVAALARGRAIQL TASAASLSMVMFANDLPGSALFAPLVFATLIGSLLADRGPIANLLQTRPAQYLGKVSY ALYLGHGVWFLQMLSATTGTGLNDRLIPYALFLFWTFGIAHLLHKYVEVPFRDRFNRW AQSSAQATPVYSQIKEPQQ" gene complement(637157..638257) /locus_tag="Rpic_0602" /db_xref="GeneID:6286349" CDS complement(637157..638257) /locus_tag="Rpic_0602" /note="PFAM: acyltransferase 3; KEGG: azc:AZC_3119 putative acyltransferase" /codon_start=1 /transl_table=11 /product="acyltransferase 3" /protein_id="YP_001898185.1" /db_xref="GI:187927698" /db_xref="InterPro:IPR002656" /db_xref="GeneID:6286349" /translation="MNRSFEGLRGIAALFIVVHHMFCAWPHPLSANAYLAVDLFFVLS GFVISSACGPQLSNLASLRTFMIRRIGRLWPTHIATTVLALIVARHLPAFGETLALAT MSQGLNVFQAGIGNAVSWSAGDEMYVYLLFGAGCILMRGRTRMVVFAALALTAWPLAA WIEIDRACLLQGGCLSKLVHQFGWLRCIAGFFIGALIYEFRDRLIPWASHPVFQVTAF SAALFLLISADALPGSALTAPLTFGALIGALISDRGPVSRILQTPAAQYLGKVSYPLY LTHGVMLPLVVSMPADVGLKQQLVTYALFLFWAFASTSLLHNYVELPFRNRFNRWAQA MPGAAIPTAQGVAGVRLHEHQHSVIGNQNKQA" gene complement(638254..639582) /locus_tag="Rpic_0603" /db_xref="GeneID:6286350" CDS complement(638254..639582) /locus_tag="Rpic_0603" /note="KEGG: rme:Rmet_0657 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898186.1" /db_xref="GI:187927699" /db_xref="GeneID:6286350" /translation="MSVSQQGTARVDPAPKSRGGGWQGSRRLYVYGGALLFLEYFLLG VWWWGHHILQNTTIPSPGWDLAVFWSAANLAITHGATTAYDWGLLRATEAAILPPDIF GPFSYPPTFLLLIYPIGVLSFGAATVAFSGCGIALYLGMLNKTLRSVPGALRLPWLIP ALAFPGVWVTLVTGQNSLFTAAAAGAALVLLRRSPVAAGACIAMLCIKPQLGILFPLY LLCERQWRTLAAAAFFSTLTLAVSWLAFGTATFVAAARSMAMFRHAIVENGGVILYGA PTVFGTLRSAGYSTTVSYAAHAGVAMLVIAVCVWLWRSACRFELRAASLPVATLMVQP YLIYYDLAWLALPMAWLAVDFVRYSSNRFENAVLLAAWLVPAQGLFAVLSHRTGQWAP IVLVALLAIIVRRARAPQRVIAPHESFDAATPPVAAIGAHASNPARGTTA" gene complement(639628..641007) /locus_tag="Rpic_0604" /db_xref="GeneID:6286351" CDS complement(639628..641007) /locus_tag="Rpic_0604" /note="PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: rme:Rmet_0659 sigma54 specific transcriptional regulator, fis family" /codon_start=1 /transl_table=11 /product="sigma54 specific transcriptional regulator, Fis family" /protein_id="YP_001898187.1" /db_xref="GI:187927700" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="GeneID:6286351" /translation="MNAYINRPLLYVSLRHDATRCRYLAQQGWQLLFANNRRDLEALN LCEESVLGGLLDLDCGYSDTELEELEPWLARQNIGWIGVVGNGDMLSDPMRKLLGLYF VDYYNIPCDSAELAHALGHAVGMAHLRPAATLTRDTLRPDGMIGNCLAMQGLFRGIEK VSKWDTPVLVSGESGTGKELAARAIHCASRRAGQPFIAVNCAAIPPTLLMSELFGYER GAFTGAVKRKPGRIEMAHGGTLFLDEIGDMPLESQTSLLRFLETGCIERLGGTESVAV DVRVISATHVDLEAAIAAERFRGDLYHRLCVLRVKQPALRERDTDILLLAEHILNSVR SHSPEHIKGFSPTALRALSVHTWPGNVRELINRIRHAAAMCEDGIIKPADLDLQPPVE PSRPPTLAEAREAAERCAVKEALQRNHERLIDVAEELGISRVTLFRMMREHKLQIRKG ELGMVCVQG" gene complement(642134..642658) /locus_tag="Rpic_0605" /db_xref="GeneID:6288174" CDS complement(642134..642658) /locus_tag="Rpic_0605" /note="PFAM: protein of unknown function DUF477; KEGG: rso:RSc0662 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF477" /protein_id="YP_001898188.1" /db_xref="GI:187927701" /db_xref="InterPro:IPR007621" /db_xref="GeneID:6288174" /translation="MASTTRHHHGARRALTHLLTTSSHARRAFPPADLQKLEAAVREG EQHHRGEVRVVIESSLPVRDAWAGMSPRHRARTLFGLLEVWNTREHVGVLLYINLADH AVEILADHGIAAKVDAHAWRTICATITRGFAQRVTMAPVLDALAQINDLLAAHVPSDG TPRTNELSDRPVVL" gene complement(642674..643537) /locus_tag="Rpic_0606" /db_xref="GeneID:6288175" CDS complement(642674..643537) /locus_tag="Rpic_0606" /note="PFAM: protein of unknown function DUF477; KEGG: rso:RSc0663 putative glycine rich transmembrane protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF477" /protein_id="YP_001898189.1" /db_xref="GI:187927702" /db_xref="InterPro:IPR007621" /db_xref="GeneID:6288175" /translation="MSMRARACFTLLLTVALWLATALPARAQSDMVAVPPLAARVTDL TGTLSAEQKSALEQVLADYEQQRGSQIFVLMVPSTAPEPIEAYGIRVADAWKAGRKGV DDGAIILIAKDNPASLRKMRIEVGRGLEGALTDAQSKRVLQDVMAPHFRQGDFYGGLS AGISAIQTVIALESLPPAERAKRQQSGGGIGDWLPVLFPLAIIVFFVLSAAMRSGGRV TGSLPGRPGSRVVMGNRGWGPGTIGGLGGGLGGGWGRGGGDFGGGGGGGGGFSGGGGG DFGGGGASGNW" sig_peptide complement(642674..642757) /locus_tag="Rpic_0606" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.993 at residue 28" gene complement(643551..644177) /locus_tag="Rpic_0607" /db_xref="GeneID:6288176" CDS complement(643551..644177) /locus_tag="Rpic_0607" /note="PFAM: LemA family protein; KEGG: rso:RSc0664 probable lipoprotein" /codon_start=1 /transl_table=11 /product="LemA family protein" /protein_id="YP_001898190.1" /db_xref="GI:187927703" /db_xref="InterPro:IPR007156" /db_xref="GeneID:6288176" /translation="MTPALTFRSTRFSVLRWLALSLAVLAAPFLSACGYNDFQAKDEA TKAAWAEVVNQYQRRADLIPNLVNTVKGYASHEKDTLEAVTKARAAATSFQITPEVLN DPAAFQKFQQVQGELSSALSRLMAVSENYPQLKADQSFRDLQSQLEGTENRITVARQR YIKSVQDYNVLTRSFPTNLTAKVMGYQVKPNFTVENEKGISTAPAVKF" sig_peptide complement(643551..643649) /locus_tag="Rpic_0607" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.796 at residue 33" gene complement(644283..644486) /locus_tag="Rpic_0608" /db_xref="GeneID:6288177" CDS complement(644283..644486) /locus_tag="Rpic_0608" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898191.1" /db_xref="GI:187927704" /db_xref="GeneID:6288177" /translation="MSNVSVNRCSVAHLTEQRSGQTSGCLVAFLARASVDTTDRLKAG AVQIDEEREITRMEIVKKVSIPY" gene 644579..645487 /locus_tag="Rpic_0609" /db_xref="GeneID:6287896" CDS 644579..645487 /locus_tag="Rpic_0609" /note="TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: rso:RSc0665 probable dihydrodipicolinate synthase-related transmembrane protein" /codon_start=1 /transl_table=11 /product="dihydrodipicolinate synthase" /protein_id="YP_001898192.1" /db_xref="GI:187927705" /db_xref="InterPro:IPR002220" /db_xref="InterPro:IPR005263" /db_xref="GeneID:6287896" /translation="MLENSSTNLSTNERPSYAGIWVPIVTPFADDAARSVDYGALYTL VMRYRALGAAGFVACGSTGEAAALTDQEQADVLDTVRAAADGLPVVMGVSGSALASVR ERMLRLAEHRPAAFLIPAPSYIRPSQRGIIEYFTALADASPVPVLLYDIPYRTGAHID TETLLALAAHPNIHGIKDCGGDADKTQRLIADGRLQVLAGEDAQVFGTLCAGGVGAII AAAHVRTELFVEMARAVQEQRLNDARRLHHALAPVIRLLFAETNPGPLKAWLAAEGLI RNVLRAPMMMASEGLGRELVGVVGRV" gene complement(646030..647331) /locus_tag="Rpic_0610" /db_xref="GeneID:6287897" CDS complement(646030..647331) /locus_tag="Rpic_0610" /note="catalyzes the formation of 5-aminovulinate from (S)-4-amino-5-oxopentanoate" /codon_start=1 /transl_table=11 /product="glutamate-1-semialdehyde 2,1-aminomutase" /protein_id="YP_001898193.1" /db_xref="GI:187927706" /db_xref="InterPro:IPR004639" /db_xref="InterPro:IPR005814" /db_xref="GeneID:6287897" /translation="MSTPSRSAALFERAQKTIPGGVNSPVRAFRSVGGIPRFIAKAAG PYLWDADGTRYIDYVGSWGPMIVGHAHPEVVRAVQEVAADSFSFGAPTEAEVVMAEEI CKLVPSIEQVRLVSSGTEATMSALRLARGFTGRDLIVKFEGCYHGHADSLLVKAGSGL LTFADTTQNAPSSTGVPEDVVKHTMVLPYNDVAALREAFARHGKEIAAVIVEPVAGNM NLVRGSNEFHQAMRALCTEHGAVLIFDEVMTGFRVALGCAQALYGIKPDLTCLGKVIG GGMPAAAFGGRRDIMGFLAPLGSVYQAGTLSGNPLAVAAGLTTLRLIAAEGFHDRLAT QTRKLVDGLAEIAREVGVPFAADSVGGMFGIYFREGVPTSFAEVTKSDVGRFNAFFHA MLDQGVYLAPSAFEAGFVSSTHDDAILDATFEAARKAFKAV" gene 647546..647728 /locus_tag="Rpic_0611" /db_xref="GeneID:6287898" CDS 647546..647728 /locus_tag="Rpic_0611" /note="PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: rso:RSc0667 probable rubredoxin protein" /codon_start=1 /transl_table=11 /product="Rubredoxin-type Fe(Cys)4 protein" /protein_id="YP_001898194.1" /db_xref="GI:187927707" /db_xref="InterPro:IPR001052" /db_xref="InterPro:IPR004039" /db_xref="GeneID:6287898" /translation="MEQQIEYKTWMCLICGWIYDEEQGAPDDGIAPGTKWEDVPINWT CPECGARKEDFEMVQI" gene 648060..648518 /locus_tag="Rpic_0612" /db_xref="GeneID:6287899" CDS 648060..648518 /locus_tag="Rpic_0612" /note="PFAM: response regulator receiver; KEGG: rso:RSc0668 probable twitching motility two-component response regulator transcription regulator protein" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_001898195.1" /db_xref="GI:187927708" /db_xref="InterPro:IPR001789" /db_xref="GeneID:6287899" /translation="MQSARVEQLADSQPLANSPLAHSLTGCKVLVIDDSSTIRRTAQI FLTQAGCQVVLAEDGFDALAKVGDLKPDLVFCDILMPNLDGYQTCSLIKKSPKFHATP VIMLSSRDGIFDRARGKSVGAVDHLAKPFSKEALLEAVQTHLPVARAAAQ" gene 648549..648917 /locus_tag="Rpic_0613" /db_xref="GeneID:6287117" CDS 648549..648917 /locus_tag="Rpic_0613" /note="PFAM: response regulator receiver; KEGG: rso:RSc0669 putative twitching motility two-component response regulator transcription regulator protein" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_001898196.1" /db_xref="GI:187927709" /db_xref="InterPro:IPR001789" /db_xref="GeneID:6287117" /translation="MAIKKVLVVDDSPTEALHLSEILGKNGFKVTVAADSEQAMTKLE AETFDLILMDVVMPGQNGYQATRAIKKDERFQGIPVIMCTTKGLETDRVWGMRQGASD YIVKPVKAEELLEKIAKLAQ" gene 648994..649539 /locus_tag="Rpic_0614" /db_xref="GeneID:6287118" CDS 648994..649539 /locus_tag="Rpic_0614" /note="PFAM: CheW domain protein; KEGG: rso:RSc0670 putative twitching motility protein" /codon_start=1 /transl_table=11 /product="CheW protein" /protein_id="YP_001898197.1" /db_xref="GI:187927710" /db_xref="InterPro:IPR002545" /db_xref="GeneID:6287118" /translation="MNEQRTNLTSRQRLHEYQAMLARRLQEARAKSATEGFLGVQIGE HHWLLSLTETGEVLDYQPPARVPLTQPWYLGLVNARGNLLGVIDFGLFCGEAPTGSGS GAKIVVLSKDPQRACAIVVPRVAGLRSLSDLQPAEATAEEGRPWLGRAWRDAQGTQWR ELDVRQLLADPAFLQVGRSRT" gene 649798..652035 /locus_tag="Rpic_0615" /db_xref="GeneID:6287119" CDS 649798..652035 /locus_tag="Rpic_0615" /note="PFAM: chemotaxis sensory transducer; KEGG: rso:RSc0671 putative twitching motility transmembrane protein" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_001898198.1" /db_xref="GI:187927711" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="InterPro:IPR004090" /db_xref="GeneID:6287119" /translation="MGFKWFNAGRRAGEAGAPEVAAEGASAASVQLAQLDNASHTDDD NPAGTPTQLGRSPMDAVVGWMERVPFAAQQRVFTIGLVVGLLALLISVYLDNRQANNG SVQIEIAGDTLMHSQRLAKAVPVALLGNTNAFAQLKESRARLQENLDALKNGNSERGV RASGGEAEALLDKSIEEWKRSDKSAQAILAQEKTLVAVGKTLNVFNASNPELLEEAEQ ISSMKLQTNAPAREVAASSQLVMLTQRLGKNMNEFLAGEGVNPETAFLLGKDTNTFRE TLNGLLNGSEALRLSAATDAETKGYLQELSTRFDNVQKTTQIILENLPGLIAAKRAQQ QIFNDNEKLRADLSDLQSAYAGSVRSRPMTLGAVVLSAILTVVCLAGLAALYLRDSRV RTMEAEARQREAEERRMVEKRNNDSTQAAILRLMNELQDIADGDLTKQATVSEDITGA IADSVNYTVEELRELVGRVQQTAEQVTQASSAVQTTSESLVAASEEQSRQIRQTGQSV VEMADRITQVSRGAAESANVARASLAAAEQGQQAVQNAITGMNDIRDQIQETSKRIKR LGESSQEIGEIVELISDITEQTNVLALNAAIQAASAGEAGRGFSVVAEEVQRLAERSA EAAKQIGALIRTIQTDTQDAVHAMERSTAGVVEGAKLSDNAGAALVEIGRVSRQLAEL IESISQTTSHEATLASDVAQNIEQILHITEQTSTGTRQTAQSVRQLTQLAEELRDSVA RFRIA" gene 652126..658155 /locus_tag="Rpic_0616" /db_xref="GeneID:6287120" CDS 652126..658155 /locus_tag="Rpic_0616" /note="PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: rso:RSc0672 putative composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein" /codon_start=1 /transl_table=11 /product="CheA signal transduction histidine kinase" /protein_id="YP_001898199.1" /db_xref="GI:187927712" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR002545" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR008207" /db_xref="InterPro:IPR008208" /db_xref="GeneID:6287120" /translation="MRHQSSAQPESASVEAVGAPAGRQKSGPKPAVPARDLSALAWVA PNMRAALDDAVREFGEYAADVIADPEVIGARDTTSLRLAGQYLHQAAGALLIVGLRGV DVYCQAAKRLLEAVDAGSVAADAQTLDVFSRAVQALQEYVSDLMAGMAEEPLRLFQPY QAVLSRLGEERIHPADLWADELRHLPALLLPSRDLPGLARLRRKFELALLTALRAPAS NADGAVVDPSAAAAAYAPLEDLLHGIRALEREPRRAGDDLQRDLWLVLALTFGALRAG LVPADMTAKRLAARVNLLLRQYSHNNVHLPQGLLTDALYLLAGMAYSNAPAVPVGDDT LGPDIVACVQAFAIPPTHAPAGALHTRQYYALLPTDASDTLQRVGRSLETLSQQPAPA ADELDAALQTLALHADALGQPALSDLSNRLTEAAGQDVAPTLQFLSRMLARPWAVHGE SGDLRSAWFAARCSELAEHARATQDGHAVPAPAWLTLLAEEAAQRRAHAEQVRALQTL LASAETHLDAFEREGVESGGLQEAARLFGEMQTAFAALDAYEAVHATEAAQSTINALQ AAGEGATADRERYLAALAANVSGLQALLDALSAGTELAGGQVDEIVIEGQLTPTERET AWREFAFDTESGMLARREPQSETLVGADIANADAASPLQSLLDRLLAKQPVDPSDPLA AELRTALQEARDAAAIDDDPARRRRLEEALAQFDAWQVGSPGALERMQAALAAPVAAP AAAAPAPTAARDTQSIDAELLDIFLSEAEEVLAGVRADLQGLQAAADMGTGGLAAGSD LDLLTQLRRAFHTLKGSGRMVGLTRYGEAAWAIEQVMNVWLAENRVPTHDLAALLTRA ESELSTWAAAIAQSPQADHAIEPLVAAAERVRHGGPFVWLEAVPETQAAPEHAEPQVP EAPAAEPALHDIDAMQPMELTAPDVPVAEAEEAVALQWEDEPALPDVEAPMPEATAPL VEHEAVEPAAEHVEETIQDAAAEPVAADADAKVIPFPFAQTGELEEAPHDDGVKEIGP VRISVALYNVYLQEADDLIRRLGVDFSEWRHEGRTPPSELALRAAHTLQGSSAVVELE PVRQLAGALEQVLLNLNSRPVAMHPGDFRLLDQSIERMRGMLHQFAASLWPDADEPLR RSLDELCERLLVRPRLPLEPAPTAFTEAEQAENETPSQAGEPEFEPAQVAPTFVPVHE SPVAEPAVGELVRQAPADALDPALLEIFLEEAHVALPELGQHLRAWEAAPQDRNAAGL LLRNLHTVKGSARMAGAMTLGQAAHEMESAIEGGLRQNRVDGALFRKLYVWFDRIQAH VDALGAGNLLPLDAGLADAADTQQTAADAHASSGASMLPAVAVSTNVDLTGTRSPEAE ALEVAERQRAMVRVQARALDSLINDAGEVGAARARLESEVDALKTYLSELNDNVARLR SQVREIEIQAETQMESRIADAAAHSESFDPLEFDRFTRLQELTRMMAESVNDVATVQQ NLFRGFDQASLDLETQARLTRGLQRSLMRARMVQFDTVADRLYRVARQAAAETGKEVR LFIKGGTVELDRSVLDRMGGPLEHMIRSAVAHGIESADERRAKGKNPAGELTLEVQQE GNEVVLHFVDDGAGLNLDRIRARALERQLLAADEEASDARLTEMIFTPGFSTADQVSE LAGRGVGMDVVRAETVALGGRISLQTTPEVGTRFTIHLPLTTAITQVLLVRVNERVYA IPSGMIDHVQQLRPQALAEAYNAAALQLPTGPVPFHYFGALLEEATSVTGARKYSPAV VVRNGAERAAVHVDEVIGNREVVVKHIGPHLARLEGIAGATTLGDGEIVLIYNPVVLT QRFEREAAARGPSDQEATGAVAELHRDGSIDAVPGLATQPIVMVVDDSLTVRKVTQRL LTRSGYQAVLARDGVDALRQLQEVTPDAMLVDIEMPHMDGFDLTRNVRADERIGATPI IMITSRTADKHRRYAAEIGVNVYLGKPYNEEELLQHLRNLIGERAPAARAG" gene complement(658227..659783) /locus_tag="Rpic_0617" /db_xref="GeneID:6288477" CDS complement(658227..659783) /locus_tag="Rpic_0617" /EC_number="4.1.99.3" /note="PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: reu:Reut_A0703 deoxyribodipyrimidine photolyase" /codon_start=1 /transl_table=11 /product="Deoxyribodipyrimidine photo-lyase" /protein_id="YP_001898200.1" /db_xref="GI:187927713" /db_xref="InterPro:IPR002081" /db_xref="InterPro:IPR005101" /db_xref="InterPro:IPR006050" /db_xref="GeneID:6288477" /translation="MPSTAPSRQPYNIGAHFQRGLVWFRRDLRHFDHAALHYALRHCR EVYCVFVFDRDILDALLARGLQADRRIEFIRASIEELRSALREAGGDLMVVHDHPRHA IPEIARKLNIEAVFANHDEEPSAQARDEAVRKVLAQQPCAWFDFKDQVIFERDEILNG QGRPYGVFTPYKNAWLAALTPFDLRAYPTEPYLGALARPPEALAHPTPALEAMGFAHT NLSEIALPTGMSGGQALLDEFEDRMDDYHARRDFPAVRGPSYLSTHLRFGTVSIRTLA ARAHAAMLRGSRGAATWLSELVWRDFYFMILHHRPDLADGAAFHPEFDRIRWVDGDTG DARFEAWKGAQTGYPLVDAAMLQIFQSGYMHNRLRMVAASFLIKDLGIDWRRGEQYFA DVLNDFDFSANNGGWQWAASSGCDAQPWFRIFNPVTQSEKFDPQGRFIRKYLPQLAKL PDKYIHAPWTAPANVLKEAGVVLGETYPRPIIDHAGARAATLDRYAVTKAHRTSGAEA AAMSKSSNDD" gene 659863..660609 /locus_tag="Rpic_0618" /db_xref="GeneID:6288478" CDS 659863..660609 /locus_tag="Rpic_0618" /note="PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rso:RSc0674 probable ribosomal small subunit pseudouridine synthase A protein" /codon_start=1 /transl_table=11 /product="pseudouridine synthase" /protein_id="YP_001898201.1" /db_xref="GI:187927714" /db_xref="InterPro:IPR000748" /db_xref="InterPro:IPR002942" /db_xref="InterPro:IPR006145" /db_xref="GeneID:6288478" /translation="MADSSRLPLYRILQSQGFGTRRYCKDLVLAGLVFINGVEMESPD ALVDTAGLVLDVDGERWAYHARAYLMLNKPAGVECSQKPKHHPSVYTLLPVPLRERAV QCVGRLDQDTTGLLLLTDDGQFVHTITSPRHQVPKVYEITTAEPVTEAQIAQLYAGVL LADENENVAAAWAERVDTHHLRMALTQGKYHQVKRMVAAAGNHVDGLHRSAIGGLSLG DLAPGEWRWLEAADLEALNITPPHATVTSA" gene 660707..661279 /locus_tag="Rpic_0619" /db_xref="GeneID:6288479" CDS 660707..661279 /locus_tag="Rpic_0619" /note="PFAM: protein of unknown function DUF179; KEGG: rso:RSc0675 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898202.1" /db_xref="GI:187927715" /db_xref="InterPro:IPR003774" /db_xref="GeneID:6288479" /translation="MASPDALINLTNQFLIAMPGMADSTFSGTVVYMCEHNERGALGL VINRPIDIDLATLFDKIDLKLEIHPLAEQSVYYGGPVQTERGFVLHDATGAYSSSLAV PGGLEMTTSKDVLEAVAQGGGPHRFILTLGYAGWSAGQLEDEISRNGWLTVQADPEII FNVPPEERFAAALNLLGINPAMLSGEAGHA" gene 661272..661703 /locus_tag="Rpic_0620" /db_xref="GeneID:6288480" CDS 661272..661703 /locus_tag="Rpic_0620" /note="similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function" /codon_start=1 /transl_table=11 /product="Holliday junction resolvase-like protein" /protein_id="YP_001898203.1" /db_xref="GI:187927716" /db_xref="InterPro:IPR005227" /db_xref="InterPro:IPR006641" /db_xref="GeneID:6288480" /translation="MPEPARPATASVPVEGTLLAFDYGEKRIGVALGNTVSRSARALE TIPNRSVDFRFAQISRLVGEWQPVGFVVGMPVHPDGEEQPMIKLAKRFGNQLLGRYGL PVTWVDERYSSIAAQDAGASDDVLDAEAARIILQQFFDEHA" gene 661700..662218 /locus_tag="Rpic_0621" /db_xref="GeneID:6287397" CDS 661700..662218 /locus_tag="Rpic_0621" /note="regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity" /codon_start=1 /transl_table=11 /product="bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase" /protein_id="YP_001898204.1" /db_xref="GI:187927717" /db_xref="InterPro:IPR000836" /db_xref="InterPro:IPR002375" /db_xref="GeneID:6287397" /translation="MTSQQIDAEALYQSLVAQLRTRLADGHTWSVAGIVSGGAWIAKR LAHDLGLPEYGVVNVAMHRDDYAKKGLHAKAQPTTLPFDVNERRILLVDDVLASGRTI RAAINELFDYGRPAAVELAVLVDRGERQLPVAPDYIGERITLPADESLVLSEASEGAG ARFTFTREPKGA" gene 662289..663260 /gene="pyrB" /locus_tag="Rpic_0622" /db_xref="GeneID:6287398" CDS 662289..663260 /gene="pyrB" /locus_tag="Rpic_0622" /note="catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis" /codon_start=1 /transl_table=11 /product="aspartate carbamoyltransferase catalytic subunit" /protein_id="YP_001898205.1" /db_xref="GI:187927718" /db_xref="InterPro:IPR002082" /db_xref="InterPro:IPR006130" /db_xref="InterPro:IPR006131" /db_xref="InterPro:IPR006132" /db_xref="GeneID:6287398" /translation="MPKTFANPQLTKNGELKHLLSIEGLSRDILTDVLDTAQQFVSVS DSDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVINLNINASSTSKGES LLDTINNLSAMQADMFVVRHASSGAPYLIAEHVAPHVHVINAGDGRHAHPTQGLLDMF TIRHYKKDFSNLTVAIVGDILHSRVARSDIHALTTLGCAEVRAIGPRTLLPGGLEHMG VRVFHNMEEGLKGVDVVIMLRLQNERMSGALLPSAQEYFKAYGLTQDRLALAKPDAIV MHPGPMNRGVEIDSAVADGVQSVILNQVTFGIAVRMAVMGIVAGNND" gene 663269..664546 /locus_tag="Rpic_0623" /db_xref="GeneID:6287399" CDS 663269..664546 /locus_tag="Rpic_0623" /note="Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides" /codon_start=1 /transl_table=11 /product="dihydroorotase" /protein_id="YP_001898206.1" /db_xref="GI:187927719" /db_xref="InterPro:IPR004722" /db_xref="InterPro:IPR006680" /db_xref="InterPro:IPR013108" /db_xref="GeneID:6287399" /translation="MKLHIKGGRLIDPANGVDAQQDLYIAASKVVGVGHAPADFHANK TIDATGLVVCPGLIDLSARLREPGFEYKATLESEMAAAMAGGVTSLVCPPDTDPVLDE PGLVEMLKFRARNLNQAHVYPLGALTVGLKGAVLTEMAELTESGCVGFSQTDAPMADT QVLMRALQYAQTFGFTVWLRPEDPYLGKGGVAASGPLASRLGLSGVPVIAETVRLHTI FELIRSTGARVHLCRLSSAAGIELVRRAKAEGLPVTCDVNVHHISLTDIDIGYFNSQM RFVPPLRSGRDRDGIVRALADGTIDAICSDHTPVDDDEKLLPFAEATPGATGLETLLP LTLRWATEHKVELSKALARITSEPARVLGLRAGSLEVGAMADVCVFDPAATWKLEPRA LRSQGKNSPYLGFELAGRVRATMVAGHLAYDGH" gene 664533..665330 /locus_tag="Rpic_0624" /db_xref="GeneID:6287400" CDS 664533..665330 /locus_tag="Rpic_0624" /note="PFAM: phospholipid/glycerol acyltransferase; KEGG: rso:RSc0680 probable 1-acyl-sn-glycerol-3-phosphate acyltransferase transmembrane protein" /codon_start=1 /transl_table=11 /product="phospholipid/glycerol acyltransferase" /protein_id="YP_001898207.1" /db_xref="GI:187927720" /db_xref="InterPro:IPR002123" /db_xref="GeneID:6287400" /translation="MTGIDQRVASAPAEASSPQRKHVRRKLRLLVHLVEGLITCALLF WWIKPHTKQALIQRWSRKLLALFRVSLVVHGEPVTGKELAGSMLVSNHVSWIDIYAIN SWYPPRFVAKSEIRSWPVIGWLCAQTGVLFVERARKRDAHRIMHVIADAMRSGDAICV FPEGTTSDGLQLLPFHANLFQAPVSAGAPIRPLALRYRVAATGELTIIPAYIGDLSMM DTINAMLNGPPLVVEVFVGPAVAPEMDRRGLAAHSHDAVAALIDRAG" gene complement(665340..666188) /gene="apaH" /locus_tag="Rpic_0625" /db_xref="GeneID:6289033" CDS complement(665340..666188) /gene="apaH" /locus_tag="Rpic_0625" /EC_number="3.6.1.41" /note="hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP" /codon_start=1 /transl_table=11 /product="diadenosine tetraphosphatase" /protein_id="YP_001898208.1" /db_xref="GI:187927721" /db_xref="InterPro:IPR004617" /db_xref="GeneID:6289033" /translation="MNRESPHAIGDLQGCCSPLQTLLAALPANAPLRFVGDLINRGPD SLATLRQVISLCEAGRARTVLGNHDIHLLAVAAGVRKPGKRDTIAEILSAPDSDQLIT WLRHQPLAIFENSFLMVHAGVLPQWITGDVLELAGAVERELRSPHWKTFLADAFGNHP DKWSNDLVGMDRLRLTINALTRLRFCKPDGTMEFETTDADGAPDGHMPWFDVPGRRTR GTPIVFGHWSTRGLVMRDDVIGLDTGCVWGGKLTAAKLSLTPAGRDVIQVDCEQAQDP LAHKKK" gene complement(666241..667119) /locus_tag="Rpic_0626" /db_xref="GeneID:6289034" CDS complement(666241..667119) /locus_tag="Rpic_0626" /note="PFAM: lipopolysaccharide biosynthesis protein; KEGG: rso:RSc0690 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="lipopolysaccharide biosynthesis protein" /protein_id="YP_001898209.1" /db_xref="GI:187927722" /db_xref="InterPro:IPR003856" /db_xref="GeneID:6289034" /translation="MSSSTALDHDPLTLDEVFSFLKRHAVKLAVGTLACAALGIGLAY VLPAEWEATAIVQVGQVQAPSSPYHPTQGPVLLETPARTVERLKADAFTDTLLGNLGL PIKSGTSRRADLIRNSFNARVLRTSELVEIRVRDFSQQDAQRTLLAVQNQLIRAHAAL LQPTLDRYKSDYNLVSHHLADARQRLEQARKLTSVQKAANPGASTFAENVLLTSVLHE TEVEISKLQLQLSELNEQMSPTRTFNTRTFSDATVSQRPVFPRRSAFLLAGAIFGLVI TFAIALIRERQQTRAA" gene complement(667131..668222) /locus_tag="Rpic_0627" /db_xref="GeneID:6289035" CDS complement(667131..668222) /locus_tag="Rpic_0627" /note="PFAM: glycosyl transferase family 4; KEGG: rso:RSc0689 putative undecaprenyl phosphate N-acetylglucosaminyltransferase transmembrane protein" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 4" /protein_id="YP_001898210.1" /db_xref="GI:187927723" /db_xref="InterPro:IPR000715" /db_xref="GeneID:6289035" /translation="MLNFSTGFIISFIFTMLIVRYAHIHERFSADLDLTGAQKFHTRP VPRIGGVGIALAALGTGTLLWWHDAMQWRGFLMLVTAGTPAFLAGLVEDFTKSVSPRI RLIATMISALAAMWLLDARVVRIDIPWLDIVIAYLPVSIAITSLAVAGLANAVNIIDG FNGLASMVATMMFFSVSYVALQVGDTLVLSIALAMAGAILGFFIWNFPGGLIFLGDGG AYFIGFALAEAVVLLVTRNPSVSAWYPVLMLIYPIFETLFSIYRKKMLRGMSPGIPDG VHLHMLIYKRLMRWAVGSKSERHRLRRNSMTSPYLWLLSLLAVLPATLFWSKTWILAL FSAIFIVFYVWLYQSIVRFRAPRWLIFKK" gene complement(668283..669125) /locus_tag="Rpic_0628" /db_xref="GeneID:6289036" CDS complement(668283..669125) /locus_tag="Rpic_0628" /note="PFAM: glycosyl transferase family 2; KEGG: pmu:PM0512 lsg locus, lipopolysaccharide biosynthesis protein" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_001898211.1" /db_xref="GI:187927724" /db_xref="InterPro:IPR001173" /db_xref="GeneID:6289036" /translation="MMITANPRPFSVLMSLYARESPAALEVALASLTQQTLQPDETVI VLDGPVRKDHLDILQRYESALAMKIVPLDKNVGLARALAAGLEQCRHEWIARFDTDDW SHPERFARQHAFLDAHPTVGLLGSWIGEFEANPTLITRVRSVPLTHEAIVRYARRRNP FNHMTVMYQRSAVLAVGGYRDLPWMEDYWLWVRMLHAGVEAANQSDLLVHARAGLEMI GRRGGAAYVRSEWMAQRQFCLYGFISPLTAITNFLLRAIPRLLPTAIRNRLYAKALRT KIKA" gene complement(669138..670064) /locus_tag="Rpic_0629" /db_xref="GeneID:6288124" CDS complement(669138..670064) /locus_tag="Rpic_0629" /note="TIGRFAM: rhamnosyltransferase; PFAM: glycosyl transferase family 2; KEGG: noc:Noc_2177 rhamnosyltransferase" /codon_start=1 /transl_table=11 /product="rhamnosyltransferase" /protein_id="YP_001898212.1" /db_xref="GI:187927725" /db_xref="InterPro:IPR001173" /db_xref="InterPro:IPR006446" /db_xref="GeneID:6288124" /translation="MTTTTSILEPQVDLYAVVVTYSPDWPQTLALIEALEKQQALTIV VDNGSPEAMIAPLIEKSPPRTRWLRNESNEGIAAAQNRGIRDAMSRGATHIVLFDQDS SPAPDMLARLLSAEATLLAAGASVAAVGPQLIDETTGEKAPFITFENGHKRRAVTSPE SSQILCFSLLASGTLIRTEVLERIGLMKEELFIEYVDVEWGARARAAGLHCYGIGEAL LYHNLGDDRIQVLPNFFVPLHKPVRHYYTMRNAIYMQKLAYVPAYWKRSDLLRTVAGF IIFTLFNPPRLMQLRMMIKGIAHGFAGRYGPL" gene complement(670067..671374) /locus_tag="Rpic_0630" /db_xref="GeneID:6288125" CDS complement(670067..671374) /locus_tag="Rpic_0630" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898213.1" /db_xref="GI:187927726" /db_xref="GeneID:6288125" /translation="MMLIAVSILFALTGAFALRLAGFNYIGQQPHPLAFPIGMQIFLV TVPGTLAIGLFGIPLLYDLQNEIAQSTMRYGVISTMTSIGILLWMLAVAFRTRFFVHV QYRKTETDISTLRVLTIASAFILVIKLVSVSEIPLLLALKGDVQGAAEAKVRILTNQD GITVFGLNYIFRSFTSVVYLISVSLVAYDPHNRAKRVVLFWNLPLMILNAVYDVQKYT LVLLMLLTFWVLYTRTGRFRYIIIGALLGLALSLLMFVVTLGYDFDPTLLQSTMYRLF VGQMEGMFYIYEFLRPSPDYAWLGLPLAPLFGVPQLDPAAEVVKILFPNAGDTWLNAN TYYLAHAWTIFGPLSVLIGPVMVMLNLIVMLRLAQPLVRQAPQYYLPLLLWQLARLPL INIFTEFLYFKVALDFAVNLAFVWLVLQIAKRCTAYQSRLRSH" sig_peptide complement(670067..670129) /locus_tag="Rpic_0630" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.904) with cleavage site probability 0.383 at residue 21" gene complement(671371..672453) /locus_tag="Rpic_0631" /db_xref="GeneID:6288126" CDS complement(671371..672453) /locus_tag="Rpic_0631" /note="PFAM: acyltransferase 3; KEGG: mxa:MXAN_3238 acyltransferase family protein" /codon_start=1 /transl_table=11 /product="acyltransferase 3" /protein_id="YP_001898214.1" /db_xref="GI:187927727" /db_xref="InterPro:IPR002656" /db_xref="GeneID:6288126" /translation="MKHIPGIDGLRALAALSVIFFHLEVPGFAWGWTGVPLFFVISGF LITKILLSSRDRSNTLWSTYLREFYVRRSLRIFPLYYAYLAVACVLALISHYNIPNLW TFFAYLQNYPLGANSFASPWVLGHTWSLAVEEQFYLLWPLIIWWAGRRRLPWVIVMTV ALSISARIAISQWTGNPFLQFATLPSCADGLAMGAGLSLLYDEAQAQSRSGRLLIAAG ILLLAAVCLIGYEAMWTPTRWVRSPIGDWFFSIVCVFYSALLWYVLARPRRLLLMLEW APLRQLGKISYGLYLYHGLILILTDRVLGYRLATPSTALQVIRAVIVLGVTIGVAQLS FLFFESKFLRLKDALAASLPRKTESA" gene complement(672450..673391) /locus_tag="Rpic_0632" /db_xref="GeneID:6288127" CDS complement(672450..673391) /locus_tag="Rpic_0632" /note="PFAM: glycosyl transferase family 2; KEGG: xac:XAC1693 glycosyl transferase" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_001898215.1" /db_xref="GI:187927728" /db_xref="InterPro:IPR001173" /db_xref="GeneID:6288127" /translation="MSILQNHTAPLVSVLIPIFNHARFIEKCLDSLLSTGWAHLELIA IDDGSSDESLSIARTWAQRHESSFVRIDLSTQQNQGITRTLNRLIERARGDFLVFLAS DDLLLPDSIRARLLVLLNHPDALAIFADATAIDDDGRQIAKSVLRERFHADVAALSSD RRRALELILNWSVPGPVFMARRVAFDTVGKYDERFFIEDRDYYLRLLADQTLLYLDQP VAAYRMHGTSISGNKLRQIRIGQEIMRIEHKLLPAFTGSAKLALQLRIWSNTSAIYTS SIWCKPFTAVRCAMARLIATCMLLAVRADLIYWAPAK" gene complement(673388..674635) /locus_tag="Rpic_0633" /db_xref="GeneID:6289005" CDS complement(673388..674635) /locus_tag="Rpic_0633" /note="PFAM: polysaccharide biosynthesis protein; KEGG: gur:Gura_3189 polysaccharide biosynthesis protein" /codon_start=1 /transl_table=11 /product="polysaccharide biosynthesis protein" /protein_id="YP_001898216.1" /db_xref="GI:187927729" /db_xref="InterPro:IPR002797" /db_xref="GeneID:6289005" /translation="MNLVRTSLLNGIAVMVKTIAALVLNKVFAVTVGPAGYALIGQLQ NTVSIITNVGSGAINNGVVKYTAEYSSLESSQIAVWQTATRISAICSIAVGCAIALLA LPLSRLFLGAEDYALTFVLFGLLLPAFVLNALLLAILNGRKEIARFVATNIAGSLVTL ALTIGLTQWNGLRGALIALSINQSVALVATLIICWRTAWFTLPKLWGPFNREIARKLA HFAVMLITSAVAAPITQILIRSYLASVVGLEQAGLWQAAWKISDIYLMLLTTTLATYF LPRFAELTSPETIRRELLHAASILAPALAFGLTAVYLTRGWWIPLLFSASFDGMREVL PLQLLGDFFKMAGWLLGYLVLSKALSRLFVGAEILFSVSFYCLTLAFVPLFGLKGVVL AHTVNYIGYCVALWVGLKQARAL" gene complement(674632..675756) /locus_tag="Rpic_0634" /db_xref="GeneID:6289006" CDS complement(674632..675756) /locus_tag="Rpic_0634" /EC_number="2.6.1.50" /note="PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rfr:Rfer_1239 DegT/DnrJ/EryC1/StrS aminotransferase" /codon_start=1 /transl_table=11 /product="Glutamine--scyllo-inositol transaminase" /protein_id="YP_001898217.1" /db_xref="GI:187927730" /db_xref="InterPro:IPR000653" /db_xref="InterPro:IPR001597" /db_xref="GeneID:6289006" /translation="MIPFLDLKSINARQRAELISAFTEVLDAGWFIHGKQCEAFEADF AAYCEAKHCIGISNGLDALHLILRAMSIGKGDEVIVPSNTFIATWLAVTFAGATPVPV EPREDTCNLDPSLIAAAITPRTRAIIPVHLYGQPADMDPILEIAHQHGLKVIEDAAQS HGARYRGKRTGSLGDAAAFSFYPGKNLGALGDGGAVTTSDTALAQRIRMLSNYGSQKK YVHEAAGFNARLDEIQAAMLRAKLVLLDADNARRRSIADRYTRALIDCGLGLPILAND VESAWHIYAIHHPNRDALQRALSERGVGTVVHYPTPPHLQGAYRDLRLGEGAYPISER IHRETLSLPMSPVMTDVQVDEVIHTVRSVCGELAVDVTNL" gene complement(675801..676568) /locus_tag="Rpic_0635" /db_xref="GeneID:6289007" CDS complement(675801..676568) /locus_tag="Rpic_0635" /note="KEGG: dol:Dole_1288 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898218.1" /db_xref="GI:187927731" /db_xref="InterPro:IPR001451" /db_xref="GeneID:6289007" /translation="MIHPTAIVSPEARIGANVSIGPFSVIHSNVEIGEGTQIEGFCEI GHPSKLSDGQPLCIGKDSLIRSHSVFYEGSSFGERLVTGHRVTVREMTRCGVNFQLGT LSDIQGHCVIGDYVRTHSNVHIGQASRVGDFVWIFPYVVLTNDPHPPSNVLKGCVLED YAVVATMSVVLPAVTVGSHSLVAAHSLVSKNVTPHTVVGGSPAKMLCETSKIKLQDGT DRPAYPWTSHFHRGYPETVVANWIEAANALANTQCAR" gene complement(676565..676975) /locus_tag="Rpic_0636" /db_xref="GeneID:6289008" CDS complement(676565..676975) /locus_tag="Rpic_0636" /note="PFAM: WxcM domain protein domain protein; KEGG: sbn:Sbal195_3028 WxcM domain protein" /codon_start=1 /transl_table=11 /product="WxcM domain protein" /protein_id="YP_001898219.1" /db_xref="GI:187927732" /db_xref="InterPro:IPR008894" /db_xref="GeneID:6289008" /translation="MLTNTHLISFDVKGDERGSLIALEQGCNVPFPVARAYYIFDTAP GVRRGYHAHADLLQVAVCVKGACSFLLDDGQHQEVVRLDSPAKGLFIGPMIWREMFDF TPDCVLLVLANKIYDPEDYIRDHETFVSMTKERS" gene complement(676965..677885) /locus_tag="Rpic_0637" /db_xref="GeneID:6287065" CDS complement(676965..677885) /locus_tag="Rpic_0637" /EC_number="1.1.1.133" /note="PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bch:Bcen2424_0874 dTDP-4-dehydrorhamnose reductase" /codon_start=1 /transl_table=11 /product="dTDP-4-dehydrorhamnose reductase" /protein_id="YP_001898220.1" /db_xref="GI:187927733" /db_xref="InterPro:IPR001509" /db_xref="InterPro:IPR002225" /db_xref="InterPro:IPR003869" /db_xref="InterPro:IPR005913" /db_xref="InterPro:IPR013120" /db_xref="GeneID:6287065" /translation="MTIHSRPRIVVTGTTGQVGWELLRSLQGLGEIISVDRSVVDLSR LDAVRALIRSIEPSIIVNAAAYTAVDKAEQEPDPAFRLNADLPGVLAEECKRTQAAFI HYSTDYVFDGRKDGPYTEADATNPLNVYGASKLAGEHNALDANPATLVFRTSWVYGAR GKNFLTTIQRLAKERQQLRVVSDQIGAPTWSRSIADLTAHVIARGLGSTHAEPAWWTV HGGVYHLTSNGSTSWYGFAEAILQRSGITGVAVEPIPAMEYPTPAVRPGNSRLALNKL QSVFGLVPESWEQSLTKCLAPTSAERIHAY" gene complement(677882..678436) /locus_tag="Rpic_0638" /db_xref="GeneID:6287066" CDS complement(677882..678436) /locus_tag="Rpic_0638" /EC_number="5.1.3.13" /note="KEGG: rso:RSc0685 probable dTDP-4-dehydrorhamnose 3,5-epimerase protein; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related" /codon_start=1 /transl_table=11 /product="dTDP-4-dehydrorhamnose 3,5-epimerase" /protein_id="YP_001898221.1" /db_xref="GI:187927734" /db_xref="InterPro:IPR000888" /db_xref="GeneID:6287066" /translation="MNLSVTETTLPGVLILEPKVYGDSRGFFFESFNGREFETLTGVS TPFVQDNHSMSRKGVLRGMHYQIEHAQGKLVRVISGEVFDVAVDLRKSSSTFGKWAGV RLSAENKRQLWVPPGFAHGFLVLSETAEFLYKTTDYWYPEHERSVVWNDPTIAIDWPL AGAEPILAAKDAAAAAFTGAEVFA" gene complement(678433..679317) /locus_tag="Rpic_0639" /db_xref="GeneID:6287067" CDS complement(678433..679317) /locus_tag="Rpic_0639" /note="TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: bmu:Bmul_2597 glucose-1-phosphate thymidylyltransferase" /codon_start=1 /transl_table=11 /product="glucose-1-phosphate thymidylyltransferase" /protein_id="YP_001898222.1" /db_xref="GI:187927735" /db_xref="InterPro:IPR005835" /db_xref="InterPro:IPR005907" /db_xref="GeneID:6287067" /translation="MARKGIILAGGSGTRLYPITHSVSKQLLPVYDKPMIYYPLSTLM LAGIRDILIISTPQDTPRFSEMLGDGSQWGLNLQYAVQPSPDGLAQAFIIGKDFVGGD PSTLILGDNIFYGHDLVKQLNRASAQTSGASVFAYHVHDPERYGVVEFDSCMRAVSLE EKPAKPRSNYAVTGLYFYDADVCQIAAGVKPSARGELEITEVNQRYLERGTLEVEIMG RGYAWLDTGTHDSLIEAATFIATLQRRQGLMVACPEEIAFRQRWIDLEQVQKLAAPLA KSGYGAYLRQLIAEDVPR" gene complement(679332..680393) /locus_tag="Rpic_0640" /db_xref="GeneID:6287068" CDS complement(679332..680393) /locus_tag="Rpic_0640" /note="TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bmu:Bmul_2596 dTDP-glucose 4,6-dehydratase" /codon_start=1 /transl_table=11 /product="dTDP-glucose 4,6-dehydratase" /protein_id="YP_001898223.1" /db_xref="GI:187927736" /db_xref="InterPro:IPR001509" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002225" /db_xref="InterPro:IPR003869" /db_xref="InterPro:IPR005888" /db_xref="InterPro:IPR005913" /db_xref="InterPro:IPR013120" /db_xref="GeneID:6287068" /translation="MILITGGAGFIGANFVLDWLRGSDEPVVNVDKLTYAGNLKTLAS LEGDARHTFVRADICDRASMDELLTRHAPRAIVHFAAESHVDRSIHGPADFVQTNVFG TFTLLEAARAYWNRLEGAARANFRFHHVSTDEVYGSLGPDDAPFTETTPYAPNSPYSA SKAGSDHLVRAYFHTYGLPVLTTNCSNNYGPYHFPEKLIPLMIANALAGKPLPVYGDG LNVRDWLYVGDHCAAIRRVLEAGTVGEVYNVGGWNEKNNLEVVHTLCDLLDTLKPRAH GSYREQITFVRDRPGHDRRYAIDARKLERELNWKPAETFETGLRKTVEWYLENQEWVA DVMSGAYRDWVDVNYGSRR" gene 680570..681958 /locus_tag="Rpic_0641" /db_xref="GeneID:6286468" CDS 680570..681958 /locus_tag="Rpic_0641" /EC_number="5.4.2.8" /note="PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: rso:RSc0691 putative phosphomannomutase or phosphoglucomutase protein" /codon_start=1 /transl_table=11 /product="Phosphomannomutase" /protein_id="YP_001898224.1" /db_xref="GI:187927737" /db_xref="InterPro:IPR005841" /db_xref="InterPro:IPR005843" /db_xref="InterPro:IPR005844" /db_xref="InterPro:IPR005845" /db_xref="InterPro:IPR005846" /db_xref="InterPro:IPR016066" /db_xref="GeneID:6286468" /translation="MTQLNPTIFKAYDIRGIVEKTVDAETARLIGRAFGSAARAKGES AVVIGRDGRLSGPNLLAALADGLRASGVDVIDLGLVATPMVYFGTNIELAGRRATSGV MVTGSHNPPDYNGFKMVLAGQAIYGEQIQALRTRIEQGDFTEGAGDYVQVDIRQQYID RIISDVKVSRPMKIAVDCGNGVAGAFAPELFRAMGCEVTELFCEVDGHFPNHHPDPAH VENLQDLVRTLQTTDCELGLAFDGDGDRLGVVTKDGQVIFPDRQLMLFAQEVLSRNPG GEIIFDVKCTGKLAPFIREHGGKATMWKTGHSLVKAKLKETGAPLAGEMSGHIFFKDR WYGFDDGLYTGARLLEIVSRLADPSATLNALPNSHCTPELQLKCAEGESFELLDKIKA NATFTGAKEVNRIDGVRVEYEDGFGLARPSNTTPVVVMRFEADNDAAMARIQGEFRRV ILAEKPDAQLPF" gene 682002..683000 /locus_tag="Rpic_0642" /db_xref="GeneID:6286469" CDS 682002..683000 /locus_tag="Rpic_0642" /note="TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: rso:RSc0692 probable lipopolysaccharide heptosyltransferase protein" /codon_start=1 /transl_table=11 /product="lipopolysaccharide heptosyltransferase I" /protein_id="YP_001898225.1" /db_xref="GI:187927738" /db_xref="InterPro:IPR002201" /db_xref="InterPro:IPR011908" /db_xref="GeneID:6286469" /translation="MRVLIVKVSSLGDVVHCTPVVADILRAYPDAEIDWVVEEGFAGI VRIVRGVQGVIPFALRRWRKSLGSGRTWGEVAAFRRALRSKSYDAVLDTQGLIKTALV AAQAKLVPGGFVAGFGNRTEGAGYEPLAKLFYQRKVEMEPHIHVVERSRRMVAEALGY ALPDAIDFGLQPPADLPFNLPRPYVALVHATSRADKGWPLEAWVDVARALLARDYAIA LPWGSETERRTSESIREAIVAAVPGTVGRVVIPPRMSLPDVTAFLAHATAVVGVDTGL VHIAAALCKPTVALYNFTTSWRTGGYWTPNVHDLGSAEAHPTSAQALDALRALGVL" gene 683000..684316 /locus_tag="Rpic_0643" /db_xref="GeneID:6286470" CDS 683000..684316 /locus_tag="Rpic_0643" /note="catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A" /codon_start=1 /transl_table=11 /product="3-deoxy-D-manno-octulosonic-acid transferase" /protein_id="YP_001898226.1" /db_xref="GI:187927739" /db_xref="InterPro:IPR007507" /db_xref="GeneID:6286470" /translation="MLRVLYRWLWRIALPFALLRLWWRGRKEPGYRQHVGERLGFYPP RPNPDRPLLWVHAVSVGETRAAQPLIDALLARFPHHAVLLTHMTPTGRRTGAQFAAQR NRRVIQAYLPYDLPSAVDRFLRHFQPRLGLLMETEIWPVLIERAYTAGVPMVLVNGRL SARSHRRTARLGDAARQTYAQLAAVLAQTPDDADRYRSLGVPRVRVTGNLKFDITPHV DQIMAGRALHDALRGRSVWVAASTREGEEALLLDAWQAHRAQHVGRRHALLILVPRHP QRFDEVAQAAERAGLRVVRRSALSVSAAGVTESDQLADADVLLGDSMGEMALYYAAGE VAFIGGSLLPLGGQNLIEACAVGTPVVIGPHTFNFAQATRDAVAAGACEQVGDAAAAI RVIDAWLSDADAREAASRAALAFAATHGGATARTVEAVASLVLPTL" gene 684418..685098 /locus_tag="Rpic_0644" /db_xref="GeneID:6286471" CDS 684418..685098 /locus_tag="Rpic_0644" /note="PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: rso:RSc0694 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF306 Meta and HslJ" /protein_id="YP_001898227.1" /db_xref="GI:187927740" /db_xref="InterPro:IPR005184" /db_xref="GeneID:6286471" /translation="MSQPNRPKPSLLQTPRRVVLTAVALAAVTAATIIGAGCMTPTPS SSPAAAAPAAASASAAATKQTPANAAPNTGQASLAQAQGEGRSRFVLVRWQESGAAPK ELPSAEGDDTDPAAQPISIEFSGGLEAANGVVSGYSGCNRFSGPYEKLASGMRFGNLV STRMACDPARTELETAFLEALKSPLATVGMQPSASGTQGRQVIWKTTSGALLQFAERP LPPRGQTH" sig_peptide 684418..684570 /locus_tag="Rpic_0644" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.952 at residue 51" gene complement(685099..686565) /locus_tag="Rpic_0645" /db_xref="GeneID:6287420" CDS complement(685099..686565) /locus_tag="Rpic_0645" /note="TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: rso:RSc0695 probable porin (OMP) ABC transporter protein" /codon_start=1 /transl_table=11 /product="type I secretion outer membrane protein, TolC family" /protein_id="YP_001898228.1" /db_xref="GI:187927741" /db_xref="InterPro:IPR003423" /db_xref="InterPro:IPR010130" /db_xref="GeneID:6287420" /translation="MTVARSSRTRIAARGSLVVLCCSMMPMFAWAQTQPNTAAATDLL SAYRAALANDPQFASARAQSLAQREKLTQGRAGLLPQIGGAWSSTRIIFDQTAPAEFN KTFSSTGWTLSLSQPLFRWDRWETYKQGEIAAQAAEASLAQAQLDLITRTARAYFDVL NAQDTLQLATAQRDAIQQQYEQARRNFDVGNANITDANDAQARRDAIDASVIAARSDF EIKQSALKQIIGEPVGTLAGVRTGVTIPQPEPASAEPWVEQARSSNLQVALAQYNLQS AERDLKKATAGHLPSVDLVAQTGHTNASGNQYLPSLPGGARFDSSQIGVQVSIPIFAG GAIQSRVRENIALETKAANDLEFARRSAEQGARQAYIGVIAGLAQVKALEAAELSART AYDSNQLAYGVGVRIGTDVLNSQAQLFQARRDLARARYDTIVNGLRLKSAAGSLTEGD VIQVNTLLTANGSSDITALPPASTKLESAKPTGKSAKR" sig_peptide complement(685099..685194) /locus_tag="Rpic_0645" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 32" gene complement(686681..687013) /locus_tag="Rpic_0646" /db_xref="GeneID:6287421" CDS complement(686681..687013) /locus_tag="Rpic_0646" /note="PFAM: Rhodanese domain protein; KEGG: rso:RSc0696 hypothetical protein" /codon_start=1 /transl_table=11 /product="Rhodanese domain protein" /protein_id="YP_001898229.1" /db_xref="GI:187927742" /db_xref="InterPro:IPR001763" /db_xref="GeneID:6287421" /translation="MQQLAPTALAQWLADASRAKPVLLDVRWTEEVEICAIPGITHIP MDQIPGRASELNADQDIVCICHHGGRSAQVAQYLITQGGFDAARVYNLQGGVHAWAHQ VDPQMATY" gene complement(687036..687686) /locus_tag="Rpic_0647" /db_xref="GeneID:6287422" CDS complement(687036..687686) /locus_tag="Rpic_0647" /EC_number="2.1.1.77" /note="PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; methyltransferase small; Methyltransferase type 11; KEGG: rso:RSc0697 probable protein-L-isoaspartate O-methyltransferase" /codon_start=1 /transl_table=11 /product="Protein-L-isoaspartate(D-aspartate) O-methyltransferase" /protein_id="YP_001898230.1" /db_xref="GI:187927743" /db_xref="InterPro:IPR000682" /db_xref="InterPro:IPR007848" /db_xref="InterPro:IPR013216" /db_xref="GeneID:6287422" /translation="MDIEKSRFNMIEQQIRPWDVLDTDVLDLLSVVKREHYVPEAYRA LAFVDMEIPLAGGQNMLAPRVEARVLQELAVRKHEDVLEVGAGSGYMAALLAHRGRQV TTLDIVPELVAFARDNLSRNSVTNVDVVEASGAQGWGDGLYDVICVSGSVPAVPEALL KQLKVGGRLSIFVGGAPVMEAQLITRISNTEYQTRNLFETYVTPLVGVPAPSSFRF" gene complement(687782..688525) /locus_tag="Rpic_0648" /db_xref="GeneID:6287423" CDS complement(687782..688525) /locus_tag="Rpic_0648" /note="PFAM: regulatory protein TetR; KEGG: rso:RSc0698 putative transcription regulator protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family" /protein_id="YP_001898231.1" /db_xref="GI:187927744" /db_xref="InterPro:IPR001647" /db_xref="GeneID:6287423" /translation="MTDQDSESSSKRWTRRKEARPQELVAAALNLFVARGYAATRLED VASAAGVSKGTVYLYFANKEELFKAVVQENLVPALAEGEALIDSFDGTSEALLHEILM GWWELIGESPASGLTKLLMAESGNFPDLAQYYHEEVIERCDRLFARILERGMARGEFR DVNIDLTTLTMVAPMIFLMMWKHSFGPCSHRELEPKAFITHVVSLLLHGVLRNPATGA VIPPPPALTVQPWRTLPERANNPDEGASS" gene 688707..688964 /locus_tag="Rpic_0649" /db_xref="GeneID:6288762" CDS 688707..688964 /locus_tag="Rpic_0649" /note="PFAM: protein of unknown function UPF0153; KEGG: azo:azo0713 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function UPF0153" /protein_id="YP_001898232.1" /db_xref="GI:187927745" /db_xref="InterPro:IPR005358" /db_xref="GeneID:6288762" /translation="MDCRPHCGACCIAPSISSPIPGMPNGKPAGVRCAQLDEANGCRI FGQPERPAVCSSLQPEPDMCGGSATHAMQFLTRLEIATAAH" gene 688971..689564 /locus_tag="Rpic_0650" /db_xref="GeneID:6288763" CDS 688971..689564 /locus_tag="Rpic_0650" /note="KEGG: rso:RSc0700 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001898233.1" /db_xref="GI:187927746" /db_xref="GeneID:6288763" /translation="MTDSTKPAVRSNRVRWWSGAAAVAVAIVVTLVACMPTGWTGDGY TFSRGQMQDALARKFPFQRRFLGFFDVTLSNPQVSLDPARNRIAIQADAVVESGLFRQ PLTGPLAVSSGLHYDPPTHSIRLNQPSVDRFDLQNVPGGIGPQISSIGSLIAGQLLND YAVYTFKPEQLKVAGIAVEPGTITVLPEGVHVQAKRP" sig_peptide 688971..689072 /locus_tag="Rpic_0650" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.896) with cleavage site probability 0.692 at residue 34" gene 689617..690498 /locus_tag="Rpic_0651" /db_xref="GeneID:6288764" CDS 689617..690498 /locus_tag="Rpic_0651" /EC_number="3.6.1.27" /note="BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell" /codon_start=1 /transl_table=11 /product="undecaprenyl pyrophosphate phosphatase" /protein_id="YP_001898234.1" /db_xref="GI:187927747" /db_xref="InterPro:IPR003824" /db_xref="GeneID:6288764" /translation="MDIALAIKALILGIVEGLTEFLPISSTGHLILAGQLLDFNDEKG KIFEIVIQFGAILAVCWEFRHKIIDVIKGLPNDPRQQRFAINVIVATIPAITLALIFG KAIKAHLFNPIVVASAFILGGFVILWAEWRERHRGETHDPRANALLEAAKAGAPRIET LDDLRISDAIKVGFAQCFALIPGTSRSGSTIIGGLLFGLSRKVATEFSFFLAIPVIFG ATVYELYKSRALLSADDLSIFAVGFVAAFISAFFCVRWLLKFIATHDFRGFAWYRIIF GIIVLATAYTHLIAWQA" gene 690618..691730 /locus_tag="Rpic_0652" /db_xref="GeneID:6288765" CDS 690618..691730 /locus_tag="Rpic_0652" /note="PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rso:RSc0702 putative NADH-dependent flavin oxidoreductase oxidoreductase protein" /codon_start=1 /transl_table=11 /product="NADH:flavin oxidoreductase/NADH oxidase" /protein_id="YP_001898235.1" /db_xref="GI:187927748" /db_xref="InterPro:IPR001155" /db_xref="InterPro:IPR003733" /db_xref="GeneID:6288765" /translation="MSALFQPFSLRGLTLENRIVISPMCQYSADNGQATAWHHTHLGS LSLSGAGLLMIEATAVSPEGRITNGCLGLWDDATEAALERTLAAIRQNALVPIGMQIA HAGRKASSARPWEGGALLALDAGGWETMGPSPLPQRPEERAPREMTDADLARVRDQFV DTARRAVRLGLSAIELHAAHGYLLHEFLSPIANQRTDAYGGSRENRMRYPLEIFDAVR AVVPDNIPVGVRVSATDWVEGGWAPEDSVVFAQALRARGCDWIDASSGGVSPLQQIPL STGYQVPFAEKIRNEADIPTIAVGLINEAHEAEAIVAQGRADLVAVGRAFLYNPHWAW AAAAELGATVTAPPQYWRAFPRHAKNLFGDTHFGAR" gene complement(691756..692529) /gene="trmB" /locus_tag="Rpic_0653" /db_xref="GeneID:6288040" CDS complement(691756..692529) /gene="trmB" /locus_tag="Rpic_0653" /EC_number="2.1.1.33" /note="tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine" /codon_start=1 /transl_table=11 /product="tRNA (guanine-N(7)-)-methyltransferase" /protein_id="YP_001898236.1" /db_xref="GI:187927749" /db_xref="InterPro:IPR003358" /db_xref="InterPro:IPR004395" /db_xref="GeneID:6288040" /translation="MQPIEQPGTGPDDITPESQDTNTAESAESGAETGHPRRIRSFVR RAGRTSTGQQRAINELGPRFQLPYTTEPLDWDAAFGRAGAKRIFEIGFGMGETTAHIA QLRPDDDFLGVEVHEPGVGALLKLIGEREIGNIRIVSHDAVEVLAQMIPEGTLDGIHV FFPDPWHKKRHNKRRLIQSPFVARLAAHLKPGGYLHCATDWEEYAHQMLEVLSSEPTL ENTADGFAPRPDYRPVTKFEKRGLRLGHGVWDVVFRKRG" gene complement(692616..692689) /locus_tag="Rpic_R0003" /note="tRNA-Gly4" /db_xref="GeneID:6288041" tRNA complement(692616..692689) /locus_tag="Rpic_R0003" /product="tRNA-Gly" /db_xref="GeneID:6288041" gene complement(692748..693461) /locus_tag="Rpic_0654" /db_xref="GeneID:6288042" CDS complement(692748..693461) /locus_tag="Rpic_0654" /note="KEGG: rso:RSc0707 probable protein with proline-alanine-aspartic repeated motif" /codon_start=1 /transl_table=11 /product="putative protein with proline-alanine-aspartic repeated motif" /protein_id="YP_001898237.1" /db_xref="GI:187927750" /db_xref="GeneID:6288042" /translation="MLATTNVLIKTEDGREALAQRRHDMQMRQRHLLILIDGARTVGQ LHQLLSDWPDFDELLLGLQRAGMVDVLPGISHDNAPAAEPFDPITHFNRPLLDDDAHG APAALSLIYDKLPPLTGMTLGLQAVAAPIDEPAANDANRPRAAPVQASATPQPAVPPE LADVLPNVVKVELMRLAVQHFGSAAGAAMPLLRACKEDPQSLCDVVAACAKAAAPTAG EQAAAKFVDAAMQAMALRR" gene complement(693591..695645) /locus_tag="Rpic_0655" /db_xref="GeneID:6286769" CDS complement(693591..695645) /locus_tag="Rpic_0655" /note="AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase" /codon_start=1 /transl_table=11 /product="acetoacetyl-CoA synthetase" /protein_id="YP_001898238.1" /db_xref="GI:187927751" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR005914" /db_xref="GeneID:6286769" /translation="MSTIQEGALLWTPSADFIARSRLTHYLDWLARERGLRFSATTPE GYARLWEWSTTELEAFWTSVWDYLDLRASTPFSQMLGDRTMPGAQWLVGAKLNYVDQV MRHVEEGGSPDRTAIRYASETKPLADLSWRELRQRVASLADALRKMGVVPGDRVAAYL SNTPDAIVAFLATASVGAIWSVCAPDMGQVAVTDRFRQIEPKVLIALDGYHYGGRAFD RTDIVAEMVAALPTVEHLVLVPQLLGEVNRARFPEARDWCDLTANDVPLVVTPVAADH PLWILYSSGTTGMPKPIVHGHGGLLLVQTMMGALHLDLGPDDVYHWYSSTGWVMWNSQ ASGLLGGVTLAIYDGNPGTPDLNTLWRFAQDAGVTFFGAGAAFFANCLKAGIEPGRDF DLSRLRAVGSTGSPLSAEAYDWIYRHVKADVWLNPISGGTDFAGCFVGGVATLPVYAG EMQCRNLGSRVEALDEAGRPLIDAVGELVCTAPIPSMPLFFWGDSDGSRYRDSYFDMY PGQWRHGDWIKITPRGGAIIYGRSDATINRHGIRMGTAELYRVVEDLPEVLDSLVVDL EFLGRESFMPLFVVLREGATLDDTLRSTINARIKAGLSARHVPNVVVQAPGVPRTLSG KKMEVPIKKLLLGAPIERVANPDAMANPEVLAWYATYAGSLARQSSAHGEPAPALESW RS" gene complement(695726..697237) /locus_tag="Rpic_0656" /db_xref="GeneID:6286770" CDS complement(695726..697237) /locus_tag="Rpic_0656" /note="TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: mms:mma_2905 succinate-semialdehyde dehydrogenase (NADP+)" /codon_start=1 /transl_table=11 /product="succinic semialdehyde dehydrogenase" /protein_id="YP_001898239.1" /db_xref="GI:187927752" /db_xref="InterPro:IPR010102" /db_xref="InterPro:IPR015590" /db_xref="InterPro:IPR016160" /db_xref="GeneID:6286770" /translation="MAEALDSSRTAANALERITDRTLVKTQSYVDGAWVGAADGATFP VYDPATNAHLTDVANLGHAETLRAIDAANAAWPAWRELTGKERAGLMRRWFDLLIANA DDLATLMTAEQGKPLAEAKGEIVYGASFIEWFAEEAKRVSGDVMASTWRDKRMVVLKQ PVGVCASITPWNFPLAMITRKVAPAMAAGCTIVIKPAEQTPLSALAMAELAHRAGIPK GVVNVVTGDADRSIAIGKALCESPIVRHLSFTGSTPVGRILMQQCSPTVKKVALELGG HAPFIVFDDADIDAAVEGAVQSKYRNAGQTCVCTNRFYVHASVYDAFVEKLSAKVRGI KVGNGFESGVVQGPLIDDQAVEKVQRHIDDATQKGARLTAGGKLMQGFGSQRFVEPTV LADATPDMLIAREETFGPVSAIFKFQDEAEVVRLANDTEFGLASYFYSRDIGRIWRVA EQLEYGMVGINTGLISNEVAPFGGIKQSGLGREGSVYGIDEYLELKYLCMGGI" gene complement(697367..698878) /locus_tag="Rpic_0657" /db_xref="GeneID:6286771" CDS complement(697367..698878) /locus_tag="Rpic_0657" /note="TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: rso:RSc0708 hypothetical protein" /codon_start=1 /transl_table=11 /product="UbiD family decarboxylase" /protein_id="YP_001898240.1" /db_xref="GI:187927753" /db_xref="InterPro:IPR002830" /db_xref="GeneID:6286771" /translation="MQYRDLRDFLAQLERTGELRRVHQPVSPRLEMTEVCDRLLRSEG PAVVFAQPVDGAQKYDMPVLANLFGTTRRVALGMGAESLDELRDIGRLLSALKEPEPP RGLREAGKLWTMAKAVWDMAPRKVSSPACQEIVWEGNDVDLSRIPVQTCWPGDAAPLV TWGLVITRGPHKKRQNLGIYRQQVINRNQVIMRWLAHRGGALDFREHAIANPGQPFPI AVALGADPATILGAVTPVPDTLSEYQFAGLLRGSRTELATCLTPSLAQAQLQVPAGAE IILEGHIQPDPTHPSGYQHALEGPFGDHTGYYNEQDWFPVFTVERITMRRDPIYHSTY TGKPPDEPAVLGVALNEVFVPLLQKQFPEIADFYLPPEGCSYRMALVSMKKQYAGHAK RVMFGVWSFLRQFMYTKFIVVVDDDVNLRDWKEVIWAITTRVDPARDTVMVENTPIDY LDFASPVSGLGSKMGIDATNKWPGETTREWGQPIVMDTAVKAKVDAMWDTLFQ" gene 699416..700603 /locus_tag="Rpic_0658" /db_xref="GeneID:6286772" CDS 699416..700603 /locus_tag="Rpic_0658" /note="PFAM: Lytic transglycosylase catalytic; KEGG: rso:RSc0709 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="Lytic transglycosylase catalytic" /protein_id="YP_001898241.1" /db_xref="GI:187927754" /db_xref="InterPro:IPR008258" /db_xref="GeneID:6286772" /translation="MNGWKTLHSSGIGSALQRRLVAPVGRRLARAGQVALPRKLRMEL NAGGAAASRNELHPGVLLVFRSGHVVLNSIGLLAVAAAVALSLNSEWRATVAQRVLHF TPGVDTSVASANPSPAIAAGVQPVAFAPTAPSAGTGAAQAVAPAAAQGGTVAAAGWDT LSKVPSVAELAAQIPNTQVVRDARESATAGTPREQAAVAEYIARKYRVAATATGQLVK AAYQTGKEVGLDPLLILGVMAIESSFNPFAESGMGAQGLMQVMTKVHQDKYEVMGGVG AALNPYANIKVGALVLKDCIARAGSIEGGLKLYVGAVTQGDGGYGGKVLQERSRLRMV ATGHRSPMTVASEREPVKPVATATPVTQADAKTQATKPSDKQPAAGQQEEARLDNKSQ GQA" gene complement(700683..701867) /locus_tag="Rpic_0659" /db_xref="GeneID:6288299" CDS complement(700683..701867) /locus_tag="Rpic_0659" /note="PFAM: aminotransferase class I and II; KEGG: rso:RSc0710 aminotransferase" /codon_start=1 /transl_table=11 /product="aminotransferase" /protein_id="YP_001898242.1" /db_xref="GI:187927755" /db_xref="InterPro:IPR001176" /db_xref="InterPro:IPR004838" /db_xref="InterPro:IPR004839" /db_xref="GeneID:6288299" /translation="MDAHRLNTAARLANIRAFHVMELAKQARELELAGRSIIHMGIGE PDFTAAEPVVQAAADAMRRGVTQYTGALGIRSLRQAIARYYHTVYGLDIAPERIIVTA GASAALLLACAVLVEIGGEVLMPDPSYPCNRHFVAAFNGEAKLVPSGPEERFQLTAAQ VETHWGERTQGVLLASPSNPTGTSILPDELQRIVQAVRARGGFSIVDEIYQGLSYDQA PVSALSFGDDVVTINSFSKYFNMTGWRLGWLVAPAELVPEFEKVAQNLFICASAVAQY AALACFAPEALAIYEERKAEFRRRRDFIVPALESLGFKVPVKPDGAFYVYADCRGVNH PHAANADALTQSMLHDAGVVLVPGLDFGPHTAQHYIRLSYATSMAHLEEAVARLGKLF SR" gene complement(701912..702379) /gene="nusB" /locus_tag="Rpic_0660" /db_xref="GeneID:6288300" CDS complement(701912..702379) /gene="nusB" /locus_tag="Rpic_0660" /note="Regulates rRNA biosynthesis by transcriptional antitermination" /codon_start=1 /transl_table=11 /product="transcription antitermination protein NusB" /protein_id="YP_001898243.1" /db_xref="GI:187927756" /db_xref="InterPro:IPR006027" /db_xref="InterPro:IPR011605" /db_xref="GeneID:6288300" /translation="MTQDNSQAKAKAPAKSARRRARELALQGLYQWLLNRNDPGVVEA HLQDAQGFNKADRAHFDALLHGAIREETTLTEAFTPYLDRPVAELSPVERAALLVGAY ELVHCVDIPYKVVINEAVELTKTFGGVEGYKYVNGVLDKLATQVRAVEVAARR" gene complement(702407..702907) /gene="ribH" /locus_tag="Rpic_0661" /db_xref="GeneID:6288301" CDS complement(702407..702907) /gene="ribH" /locus_tag="Rpic_0661" /EC_number="2.5.1.9" /note="RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not" /codon_start=1 /transl_table=11 /product="6,7-dimethyl-8-ribityllumazine synthase" /protein_id="YP_001898244.1" /db_xref="GI:187927757" /db_xref="InterPro:IPR002180" /db_xref="GeneID:6288301" /translation="MDHGFYPTNLNGEGLRIGIVQARFNEPVCEALREACVAELEQLG VAGEDVLLVTVPGALEVPLALQKMAESGQFDALIALGAVIRGETYHFELVSNESGAGI TRVGLDFNIAIANGILTTDTDAQAHARTREKGRDCARTAVEMANLTNDLDGLQDHGQD DDGENE" gene complement(702989..704128) /locus_tag="Rpic_0662" /db_xref="GeneID:6288302" CDS complement(702989..704128) /locus_tag="Rpic_0662" /note="bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis" /codon_start=1 /transl_table=11 /product="bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein" /protein_id="YP_001898245.1" /db_xref="GI:187927758" /db_xref="InterPro:IPR000422" /db_xref="InterPro:IPR000926" /db_xref="GeneID:6288302" /translation="MSIATVEEIIAEIRAGRMVILVDEEDRENEGDLILASDFVTPEA INFMVTHARGLVCLTLTEEHCDQLDLPMMASRNGTQFGTNFTVSIEAAEGVTTGISAA DRARTIQVAAAKNAKPSDLVNPGHIFPLRAQKGGVLMRAGHTEAGCDLTAMAGLTPAA VICEILKDDGTMARLPDLVEFAKKHGLKIGTIADMIQYRSRTESIVERVGERTMETQF GTFHAVAFRDRAAGRAHLALVKGTPTPDTETLVRVHEPLSVLDLLECQRTTHSWSVPA ALRAIQAAPTGVVVLLNCGDSADRLFTQFSALDAPHERPRTKPDPRIYGIGAQILKDV GVGKMRVLASPLKLPSMVGYDLEVTAYQSMADAPDVTSSASTATH" gene complement(704256..704909) /locus_tag="Rpic_0663" /db_xref="GeneID:6288739" CDS complement(704256..704909) /locus_tag="Rpic_0663" /note="catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine" /codon_start=1 /transl_table=11 /product="riboflavin synthase subunit alpha" /protein_id="YP_001898246.1" /db_xref="GI:187927759" /db_xref="InterPro:IPR001783" /db_xref="GeneID:6288739" /translation="MFTGIVAAVGRIETVSPLGDNADAGVRLSIDAGGLPLADVALGD SIAIQGACMTVVAKTETRFDVDVSRESLSKTVGLERPGEVNLEKALRLADHIGGHLVS GHVDGLGTVTYFAPVNESHELRVRAPVELGKYLAYKGSVVVNGVSLTVNSVRDDADGC EFSINLIPHTVAVTTLKHLKAGSQVNLEIDLIARYVERMLTHAAIGLPVGTQPLAAV" gene complement(704916..706028) /locus_tag="Rpic_0664" /db_xref="GeneID:6288740" CDS complement(704916..706028) /locus_tag="Rpic_0664" /EC_number="3.5.4.26" /EC_number="1.1.1.193" /note="KEGG: rso:RSc0715 probable riboflavin biosynthesis bifunctional RibD : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase oxidoreductase protein; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein" /codon_start=1 /transl_table=11 /product="riboflavin biosynthesis protein RibD" /protein_id="YP_001898247.1" /db_xref="GI:187927760" /db_xref="InterPro:IPR002125" /db_xref="InterPro:IPR002734" /db_xref="InterPro:IPR004794" /db_xref="InterPro:IPR011549" /db_xref="InterPro:IPR016192" /db_xref="GeneID:6288740" /translation="MFSDFDHAMMQRALALAEKGLFTTTPNPRVGCVIVRDDTVIGEG YTQPAGQDHAEIQAIKDAQSRGQDVRGATAYVTLEPCSHFGRTPPCADRLVEAGITRV VAAMEDPNPAVSGRGLQKLRDAGVDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVG ASLDGRTALDNGISQWITETEARNDGHRWRARACAILTGIGTVREDNPRLTVRAINTP RQPRRVLIDSALDVPLDAHILTADGHHEPTLIFAAQPEAGRMRALSERGAEVILLPNA AGKVDLAAVLRELGRREINELHVEAGFKLNGSLLREGLVDEILVYLAPKVLGSGQGMF NMGPLQTLEGAAEFFFHDISRIGGDLRILARRNPTD" gene complement(706053..706625) /locus_tag="Rpic_0665" /db_xref="GeneID:6288741" CDS complement(706053..706625) /locus_tag="Rpic_0665" /note="KEGG: rso:RSc0716 putative type 4 fimbrial pilin related transmembrane protein" /codon_start=1 /transl_table=11 /product="putative type 4 fimbrial pilin related transmembrane protein" /protein_id="YP_001898248.1" /db_xref="GI:187927761" /db_xref="InterPro:IPR012902" /db_xref="GeneID:6288741" /translation="MNASRLRAGFTLAELVVVLSVISILAMFAAPAALNWWQRETVVV LADRFVSAISLAQTMSRNQRAWVHLGPCNAEQGWSSGWALYMMPSPQTQATPLEPGTE DILMRVSPPVVPPVEFAFTASQRDVDTLSFAPVGYSRQRNGSQLYGTLTIRSGAHERR VRISSAGRARICDPAKDTKTCGASASANDD" sig_peptide complement(706053..706160) /locus_tag="Rpic_0665" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.769) with cleavage site probability 0.436 at residue 36" gene complement(706622..707026) /locus_tag="Rpic_0666" /db_xref="GeneID:6288742" CDS complement(706622..707026) /locus_tag="Rpic_0666" /note="KEGG: rso:RSc0717 putative type-4 frimbrial pilin-related signal peptide protein" /codon_start=1 /transl_table=11 /product="putative type-4 frimbrial pilin-related signal peptide protein" /protein_id="YP_001898249.1" /db_xref="GI:187927762" /db_xref="InterPro:IPR012902" /db_xref="GeneID:6288742" /translation="MKYRHAAFTLVELTIALAIAALLTGAAIQTWSRHHERARRTAAH AALVSTMVELERQYAHTGNSSSPANIPEYISGYHLLAGPCDGRAAAHCIEVVAQPVHA GTDCGALILRNTGERFTQIGNARQPASPACWP" sig_peptide complement(706622..706702) /locus_tag="Rpic_0666" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.781) with cleavage site probability 0.426 at residue 27" gene complement(707023..707814) /locus_tag="Rpic_0667" /db_xref="GeneID:6286498" CDS complement(707023..707814) /locus_tag="Rpic_0667" /note="KEGG: rso:RSc0719 probable signal peptide protein" /codon_start=1 /transl_table=11 /product="Tfp pilus assembly protein PilX-like protein" /protein_id="YP_001898250.1" /db_xref="GI:187927763" /db_xref="GeneID:6286498" /translation="MLSDSAKAGGFSMMVVMPAMALLGLLTMATFHLVLDQRHRTSLT ADRALAKYGAEMALNAAECELSVATETPTNLQCMAALPRERIAALDPVLRRGFLLGTC GNDGSLGLCQPQPDQSLWTLARLLDATTHAVEIDARLPGTQRIAGRTARYVIEPIPDR WPGQTQHSDDTPPPWLYRITAAGFGADPAVSVVLQTVFRPRVPRHTSTPQTTTEAALP TIRPSGTVTQRVYTTSDRHDATAPHSQTFMLGPLNWRELIEEGLR" sig_peptide complement(707023..707088) /locus_tag="Rpic_0667" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.627) with cleavage site probability 0.379 at residue 22" gene complement(707808..708740) /locus_tag="Rpic_0668" /db_xref="GeneID:6286499" CDS complement(707808..708740) /locus_tag="Rpic_0668" /note="KEGG: rso:RSc0720 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001898251.1" /db_xref="GI:187927764" /db_xref="InterPro:IPR012902" /db_xref="GeneID:6286499" /translation="MCRLSHARRGATLVELLIGTLVGLIVLGIALQLALLARASYQRV ADNALIESRGTQALELLTMALQHAGWATDTPAASPERRWPDAKATLSIQGADSCTPSE AEVLGCNGSGIRNSDAVLVRFAGRSMHTNSQRADDSIIDCSGYGVAEPVQNGSDGQRA GYMLLYLARATDQEPQLMCRSRRHQAGQTVAGRWTSNGMVRGVETMQLLYEVRTAGGT SSTTLSARSLTTEQWRRVQAVHIALVVRGDYNTPRSATKTTATLALFPDLQRVEGANA QDLEFTPTETQRRRAVFTATVRLRNPLACDVDVC" gene complement(708742..708942) /locus_tag="Rpic_0669" /db_xref="GeneID:6286500" CDS complement(708742..708942) /locus_tag="Rpic_0669" /note="KEGG: rso:RSc0721 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001898252.1" /db_xref="GI:187927765" /db_xref="InterPro:IPR012902" /db_xref="GeneID:6286500" /translation="MPVCHHVKRQHGAILLESLVALAVLSLCAAGTLTALERMETASQ SLRQLSTDVRTQNNGVESANVH" gene 709385..710029 /locus_tag="Rpic_0670" /db_xref="GeneID:6286501" CDS 709385..710029 /locus_tag="Rpic_0670" /note="KEGG: xft:PD1615 hypothetical protein" /codon_start=1 /transl_table=11 /product="Tfp pilus assembly protein FimT-like protein" /protein_id="YP_001898253.1" /db_xref="GI:187927766" /db_xref="InterPro:IPR002048" /db_xref="InterPro:IPR012902" /db_xref="GeneID:6286501" /translation="MRALVRGSLFALWFRKVVQAHPSLVSARLRYSRALQGQSGGSPI VTTLLATRGFTLTELMVVLAILAILLVVAIPSFAPMLRSNRVFAVQTEVMSSLALARS EAAKRGIPVSVVLSGASGVVGNEWGAGWSVWVDLNANGVVDSGEVLRAHDALPPGFTL SVPNNGALKFDAHGFLSPAVLRQLKVCSTASGTSGYQITIQPNGLVDAASATCP" gene 710026..710529 /locus_tag="Rpic_0671" /db_xref="GeneID:6287376" CDS 710026..710529 /locus_tag="Rpic_0671" /note="TIGRFAM: type IV pilus modification protein PilV; KEGG: lpc:LPC_2663 type IV fimbrial biogenesis protein PilV" /codon_start=1 /transl_table=11 /product="type IV pilus modification protein PilV" /protein_id="YP_001898254.1" /db_xref="GI:187927767" /db_xref="InterPro:IPR013362" /db_xref="GeneID:6287376" /translation="MNARPLNSTARGYALLEALIALLVISVGLIGFSRLQLIGMSSSN ISTQRSKAVYLAYEISDRIRANLTGYSAGAYSSLSGAASNPNCVSNSAGCSAAQIAQN DYYEWSNELSTQLPQGAGVVCLTSKISPTATPTAPGCDGGGNVYAVMVWWTENGQQQM LSQSFKP" gene 710526..711560 /locus_tag="Rpic_0672" /db_xref="GeneID:6287377" CDS 710526..711560 /locus_tag="Rpic_0672" /note="KEGG: noc:Noc_2272 type IV pilus assembly protein PilW" /codon_start=1 /transl_table=11 /product="type IV pilus assembly protein PilW" /protein_id="YP_001898255.1" /db_xref="GI:187927768" /db_xref="InterPro:IPR001120" /db_xref="InterPro:IPR012902" /db_xref="GeneID:6287377" /translation="MMNRRQTGLSLVELMVGLTLGLLLVGIAVSIYLSGRQTSRVVDT VGRLEESARFAVEAIEQDIRMTGFRGCNGMANSPVNTLNSPGSFNNRFDQTLFGYHGS GSTWTPALDTSISSLPQPPIAGTDVIAIKRTYDNGAALTAQMTGTTGAVTVEASAPFA QGDYILVSDCEAQAVFQATQVTSSPTTGSLSHAAVAVPTPGNASADLTHVFNTDASAY RVVTKTYFVAQSARNKAVNSLWSYSVPDYTGAGQPQELVEGVDNLVLLYGEDTDNDQA ANRYVTADNVGTWNNVVSVRIQLLMASVQNSVSPIAQTYTFNGASATAADRRIRSVFT SVITLRNRVM" gene 711560..712129 /locus_tag="Rpic_0673" /db_xref="GeneID:6287378" CDS 711560..712129 /locus_tag="Rpic_0673" /note="KEGG: hch:HCH_05928 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898256.1" /db_xref="GI:187927769" /db_xref="GeneID:6287378" /translation="MLLLNLNRLRVAQGGVALPVALVFLVLLTLLGLALVNGSVMQEM MLGNSKDSKLAFQAAEAALRDAELDVAQNITTTTAFVQACTNGLCTPPSSWSTPKSAS VSSLIDWTNGANTRTYGAYTGAVALPNVASQPLYVIEKLSGLSVPAGESIGIGVKPPA GGTAYRITVYSTGARPETHVVLESIYVKR" sig_peptide 711560..711676 /locus_tag="Rpic_0673" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.683) with cleavage site probability 0.201 at residue 39" gene 712134..715502 /locus_tag="Rpic_0674" /db_xref="GeneID:6287379" CDS 712134..715502 /locus_tag="Rpic_0674" /note="KEGG: noc:Noc_2274 fimbrial assembly protein" /codon_start=1 /transl_table=11 /product="Tfp pilus assembly protein tip-associated adhesin PilY1-like protein" /protein_id="YP_001898257.1" /db_xref="GI:187927770" /db_xref="InterPro:IPR002035" /db_xref="InterPro:IPR002048" /db_xref="GeneID:6287379" /translation="MKTQSFLVKALALLISSLLPLTTNAALLTIAQYPLFLSSNTATP NILVVYDNSQSMDGTMTGKLIAGNDPTTRGNIARSVITSTISNYRTQFNWGLATFDAP GPSLYNTYAYFFGSASTMVFTNDCVNGISASNGGLRCVPNPQSGASYSYLTYELSGDD PAINDVLYYNGTWPYPWAIGLSGGTTSNPNTNYNGCQNHANVSTWNSGDFSGCQQVGF TPTDAGFLPGNPPYSRMIWLSRAWGYYANISGSGKMLEAVQADSPSHYQNLIDYLAPE TNSNSAASGHSKLEIKNGAVATPLSGSLQTARSYFAGSQTGYSTPVTQSCQKNFVLLA TDGNPTGKTDGSMWALSDQQSTYNSSTGQWTFSNAANDVFSQITALRSTSVKGYTSPF DIQTYVVGMGSTVSNPASVAALNQMAKLGGTGNAYLSTDPATLQQQFQSIAADITTKV AAASAVSLNAGSWGTGTALYQAKFSSADWSGQLLAYAINSDGSIGSQLWDAGQQINSQ NWDTGRQILTYKPSAALGARGIPFRWPVSPGSPKATEMDAAQSTKLNYNASQTTNDGY GSQRVTYLRGNNANEANTCGSCTPSFRNRPTSKLGDIIHSSPNYVGAPAFNYPDNMES APYSAFVSTWRNRTPMIYVGANDGMLHGINASTGKESMAYVPAAIYSNLSMLTAPTYT HQYFADGSVTVGDTFYKSGWHTLLSGALAGGGQGIFALDVTDPSKFTESTASQVARWE FTDANDADMGYSFGQPLIVKTNNGRWSVIVANGYNSTQSDGAASTTGHAVLFVLDAET GAVTAKIDTNAGTTAAPNGLSGPVAVDTNGDGIADVVYAGDLAGNMWKFDLSSSTVSN WGVAFGTSGSPQPLFSTGGQPITVRPDVTRNLQGNYLLVFGTGQYFTTTDTASTAGQT FYGIIDKGATISGLSNLQQQSVLGTTTGPDGNTYRITTHAVGAPTLDALRSGDNAISL GSYNSSKLGWYINLPTTGERAVTDATIRSGRVIFNTVIPSTAQCSAGGTGWVMELDVF TGNRLDSPTFDTNGDGVINNSDLLQYGGSPANTSGRQVGSIPAAPGFLQPIQAPGASP FENKYVNTSAGAIQVIGETAGKGSRGRVAWRQLN" sig_peptide 712134..712211 /locus_tag="Rpic_0674" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 at residue 26" gene 715513..715872 /locus_tag="Rpic_0675" /db_xref="GeneID:6288853" CDS 715513..715872 /locus_tag="Rpic_0675" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898258.1" /db_xref="GI:187927771" /db_xref="GeneID:6288853" /translation="MKKLCVIATFVLAGNAAYGALAVGGGEPGGVTPSPASSRARPHA SEAPRMIRGVVTALNLDKGEIYVQGNRLQVGRAVRVFGPAGDEGRLSSLRLGQEIRFL LDPKDASERTISVIYFQ" sig_peptide 715513..715572 /locus_tag="Rpic_0675" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.902 at residue 20" gene 715869..716303 /locus_tag="Rpic_0676" /db_xref="GeneID:6288854" CDS 715869..716303 /locus_tag="Rpic_0676" /note="KEGG: xoo:XOO3195 type IV pilin" /codon_start=1 /transl_table=11 /product="type IV pilin" /protein_id="YP_001898259.1" /db_xref="GI:187927772" /db_xref="InterPro:IPR000983" /db_xref="InterPro:IPR001082" /db_xref="InterPro:IPR001120" /db_xref="InterPro:IPR012902" /db_xref="GeneID:6288854" /translation="MNTGLSRSRRLPRGFTLVELMITVAIVGILAVVAYPSLNGYIQK SRRADAKTALLAVAQKMEQYRSLGNTYAGATLGASGVYANTKSDNGYYALSFSVVPTQ TVYTVQAVPQAGQATDACGTFSYDQAGNKMVSGGTLTASSCW" gene complement(716349..716813) /gene="nrdR" /locus_tag="Rpic_0677" /db_xref="GeneID:6288855" CDS complement(716349..716813) /gene="nrdR" /locus_tag="Rpic_0677" /note="PFAM: ATP-cone domain protein; KEGG: rso:RSc0728 hypothetical protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator NrdR" /protein_id="YP_001898260.1" /db_xref="GI:187927773" /db_xref="InterPro:IPR003796" /db_xref="InterPro:IPR005144" /db_xref="GeneID:6288855" /translation="MKCPFCGHAATQVIDTRMSEEGDTVRRRRRCESCDRRFTTYERI ELFFPAVVKKNGSRVDYDRNKVKDSMRLALRKRPVSAEAIDEAIARIEEKLLSHGEKE IGSDRVGELVMRELKRLDKIGYIRFASVYRSFEDLAEFRDVLDEVAATNVRK" gene complement(716948..718195) /gene="glyA" /locus_tag="Rpic_0678" /db_xref="GeneID:6288856" CDS complement(716948..718195) /gene="glyA" /locus_tag="Rpic_0678" /EC_number="2.1.2.1" /note="catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate" /codon_start=1 /transl_table=11 /product="serine hydroxymethyltransferase" /protein_id="YP_001898261.1" /db_xref="GI:187927774" /db_xref="InterPro:IPR000310" /db_xref="InterPro:IPR001085" /db_xref="GeneID:6288856" /translation="MFERSRYTIDQIDPEIFAAIQKENQRQEDHIELIASENYTSPAV MAAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRVKQLFGAEAANVQPNSGSQA NQGVFFAVLKPGDTIMGMSLAEGGHLTHGMALNMSGKWFNVVSYGLNAQEDIDYDALE ALAQEKKPKLIIAGASAFALRIDFERIGKIAKSIGAYFMVDMAHYAGLIAAGVYPNPV PHADFVTTTTHKSLRGPRGGVILMKAEHEKAINSAIFPGIQGGPLMHVIAGKAVAFKE ALSPEFKAYQEQVVKNAAAMAETLMARGLRIVSGRTESHVMLVDLRAKKITGKEAEKV LGDAHITVNKNAIPNDPEKPFVTSGVRLGSPAMTTRGFKEAEAVKVAHLIADVLDNPH DEANIAAVRAKVAELTKQFPVYG" gene 718596..719348 /locus_tag="Rpic_0679" /db_xref="GeneID:6287641" CDS 718596..719348 /locus_tag="Rpic_0679" /note="PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc0730 probable oxidoreductase protein" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="YP_001898262.1" /db_xref="GI:187927775" /db_xref="InterPro:IPR001509" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR013968" /db_xref="GeneID:6287641" /translation="MIVFVTGATAGFGAAIARRFVQEGHRVIAAGRRQDRLDALKAEL GDAVLPFVLDVLDVDAVAALPGTLPEGWREVDVLVNNAGLALGLEPAQRADLTDWDRM IGTNCSGLVHMTRALLPAMVERNRGHIINIGSIAGTYPYPGGNVYGATKAFVRQFSLN LRADLTGTRVRVSNVEPGLCSGTEFSNVRFKGDDARVEKVYEGTEALTADDIAEAVYW MAALPAHFNVNAMELMPVCQSFSATSVTRGMA" gene 719418..719822 /locus_tag="Rpic_0680" /db_xref="GeneID:6287642" CDS 719418..719822 /locus_tag="Rpic_0680" /note="TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: rso:RSc0731 putative thioesterase protein" /codon_start=1 /transl_table=11 /product="tol-pal system-associated acyl-CoA thioesterase" /protein_id="YP_001898263.1" /db_xref="GI:187927776" /db_xref="InterPro:IPR006683" /db_xref="InterPro:IPR006684" /db_xref="InterPro:IPR014166" /db_xref="GeneID:6287642" /translation="MASFDWNLRVYWEDTDAGGVVFYANYLKFFERARTEWLRALGVD QQALADTTGAIFVVRSTAVDYRAPARLDDLLQIRSRMERVGPASVQFAQEGWRGDVLL ASGTIRVGCVDRLTFRPTPIPAPVLATIKAAA" gene 719819..720511 /locus_tag="Rpic_0681" /db_xref="GeneID:6287643" CDS 719819..720511 /locus_tag="Rpic_0681" /note="TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: rso:RSc0732 probable TolQ-related transport transmembrane protein" /codon_start=1 /transl_table=11 /product="protein TolQ" /protein_id="YP_001898264.1" /db_xref="GI:187927777" /db_xref="InterPro:IPR002898" /db_xref="InterPro:IPR014163" /db_xref="GeneID:6287643" /translation="MNPVEVTQDLSIVSLVLHASLLVQFVMGLLLVMSLFSWTYIFRK AFALRAARSQTESFERDFWAGGDLQALYQSAANNRHTTGALERIFEAGMREYLKAREL QRGGGDPSAILDASRRAMRAAYQREMDSLESHLPFLASVGSVSPYIGLFGTVWGIMNA FRGLSNVQQATLSAVAPGIAEALVATAIGLFAAIPAVIAYNRYATEMDRLANRFESFM EEFSNILQRQTR" gene 720524..720958 /locus_tag="Rpic_0682" /db_xref="GeneID:6287644" CDS 720524..720958 /locus_tag="Rpic_0682" /note="TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rso:RSc0733 putative TolR-related transport transmembrane protein" /codon_start=1 /transl_table=11 /product="protein TolR" /protein_id="YP_001898265.1" /db_xref="GI:187927778" /db_xref="InterPro:IPR003400" /db_xref="InterPro:IPR014168" /db_xref="GeneID:6287644" /translation="MATIQRTRRARRAKADINVVPYIDVMLVLLVIFMVAAPVVNPGV VNLPSVANATPQQTQPPIVVTIKGDGTILARIKTGSGATEQKLANNNELRAFVKQRTD ENPDQPVVIAADKSVQYDRVLTVMSVLKGDGVKRVGLMVKSS" gene 720996..722024 /locus_tag="Rpic_0683" /db_xref="GeneID:6289389" CDS 720996..722024 /locus_tag="Rpic_0683" /note="TIGRFAM: TonB family protein; protein TolA; PFAM: Tol-Pal system TolA; KEGG: rso:RSc0734 probable TolA-related transport transmembrane protein" /codon_start=1 /transl_table=11 /product="protein TolA" /protein_id="YP_001898266.1" /db_xref="GI:187927779" /db_xref="InterPro:IPR006260" /db_xref="InterPro:IPR014161" /db_xref="GeneID:6289389" /translation="MATTSLHRYEPVRERGTLRAFGLAVLTHVLLIIFLYFGVQWQSS TPRGEEAELWDEAAVQQAVQQAAPVPEVKPEPVIKAPPAKVEEEADIALEQQKRKREQ EAAAAREAELVRRAAEERAEAQRQARLKEEQQVRQAELQRKALAEHQAKEKAAEKAAA DAAQARKNAQLQAQAEAKAKAEADAKQKELKAKVAAEAKAKADAEHKANESRANAQRQ AQLDRLRAMAGAGATGTVAGSGGGVGNAQGTGGTASAGYAERVRAKVKPNILFDPSAV NGNPSAVVSVQMAPDGSILSKRLTKSSGNGAYDEAVMRAVERSDPLPRDTNGKAPSSV ILTFRPKE" gene 722091..723395 /gene="tolB" /locus_tag="Rpic_0684" /db_xref="GeneID:6289390" CDS 722091..723395 /gene="tolB" /locus_tag="Rpic_0684" /note="forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA" /codon_start=1 /transl_table=11 /product="translocation protein TolB" /protein_id="YP_001898267.1" /db_xref="GI:187927780" /db_xref="InterPro:IPR002469" /db_xref="InterPro:IPR007195" /db_xref="InterPro:IPR011659" /db_xref="InterPro:IPR014167" /db_xref="GeneID:6289390" /translation="MNMMRTMWIPMFRRAAQALLLTAACAGVAHAQLNVEISGVGASQ YPIAIANFQGEAQAPQNLSAIVRADLVRSGRFSNVDVAGAVVPESPAPDLGAWKAKGA AAFVGGTVTRNGDRYEIRFRLYDTAKGESLGGLSLTRGPGQLRLAAHEIADYIYQKLI GERGVFATRLSYVSKVGRRFQLQISDSDGANPQIALTSNEPIISPAWSPDGTKVAYVS FESKKPVVYVHDLVAGRRTVISNQKGNNSAPAWSPDGRHVAVSLSRDGNTQVYLVNAD GSGLRRLSRSSAIDTEPSFSPDGRSIYFTSDRGGAPQIYRMSVDGEEAGGAQRVTFKG NYNTSPRVSPDGKLLAYISRVGGAFRLYTQDLSNGDVNALTDTSNDESPSFAANGKFI LYATRVGGKSVLAAVSTDGRTRQVLSLQAGEVREPAWGPFMQ" sig_peptide 722091..722186 /gene="tolB" /locus_tag="Rpic_0684" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 32" gene 723425..723946 /locus_tag="Rpic_0685" /db_xref="GeneID:6289391" CDS 723425..723946 /locus_tag="Rpic_0685" /note="TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: rso:RSc0736 probable peptidoglycan-associated lipoprotein precursor" /codon_start=1 /transl_table=11 /product="peptidoglycan-associated lipoprotein" /protein_id="YP_001898268.1" /db_xref="GI:187927781" /db_xref="InterPro:IPR006664" /db_xref="InterPro:IPR006665" /db_xref="InterPro:IPR006690" /db_xref="InterPro:IPR014169" /db_xref="GeneID:6289391" /translation="MSKSQTMIKLAAIAALLALGACSSGVKLDDTAKNGTGGAAGTGA DARTVTPVDVGRDELTDPNSPLAKRSIYFDFDSYSVKSEYQGLLGQHSRYLQSHNQRK VLIQGNTDERGTSEYNLALGQKRAEAVRRALSSMGVPDSQMEAVSLGKEKPQATGHDE DSWAQNRRADIVY" sig_peptide 723425..723511 /locus_tag="Rpic_0685" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.655 at residue 29" gene 724015..724800 /locus_tag="Rpic_0686" /db_xref="GeneID:6289392" CDS 724015..724800 /locus_tag="Rpic_0686" /note="TIGRFAM: tol-pal system protein YbgF; KEGG: rso:RSc0737 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="tol-pal system protein YbgF" /protein_id="YP_001898269.1" /db_xref="GI:187927782" /db_xref="InterPro:IPR014162" /db_xref="GeneID:6289392" /translation="MNTMMKQRAYGAMRRAILMATLVAGGALTVAGPAAAGVFDDDEA RRAIIDMRDKFNNFQSTAAQRIDQNSKNLIDAQNQIETLKSEVARLRGQNEVLQNSVD TLTKQQKDYYADLDARLKKFEPQQATVDGREGMVQPNEKPEYDAALKAFQGGDFKGAG NQFSAFVKKYPQSPYLPLAQFWLGNALYAQRDYKGSSYVLENMARSNPQHPKAPDALL QVATNQGESGQKAAARKTLESVVSQYPGTEQAKTAQSRLKSMR" sig_peptide 724015..724125 /locus_tag="Rpic_0686" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.991 at residue 37" gene 724964..725638 /locus_tag="Rpic_0687" /db_xref="GeneID:6286561" CDS 724964..725638 /locus_tag="Rpic_0687" /note="TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: rso:RSc0738 hypothetical signal peptide protein" /codon_start=1 /transl_table=11 /product="exsB protein" /protein_id="YP_001898270.1" /db_xref="GI:187927783" /db_xref="InterPro:IPR004479" /db_xref="GeneID:6286561" /translation="MKKRAIVLLSGGLDSATVLAMANADGFETYALSMRYGQRHSSEL EAAKKVAAALGAVRHEIVDLDLRKFGGSALTDDALDVPTDGVQSGIPITYVPARNTIM LSLALGWAEAVGARDLFFGANAVDYSGYPDCRPEYVAAYETLANLATKAGVEGERIRV NAPIINMTKAEIIQAGVRLGVDYGLTVSCYKADDAGRACGVCDSCRIRKAGFEAAGVP DPTRYV" sig_peptide 724964..725026 /locus_tag="Rpic_0687" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.674 at residue 21" gene 725645..726760 /locus_tag="Rpic_0688" /db_xref="GeneID:6286562" CDS 725645..726760 /locus_tag="Rpic_0688" /note="PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: rso:RSc0739 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF395 YeeE/YedE" /protein_id="YP_001898271.1" /db_xref="GI:187927784" /db_xref="InterPro:IPR007272" /db_xref="GeneID:6286562" /translation="MPDIDLNVLSHTVLWGTFALTFVFGAILQRTHFCTMGAVSDVVN IGDWNRLRMWALAIGVAMIGTGCLSWLGLIDTSKTIYTASKLLWLSSLVGGLLFGFGM VLGSGCGSKTLVRIGGGNLKSVVVFVFLGLAAYMTLKGVFGVVRVATVDSVAVALPTS QDLPSVLGHAFSTDARVLRLVLALGIGGALSLWALLGRDFRTGDNLLGGIGVGLIIVG MWYVSGHLGYVQEDPNTLQEAFVATNSGRMEALSFVAPVSYTLEWLMFFSDTSKVLTV GIVSVLGVIAGSAAVALATRTFRWEGFANAEDTGNHIIGGILMGIGGVTALGCTIGQG LSGVSTLAIGSFIALAGIVIGAVLAFRYQMWRMEQLV" gene 726813..726888 /locus_tag="Rpic_R0004" /note="tRNA-Lys1" /db_xref="GeneID:6286563" tRNA 726813..726888 /locus_tag="Rpic_R0004" /product="tRNA-Lys" /db_xref="GeneID:6286563" gene 727161..727931 /locus_tag="Rpic_0689" /db_xref="GeneID:6286564" CDS 727161..727931 /locus_tag="Rpic_0689" /note="PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bmu:Bmul_1525 xylose isomerase domain protein TIM barrel" /codon_start=1 /transl_table=11 /product="Xylose isomerase domain protein TIM barrel" /protein_id="YP_001898272.1" /db_xref="GI:187927785" /db_xref="InterPro:IPR012307" /db_xref="GeneID:6286564" /translation="MADIVIVASAFGAAQVRAQGHHAYVPLAASVGAAGFEVRRELLP AGLDGTVSADLLTALGRLMAAHGLWAVYSTPAALYTDVGALDTVAVRGALVEAQTLGA RIVKFQLGGFAGDASAELLARLLRGWRARVLVENGQQAVGGSLAQFRSLFDALERADA ADMLGMTFDVGNWEWSGEAPLACARALAPYVEYIHCKSVGGEGARRFAVAPAGNDTRF LAVLAALPGDVPRGIEFPFDAVDPVADAHQHVMWLKAA" gene 727961..728950 /locus_tag="Rpic_0690" /db_xref="GeneID:6289002" CDS 727961..728950 /locus_tag="Rpic_0690" /note="PFAM: PfkB domain protein; KEGG: bur:Bcep18194_A5029 sugar kinase, ribokinase family" /codon_start=1 /transl_table=11 /product="PfkB domain protein" /protein_id="YP_001898273.1" /db_xref="GI:187927786" /db_xref="InterPro:IPR002173" /db_xref="InterPro:IPR011611" /db_xref="GeneID:6289002" /translation="MSHTLDVITYGEAMAMFVATAPGPLAQATQFTKRIAGADLNVAI GLSRLGFRVGYVSRVGQDSFGEYVLETLARERIDVSCVAVDPQYPTGFQLKSRADDGS DPRVEYFRKGSAASRLSCDDYVADYVLGARHLHLTGVAPAISASSCELAFHLAREMRA AGGSISFDPNLRPTLWPSAAEMVSTLNALASLSDWVLPGLAEGQQLTGYDTPADIARF YLDRGARGVAIKLGAAGAYYRTADGAEGIADGVRVARVVDTVGAGDGFAVGVVSALLE GLSPDLAVARGNRIGALAIQVIGDSEGLPTRAALEVLEQTARMACEPEPISNV" gene 729010..730290 /locus_tag="Rpic_0691" /db_xref="GeneID:6289003" CDS 729010..730290 /locus_tag="Rpic_0691" /note="PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bmu:Bmul_1527 major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="YP_001898274.1" /db_xref="GI:187927787" /db_xref="InterPro:IPR005828" /db_xref="InterPro:IPR007114" /db_xref="InterPro:IPR011701" /db_xref="GeneID:6289003" /translation="MATQLAARRWWMIMPIVFITYSLAYLDRANYGFAAAAGINHDLG ISQGLSSLIGALFFLGYFFFQIPGAIYAERRSVKKLVFISLVLWGLCAALTGVVSDIP SLMAIRFVLGVVEAAVMPAMLIYISNWFTKHERSRANTFLILGNPVTVLWMSVVSGYL VREFGWRHMFIAEGVPAIIWAVCWWCLVQDKPAQAPWLNPQEKRDLEQALATEQAAIK PMRNYGEAFRSPVVIKLCAQYFCWSIGVYGFVLWLPSIVKNGSSLGMVETGWLSALPY LAATIAMLAASWASDKVGSRRGFVWPFLLVGAAAFAASFALGSTHFWMSYVLLVIAGA AMYAPYGPFFAIVPELLPKNVAGGAMALINSMGALGSFVGSYFVGYLNGATGSPLASY AFMSAALLAAVVLTLCVKPQPRDAYTLAHPVPGK" gene 730295..731269 /locus_tag="Rpic_0692" /db_xref="GeneID:6289004" CDS 730295..731269 /locus_tag="Rpic_0692" /EC_number="1.1.1.215" /note="PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bmu:Bmul_1528 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding" /codon_start=1 /transl_table=11 /product="Gluconate 2-dehydrogenase" /protein_id="YP_001898275.1" /db_xref="GI:187927788" /db_xref="InterPro:IPR006139" /db_xref="InterPro:IPR006140" /db_xref="GeneID:6289004" /translation="MKPLVVAYKPLPDDVTAQLREHVELVQVDGAEALTEALTKAEGA IGASLKITSQMLDRAPRLKAWSTISVGYDNFDVPDLTRRGITLAHTPDVLTESTADTV FSLILSSARRVVELAEWVRAGNWQRSIGPELYGTDVQGKTIGIVGLGRIGAALARRAA LGFRMRVVYTNRHPHPEAEAQYGARRVTLDTLLAEADFVCLQVPLTPETQHLIGAAEL AKMKRSATLINASRGAVVDEAALIDALRNGTIRGAGLDVFEHEPLPANSPLLAMNNVV ALPHIGSATHETRHAMARCAADNLIKALVGTLRENLVNPQVLEPTRAS" gene 731349..732413 /locus_tag="Rpic_0693" /db_xref="GeneID:6286247" CDS 731349..732413 /locus_tag="Rpic_0693" /note="PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bch:Bcen2424_1729 transcriptional regulator, LacI family" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LacI family" /protein_id="YP_001898276.1" /db_xref="GI:187927789" /db_xref="InterPro:IPR000843" /db_xref="InterPro:IPR001761" /db_xref="GeneID:6286247" /translation="MTDFPSSSSRPATITDVAREAGTGKTSVSRYLNGEMQVLSEDLR QRIEAAIQRLNYRPNQMARGLKRGRNRLLGMLVADLTNPYSIEVLQGVEAACHALGYM PLICHAANEIEMERRFVQLLTTYRVEGLIVNALGAEEAVLRPLRGGGIPAVLVDRTVE GFDADLVGLDNRDAVRLGVQHLLDHGFDAIQFIVQPFEQVSSRRERELAFREAMAAQG RPAEPTVVLDPNDPASTERALAEIDARIDAVYQRGGKRLALFVANAPVALVVARHLRT QFGPAWQERAALLSIDDPEWAELIGITTIRQPTYDIGYKAVEFVHERIEGVSGDARVV LLPGTLVERASTVHSTQAAS" gene 732410..732895 /locus_tag="Rpic_0694" /db_xref="GeneID:6286248" CDS 732410..732895 /locus_tag="Rpic_0694" /note="PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: rso:RSc0745 hypothetical protein" /codon_start=1 /transl_table=11 /product="nucleoside 2-deoxyribosyltransferase" /protein_id="YP_001898277.1" /db_xref="GI:187927790" /db_xref="InterPro:IPR007710" /db_xref="GeneID:6286248" /translation="MTLRLYLAGPDVFRPEPIAHGEALKALCAEFGFSGLYPLDNTIA PQADGPATAAEIYRQNIALIDLADAVIANVADFRGHEPDSGTCFEIGYAIARGKEVWC YNVPAVPLIGQVQNANGNDADGWAVEDFGLPRNLMIACSCRLVVGDARACLERMRAHY V" gene 732997..734169 /locus_tag="Rpic_0695" /db_xref="GeneID:6286249" CDS 732997..734169 /locus_tag="Rpic_0695" /note="PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bpl:BURPS1106A_A0453 acyl-CoA dehydrogenase C-terminal domain protein" /codon_start=1 /transl_table=11 /product="Acyl-CoA dehydrogenase type 2 domain" /protein_id="YP_001898278.1" /db_xref="GI:187927791" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR013107" /db_xref="GeneID:6286249" /translation="MKLDDLHQLPDLTHLLAELAATAAQRDQQGGHAAHEKAAISRAG LLPLVIPTQYGGTGVGWEDAFATVRAIAAVDSSLGHLLAFQYLQTATVYLYGSDAQRE RFLRPTAELGWWWGNAVNPLDHRLRAQRSGSGWLLDGEKGFCSGTLGSDVMVVSAHDA ASGNPVVAVVPTARYGITVRDDWHPIGQRQTDSASVQFRHVQVSEDEVLVRPEVVLTP YQTVRSCIAQNVLVNLYTGIAAGALDEARKHTLQSSRPWITSGVERAADDPYQIHRFG EMRVQLLAAEALADRAIQRLDRAWRKGAALSADERAEVSLATAEAKVLAHRAALFVAQ ELFEATGARSTKAALALDRFWRNARTHTLHDPLDYKLRAIGRYALEGILPDATIYG" gene 734259..735161 /locus_tag="Rpic_0696" /db_xref="GeneID:6286250" CDS 734259..735161 /locus_tag="Rpic_0696" /EC_number="1.14.11.17" /note="PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: rso:RSc0746 putative alpha-ketoglutarate-dependent taurine dioxygenase oxidoreductase protein" /codon_start=1 /transl_table=11 /product="Taurine dioxygenase" /protein_id="YP_001898279.1" /db_xref="GI:187927792" /db_xref="InterPro:IPR003819" /db_xref="GeneID:6286250" /translation="MSDAVVTPDAPAVHTARFHIRRLPDAPLGAEILGLGDGADLSDA DIATIRQAWLAHDGLLVFRDVEFTPQAQVAFSRRFGPQQVHVLNQFHLSGHSEILVVS NVVENGKPIGLGDAGRDWHSDLSYKPLPSLGSMLLTRELPEEGGDTLFANMVRAYETL PANLKRIIEGRRAVHSYVYRYERLRALSTWRPPLTQAQRDAVPPVDHPVVRTHPETGK RALFVNEGFTSHIIGLPEDESTSVLEQLFAHSIRADNVYTHRWCPGDMLFWDNRSTIH FAPGCPDKYRRTLHRTTIEGDVPV" gene complement(735173..735634) /locus_tag="Rpic_0697" /db_xref="GeneID:6286404" CDS complement(735173..735634) /locus_tag="Rpic_0697" /note="PFAM: NUDIX hydrolase; KEGG: rso:RSc0747 hypothetical protein" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase" /protein_id="YP_001898280.1" /db_xref="GI:187927793" /db_xref="InterPro:IPR000086" /db_xref="GeneID:6286404" /translation="MPIALSCGLVLLNEDGEVLLAHATETRHWDIPKGAPDPGENHRD TALRETREETGLVLDGHALIELGRFPYRRDKELHLFATRLRRAEVALDTLTCTSMFHS YRTGRLIPEMDAYRWTAAEELPQYASQSLTRLFAQTLTLPSIDARLAESGL" gene complement(735636..736445) /locus_tag="Rpic_0698" /db_xref="GeneID:6286405" CDS complement(735636..736445) /locus_tag="Rpic_0698" /note="PFAM: conserved hypothetical protein; KEGG: rso:RSc0748 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898281.1" /db_xref="GI:187927794" /db_xref="InterPro:IPR005226" /db_xref="GeneID:6286405" /translation="MNGQDLSLSAWQVGIAAALILVNGALSIGLGLGLERRLAWAAVR TVVQLLAVGFVLEWVFAHAQWAVVLGIVTVMTLIAGHATGSRGARGYAGLRLDGTLSV FGSTWLIGAIGLVVVLHAHPWYQPQYAIPIMGMILGNTLTGVGLALERMTGELTATRD QVETILALGGTHWEAARNAARTAVRAGMTPIINQMTVVGVVSLPGMMTGQVLAGQSPL EAVRYQIVIMFLLAAASGLGTVAAVLLAYRRLFSREHQLLTARITQRGGTK" gene complement(736442..737116) /locus_tag="Rpic_0699" /db_xref="GeneID:6286406" CDS complement(736442..737116) /locus_tag="Rpic_0699" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc0749 probable ATP-binding ABC transporter protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_001898282.1" /db_xref="GI:187927795" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:6286406" /translation="MLAATHLQRRDARTGVTLLQSATLAVQAGDRIALTGPSGAGKSV LLRALALLDPLDDGQVTWHGQGIGPRAVPAYRCRVAYVRQRPALLPGTVEDNLHLPYQ LHVRRHSTGFDRDAAIALLVGAERDASFLDKNAADLSGGEAQIAALVRTLQTRPTVLL LDEPTAALDPASARAVEALLQHWFAQAPERHAWMWVTHDSAQAERIGRQHWKMVAGQL DTGPER" gene 737427..737792 /locus_tag="Rpic_0700" /db_xref="GeneID:6286407" CDS 737427..737792 /locus_tag="Rpic_0700" /note="KEGG: rso:RSc0750 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001898283.1" /db_xref="GI:187927796" /db_xref="GeneID:6286407" /translation="METDKVQVAHPWWQPGVFASALAIFLWICAELPPDMLGTIFHAG TSPDSLRHVGDTLFVIGWTASGALMWGGRRRVAHDADVTAQPAEAEVGATGQPHGLAG LRQSMARRWERVRHPIPLH" gene complement(737854..738381) /locus_tag="Rpic_0701" /db_xref="GeneID:6286472" CDS complement(737854..738381) /locus_tag="Rpic_0701" /note="KEGG: rso:RSc0751 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898284.1" /db_xref="GI:187927797" /db_xref="GeneID:6286472" /translation="MTDPTEHAPSPGTSVNEPASSARHHVRPSRRGAETRLPLSVRKE LLLTRAALERYDYAQARNDVHRASSRTFSLGGLGALLPSLFRPLARPNSLMRTLGIAR EYPLVGTVLSLAYAGLRRTVIGRITRKLGKVGIVAGAAWWGYKKWQEAQGEHAGAPTS APNADAEEIIPGSTS" gene complement(738378..738755) /locus_tag="Rpic_0702" /db_xref="GeneID:6286473" CDS complement(738378..738755) /locus_tag="Rpic_0702" /note="KEGG: rso:RSc0752 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001898285.1" /db_xref="GI:187927798" /db_xref="GeneID:6286473" /translation="MTDDTSPKLFASLKKLAGTVVSMLQTRLELASVELAEEKERLLG TAFLGMLAVSLIALSIMTLTALVVILCWDTYRWQSLAVMAALYALGAAACLWKVRSLL RDAPPLFEATLAELDKDREILRR" gene complement(738896..739288) /locus_tag="Rpic_0703" /db_xref="GeneID:6286474" CDS complement(738896..739288) /locus_tag="Rpic_0703" /note="PFAM: protein of unknown function DUF883 ElaB; KEGG: rso:RSc0753 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF883 ElaB" /protein_id="YP_001898286.1" /db_xref="GI:187927799" /db_xref="InterPro:IPR010279" /db_xref="GeneID:6286474" /translation="MLANKRVDILTIELPPVTEDPTMTNTSPNLADSVNKEKLMTDVK TVLSDAETLLKQAASTSGEKAAELRERGMGMLRQAKEKAQDLQDAVVHKSKAAARATD DYVHDHPWQAVGVAAGVGLLIGLLLNRK" gene 739505..740143 /locus_tag="Rpic_0704" /db_xref="GeneID:6286475" CDS 739505..740143 /locus_tag="Rpic_0704" /EC_number="1.11.1.7" /note="PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rso:RSc0754 probable antioxidant (peroxidase) oxidoreductase protein" /codon_start=1 /transl_table=11 /product="Peroxidase" /protein_id="YP_001898287.1" /db_xref="GI:187927800" /db_xref="InterPro:IPR000866" /db_xref="InterPro:IPR013740" /db_xref="GeneID:6286475" /translation="MSLRLGDIAPDFEQDSSEGRIKFHEWLGNSWGVLFSHPADYTPV CTTELGLTAKLKDEFAKRNVKAIALSVDSVESHKGWINDINETQNTSVNFPIIADPDR KVSQLYDMIHPNASETFTVRSLFVIDPNKKIRLTITYPASTGRNFNEVLRVIDSLQLT EYHSVATPGNWQDGDDVVIVPSLKDEEVIKQKFPKGYKALRPYLRLTPQPNK" gene complement(740291..741673) /locus_tag="Rpic_0705" /db_xref="GeneID:6288347" CDS complement(740291..741673) /locus_tag="Rpic_0705" /note="PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: rso:RSc0755 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="Xanthine/uracil/vitamin C permease" /protein_id="YP_001898288.1" /db_xref="GI:187927801" /db_xref="InterPro:IPR006043" /db_xref="InterPro:IPR011547" /db_xref="GeneID:6288347" /translation="MAEQSIPSSTELGAAGIADARAIDRYFQISARGSTQKREVVAGI TTFMAMVYAVFVVPGMLGKAGFDTSAVFVAVCLTTAFGSLLMGLWAKLPIAIGCAISL TAFMAFGLVLGQKLTPEIALGAVFLMGVVFTAISATGVRSWILRNLPSGVAHGTGIGI GLFLLLIASNDVGLVVKNAGAGLPVALGHVTAFPVMMSVLGLAAIFGMERRRVPGGIL IVIIAISVLGLIFDPAVKFTGVFAVPSLAAAGHASLIGTMDIRGALTAAVLPSVLALV MTAVFDATGTIRAVAGQAGLLNDKGHIINGGRALTADSISSIFSAFFGGAPAAAYIES TVGVAAGGKTGLTAVVVGVMFLAVMFFSPLAGLVPSYATAPALMYVGLLMLSSVSKLH MDDMVDALSGLVCAVFIVLTCNIVTGIMLGFSTLVIGRVVAGEWRKLNIGTVAIAAAL VAFYVGGWAI" gene complement(742083..743276) /locus_tag="Rpic_0706" /db_xref="GeneID:6288348" CDS complement(742083..743276) /locus_tag="Rpic_0706" /note="PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RSc0756 probable glutaryl-CoA dehydrogenase oxidoreductase protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_001898289.1" /db_xref="GI:187927802" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="InterPro:IPR013107" /db_xref="GeneID:6288348" /translation="MTARNAFNWADPLLLDQQLTDDERMVRDAAASYCQDKLMPRVLE SFRHEKTDASIFREMGELGLLGPTIPEQYGGPGLNYVSYGLIAREVERVDSGYRSMMS VQSSLVMVPIYEFGSEAQKQKYLPKLATGEWIGCFGLTEPNHGSDPASMITRARKVDG GYSLSGAKMWITNSPIADVFVVWAKLPNDNGEDEIRGFILEKGWKGLTAPAIHGKVGL RTSITGEIVLDEVFVPEENLMPGVRGLKGPFTCLNSARYGIAWGALGAAEACWHIARQ YVLDRKQFGRPLAANQLVQKKLADMQTEITLGLQGCLRLGRMKDEGTAAVEITSIMKR NSCGKSLDIARVARDMLGGNGISDEFGVIRHVVNLEVVNTYEGTHDIHALILGRAQTG IQAFF" gene 743380..744204 /locus_tag="Rpic_0707" /db_xref="GeneID:6288349" CDS 743380..744204 /locus_tag="Rpic_0707" /note="PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: rso:RSc0757 putative transcription regulator protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, IclR family" /protein_id="YP_001898290.1" /db_xref="GI:187927803" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:6288349" /translation="MSTTRLPDPEFDTAPAESSDPNFVTALARGLELLRAFRPGDTLL GNQEFVRRTGFPKATVSRLAGTLVSLGYLRYDDALGKYGLDAGVLALGFAYLASSDVI QLARPHMSAFAQRYGVSISLGKRDRLDMVYLETIRHDSPSMSGSSGLGVGSRLSLLSS SMGRAYLASLPAARRERLYEALRTQQPAQWAAEGAAADDAVKAGVRNGYAVSLRDWHP AIHACAVAFFAPSQREPYVVSCSAPHTSADAERIRDELAPALREFAARLGQVAEPA" gene complement(744215..745051) /locus_tag="Rpic_0708" /db_xref="GeneID:6288350" CDS complement(744215..745051) /locus_tag="Rpic_0708" /note="TIGRFAM: tryptophan 2,3-dioxygenase; PFAM: tryptophan 23-dioxygenase; KEGG: rso:RSc0758 putative oxygenase oxidoreductase protein" /codon_start=1 /transl_table=11 /product="tryptophan 2,3-dioxygenase" /protein_id="YP_001898291.1" /db_xref="GI:187927804" /db_xref="InterPro:IPR004981" /db_xref="GeneID:6288350" /translation="MQAAQGEGWHDAQLDFSKSMSYGDYLALDQILNAQHPRSPDHNE MLFIVQHQTTELWMKLMLHELRAARDCVRNDNLPPAFKMLARVSRIMDQLVQAWNVLA TMTPPEYSAMRPHLGQSSGFQSYQYREIEFILGNKNAAMLKPHAHRTEHYEQVKAALE TPSLYDEAVRYMARHGFAFDADCIERDWSRPVTYNASVEAAWLEVYRDPTHHWELYEL AEKFVDLEDAFRQWRFRHVTTVERVIGFKRGTGGTEGVGYLRKMLDVVLFPELWKLRT DL" gene complement(745092..746345) /locus_tag="Rpic_0709" /db_xref="GeneID:6289491" CDS complement(745092..746345) /locus_tag="Rpic_0709" /note="TIGRFAM: kynureninase; PFAM: aminotransferase class V; KEGG: rso:RSc0759 probable hydrolase protein" /codon_start=1 /transl_table=11 /product="kynureninase" /protein_id="YP_001898292.1" /db_xref="GI:187927805" /db_xref="InterPro:IPR000192" /db_xref="InterPro:IPR000760" /db_xref="InterPro:IPR010111" /db_xref="GeneID:6289491" /translation="MTITRNSCLERDAADPIATLRDAFALPDGVIYLDGNSLGARPKT ALARAQEVVANEWGDGLIRSWNQAGWFELPRRLGNKLAPLIGAREDEVVVTDTTSINL FKVLAAAIRVQREDAPGRKIIVSETHNFPTDLYIAEGLADLLRDGYKLRLIDSPEELE GALGDDVAVTMLTHVNYKSGHMYDMAAVSALAHKHGALAIWDLAHSAGAVPVDLHAGG ADYAIGCTYKYLNGGPGSPAFVWVAPALRERFWQPLSGWWGHARPFAMESRYDADAGI GRFLCGTQPITSMAMVECGLDIFAQTSMAALRAKSLALTDLFITLVETRCAGFPLTLV TPREHAVRGSHVSYEHPNGYAVVQALIARGVIGDYREPRIMRFGFTPLYTSYADVWDA VEILRDVLETGAWQSAQFNERTLVT" gene complement(746393..747022) /locus_tag="Rpic_0710" /db_xref="GeneID:6289492" CDS complement(746393..747022) /locus_tag="Rpic_0710" /note="TIGRFAM: arylformamidase; PFAM: cyclase family protein; KEGG: rso:RSc0760 hypothetical protein" /codon_start=1 /transl_table=11 /product="arylformamidase" /protein_id="YP_001898293.1" /db_xref="GI:187927806" /db_xref="InterPro:IPR000169" /db_xref="InterPro:IPR007325" /db_xref="GeneID:6289492" /translation="MERTLWDITPALSPTTPTWPGDTPFSQEIAWKLEGDCPVNVGRI TLSPHTGAHADAPLHYRADGAAIGQVPLDAYLGLCRVIHCVGVARVEPEHVRDALTNA PPRVLLRTYAHMPQTAWDNDFAAVAPETIALLATHGVKLIGVDTASLDPQTSKTMDAH HAVGKHGLAILEGLLLDDVPAGDYELIALPLKFATLDASPVRAVLRSLP" gene 747171..747698 /locus_tag="Rpic_0711" /db_xref="GeneID:6289493" CDS 747171..747698 /locus_tag="Rpic_0711" /note="PFAM: regulatory protein AsnC/Lrp family; KEGG: rso:RSc0761 probable transcription regulator protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AsnC family" /protein_id="YP_001898294.1" /db_xref="GI:187927807" /db_xref="InterPro:IPR000485" /db_xref="GeneID:6289493" /translation="MQLDTTDLRILQVLQEDGRISNQDLAERVALSPSACLRRVRMLE EGGAITGYRAQLGRAALGLELEAIVQVSMRQDVTGWHETFMAAVQSWPEIVAAYIITG DCNYILRVQAPNLQHYSEFIIERLYKTPGVMDIRSNIVLRTIKDRDGGLALLMEARGV RPLEGKATGKGGRAK" gene 747787..747993 /locus_tag="Rpic_0712" /db_xref="GeneID:6289494" CDS 747787..747993 /locus_tag="Rpic_0712" /note="KEGG: rso:RSc0762 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898295.1" /db_xref="GI:187927808" /db_xref="GeneID:6289494" /translation="MAKKFPLHPVHPERICWGCDKYCSTDALGCGNGSGRTQHPAELL GDDWYEFGDWGIDADAPQKPGTPA" gene complement(748006..748584) /locus_tag="Rpic_0713" /db_xref="GeneID:6287653" CDS complement(748006..748584) /locus_tag="Rpic_0713" /note="PFAM: flavin reductase domain protein FMN-binding; KEGG: rso:RSc0763 putative monooxygenase oxidoreductase protein" /codon_start=1 /transl_table=11 /product="flavin reductase domain protein FMN-binding" /protein_id="YP_001898296.1" /db_xref="GI:187927809" /db_xref="InterPro:IPR002563" /db_xref="GeneID:6287653" /translation="MDARDRESSAREASAHRRPHGRATPPDFDAAHFRHALSQFATGV TVVTTRSEGRPGTPAFVGVTASSFNSVSLDPPLVLWSLGVQANSFPLFHAGSHYVINV LAADQLALCKRFATLKGDRFANIDYRLSPTGLPILGQSLAWFECHNRSRYDEGDHVIF VGEVERCGVIDANGAPLVFHRGAFSSLTRIGD" gene 748766..749326 /locus_tag="Rpic_0714" /db_xref="GeneID:6287654" CDS 748766..749326 /locus_tag="Rpic_0714" /EC_number="1.8.4.11" /note="this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress" /codon_start=1 /transl_table=11 /product="methionine sulfoxide reductase A" /protein_id="YP_001898297.1" /db_xref="GI:187927810" /db_xref="InterPro:IPR002569" /db_xref="GeneID:6287654" /translation="MTEQRALETAVLGGGCFWCLEAVFQQVQGVHSVVSGYAGGHVDR PSYRAVCNGNTGHAEVVAVKFDPAVIPYREILDIFFAIHDPTTVDRQGNDVGPQYRSA IFAQTPEQLATARTAIAELGASDIFEAPIVTELVDAADGKVTFWRAEDEHQNYFRDHP AQGYCAFVISPKVAKFRKQFAHRLQG" gene complement(749342..750427) /locus_tag="Rpic_0715" /db_xref="GeneID:6287655" CDS complement(749342..750427) /locus_tag="Rpic_0715" /note="PFAM: protein of unknown function DUF72; KEGG: rso:RSc0765 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF72" /protein_id="YP_001898298.1" /db_xref="GI:187927811" /db_xref="InterPro:IPR002763" /db_xref="GeneID:6287655" /translation="MTDSSPIDDLFGAPLAPSDNATAEPGTSAPKPKRSPARQGVQPA VVAPDVAALAQRLPRDLRIGTSSWSYPGWDGLVYAGEYSDSMLARKGLAAYAQHPLLR TVSIDRGFYSPIPLADYVAYAASVPEDFRFAVKATSAVCDAWIRESDGRGRMANPAFL NPEFAIRDFVEPATRGLGTRCGPLVFQLSPLGALAEDATGFVERLAAFLTALPPLDPQ RNPDAVYTVELRDATLLTPRFIKMLRAAGVRYCVGLHERMPAVDRQAAAVALLDEGAG GPLVVRWNLNSRYRYAQAEAAYKPFNKLVDEDPFSRETLADMAVAALAAGRKVTILVS NKAEGSSPLSCIKLAEAIAARLPADAA" gene complement(750432..751652) /locus_tag="Rpic_0716" /db_xref="GeneID:6287656" CDS complement(750432..751652) /locus_tag="Rpic_0716" /EC_number="2.1.1.79" /note="PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rso:RSc0766 putative cyclopropane-fatty-acyl-phospholipid synthase protein" /codon_start=1 /transl_table=11 /product="Cyclopropane-fatty-acyl-phospholipid synthase" /protein_id="YP_001898299.1" /db_xref="GI:187927812" /db_xref="InterPro:IPR003333" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="GeneID:6287656" /translation="MFFQQAIDRKLEQWIQDIRESANLPVRLRLWNGDQYELGRFEQP RVTLTVREASALPLLLSPTLNNLGEAYVQEKIDLDGKLADIINVSYSLAAAAAVSSGN ALARVVRHFAHTKEGDKESIQYHYDVSNDFYKLWLDQNMVYSCAYFENGDETLDEAQI KKIDHILTKIRLQPGQTLLDIGCGWGALVLRAAQKYGARCLGVTLSQNQYDLATERVR AAGLQDQIEIRIQDYRDLTGQFDRITSVGMFEHVGRKNLPGYFRRMHDLLADGGVAMN HGITSSDTAGGESSMGGGDFIDRYVFPQGELPHISLALSAAQDGGLEALDVESLRRHY ARTLEHWAERFEANGETIRAMVGEKKYRIWRVYLAGCAHAFDADEISIFQTVLQKAGK SATTIPWSRRYIYA" gene complement(751848..752486) /locus_tag="Rpic_0717" /db_xref="GeneID:6287355" CDS complement(751848..752486) /locus_tag="Rpic_0717" /EC_number="1.4.3.5" /note="catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate" /codon_start=1 /transl_table=11 /product="pyridoxamine 5'-phosphate oxidase" /protein_id="YP_001898300.1" /db_xref="GI:187927813" /db_xref="InterPro:IPR000659" /db_xref="InterPro:IPR011576" /db_xref="GeneID:6287355" /translation="MTSIADIRTDYARASLDIADVDASPLRQFRRWFDEALKAEVAEV NAMTLATVDPHGQPSARIVLLKNLDERGFTFFTNYASHKGEELAANPRAALLFHWIGL ERQVRVQGIVEKVSEAESDAYYHSRPLGSRLGAWASEQSSEVPDRATLEAREAEYRQR FGDAPPRPPHWGGYRLLPERLEFWQGRPSRLHDRLEYRKHADGSWTIVRLAP" gene 752691..753176 /locus_tag="Rpic_0718" /db_xref="GeneID:6287356" CDS 752691..753176 /locus_tag="Rpic_0718" /note="KEGG: rso:RSc0770 putative transmembrane dehydrogenase (small subunit) oxidoreductase protein" /codon_start=1 /transl_table=11 /product="putative transmembrane dehydrogenase (small subunit) oxidoreductase protein" /protein_id="YP_001898301.1" /db_xref="GI:187927814" /db_xref="InterPro:IPR006311" /db_xref="GeneID:6287356" /translation="MAPRSHSSDTAAGLTRRQWLQGTLALAAAGLAGSQVLRAVAQAP TESLDAFMALSQALTARPALDRGVGTRLLAALGKSGADFAAQLRPLAQALAAGSLSDA QQKTALQILEAWYLGVVDGNVVTYEQALMYSVVSDTLVIRTYCPNQPGFWAEPPVERQ A" sig_peptide 752691..752816 /locus_tag="Rpic_0718" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.899) with cleavage site probability 0.570 at residue 42" gene 753176..754786 /locus_tag="Rpic_0719" /db_xref="GeneID:6287357" CDS 753176..754786 /locus_tag="Rpic_0719" /note="PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: rso:RSc0771 putative transmembrane dehydrogenase (large subunit) oxidoreductase protein" /codon_start=1 /transl_table=11 /product="glucose-methanol-choline oxidoreductase" /protein_id="YP_001898302.1" /db_xref="GI:187927815" /db_xref="InterPro:IPR000172" /db_xref="InterPro:IPR006076" /db_xref="GeneID:6287357" /translation="MADTQQADIVVVGSGVAGALVAYELARAGKSVLMLEAGPRLPRW EIVERFRNQADKMDFMAPYPSTPWAPHPEYGPPNNYLVLKGEHQFNSQYIRAVGGTTW HWAASTWRFLPNDFKLRSVYGIARDWPIQYQDLERYYGRAEEALGVWGPNDEDLGSPR SQPYPMAPLPLSFSERTIKDALNAHDASLHVVTEPVARNSRPYDGRPTCCGNNNCMPI CPIGAMYNGIVHVEKAEQAGARLIENAVVFKLEVGPNKRIVAARYKDSKGAEHRVEGK WFVLAANGIETPKLMLMSTSQDFPKGVGNSSDMVGRNLMDHPGTGVSFYADRKLWPGR GPQEMTSLIGFRDGPFRATQAGKKLHLSNMSRIEQETQRIFKEGKLIKPAELDARIRD QAARYVQFDSFHEILPLPENRIVPSASEVDAIGIPRPEITYHIDDYVKRSAVHTREVY ATAAQVMGGTNVEFHDDFAPNNHITGATIMGADPKNSVVDKDCRTFDHPNLFISSSST MPTVGTVNVTLTIAALALRIADQLKKEA" gene 754788..756071 /locus_tag="Rpic_0720" /db_xref="GeneID:6287358" CDS 754788..756071 /locus_tag="Rpic_0720" /EC_number="1.1.99.3" /note="KEGG: rso:RSc0772 putative oxidoreductase dehydrogenase (cytochrome c subunit) signal peptide protein" /codon_start=1 /transl_table=11 /product="Gluconate 2-dehydrogenase (acceptor)" /protein_id="YP_001898303.1" /db_xref="GI:187927816" /db_xref="InterPro:IPR003219" /db_xref="InterPro:IPR008168" /db_xref="InterPro:IPR009056" /db_xref="GeneID:6287358" /translation="MKTIASFSLLLLTGVVANAWAKDTPADTAQIKRGEYLAIAADCA ACHTAPGGKPFAGGLPMQIPMLGTIYSSNITPDEKTGIGKWTYEEFERAVRKGVDDDG NNLYPAMPYPSYAKINDADMRDLYAYFRNGVTAVENRRPRSTIRWPLNMRWPLKLWNL LFLKSEPYTPKSDKSPTWNRGAYLTQGLAHCGTCHTPRGFAMQEKALDERGSGYLAGS TLAGWTAFNITSDPTSGIGAWKREQLVQYLRTGSVPGVAQAAGPMGEAVQHSFSKMTM QDVQAIAEYLRTVPAVSNNLERARQDWGKPATDVTTLRGKPIETTIDAARLYLGNCAT CHQADGRGTPDGYYPPLLHNSTVGTRDTTNLVQVILFGIERKAGDRHIGMPAFGRELS NEQLAALTNYVTRQFGDPATPAVTAEAIAKRRSAK" sig_peptide 754788..754853 /locus_tag="Rpic_0720" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.981 at residue 22" gene complement(756093..758390) /locus_tag="Rpic_0721" /db_xref="GeneID:6286195" CDS complement(756093..758390) /locus_tag="Rpic_0721" /note="PFAM: AsmA family protein; KEGG: rso:RSc0773 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="AsmA family protein" /protein_id="YP_001898304.1" /db_xref="GI:187927817" /db_xref="InterPro:IPR007844" /db_xref="GeneID:6286195" /translation="MRTSGKLALGLVITPVVIVAAAVFFVLTFDWNRAKPYLNDRISQ AIGRPFAINGDLILTWKKPQGESGWRAYVPWPRLIANDITVGNPEWAKQPNVATIHQL TFVLEALPLLAHRIVIPSVTLDTPAIALERDKQHRNNWTFNLAGSEGDDKKPSDWKLD LREIAFSKGSLALDDDIKRIHLAATIDTVDNQALYSAASGAAIKSADQPTTAPTASGA SASESAAQTPAAPDPQQPYGIAWTLKGTYNNATINGTGKAGGVLRLQDAQRPYPLQAD VTVGKTRIDLAGTLTNPASLTALDLRLHLSGASMAQLYPLTGVVLPDTPPFDTRGRLI GELRRQGSTWRYEKFTGRVGGSDLGGTLTYAMREPRPQLTGELVSHQLLFADLAPIIG ADSNASKAKRADPSADPDDSKTVRQPADKVLPVEPFRTDRWNAIDADVKFTGERIIHT ADLPINHLVTHVKLQDAVLTLDPLNFGVAGGTLSSNIQLDGRATPMQARAALAARHFK IKQLFPKIESVRASVGEINGDARLSAAGNSVAALLGSSNGEVKMLVEQGTISKFILEA MGLNVGNVILTKLFGDKQVTINCAAGDFAVSNGLAQARTFVVDTQDAVIDVTGATSFR QEALDFTIHPDSKGLRVFSLRTPLYVKGTYKHPDVSVNPAVVALRAGGAVALALTAPV AAVLPVLELKPAPESACGKLLADVRQRPTAPPPGQTYHSKKPGRTPEGELKSTQPDAG KTAAPQRPAPRPATPASRDPLTTGG" sig_peptide complement(756093..756158) /locus_tag="Rpic_0721" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.963) with cleavage site probability 0.621 at residue 22" gene 758472..759374 /locus_tag="Rpic_0722" /db_xref="GeneID:6286196" CDS 758472..759374 /locus_tag="Rpic_0722" /note="PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: rso:RSc0774 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="UBA/THIF-type NAD/FAD binding protein" /protein_id="YP_001898305.1" /db_xref="GI:187927818" /db_xref="InterPro:IPR000594" /db_xref="InterPro:IPR002177" /db_xref="GeneID:6286196" /translation="MSQVAISAPAHPPILDDEYARRFGGVARLYGPQALERFAAAHVC VIGIGGVGSWVAEAVARCGVGKFTLIDLDHIAVSNTNRQIHALGDAYGVAKVDAMAER ILQINPRAEISRIDDFVTVENVEALLGHPFDYVIDAIDAVKVKTAIIAFCKRTGKRVV TCGAAGGQLDPTRIRVTDLSRTIQDPLLAKVRGNLRRQHGFSKNPKSRFGIDAVFSDE PLRYPEPEQQACAVELPVESSHAGIDDLAAAGDIAVVNAPPAPQPAQGPQGLACAGFG SSVCVTAVFGMVAASTALRAIAGV" gene complement(759387..759710) /locus_tag="Rpic_0723" /db_xref="GeneID:6286197" CDS complement(759387..759710) /locus_tag="Rpic_0723" /note="PFAM: Thioredoxin domain; KEGG: bvi:Bcep1808_2659 thioredoxin" /codon_start=1 /transl_table=11 /product="Thioredoxin domain" /protein_id="YP_001898306.1" /db_xref="GI:187927819" /db_xref="InterPro:IPR006662" /db_xref="InterPro:IPR013766" /db_xref="GeneID:6286197" /translation="MKTVNDASFQSDVIDASQRNPVVVCFAAEWSHPSQSAVASLEQM ESSYAGRATFVTMDFDENQHTADRYGVSVMPGFVVFANSQPRDGWSGVYADTIREKLD QVIPR" gene complement(759808..760224) /locus_tag="Rpic_0724" /db_xref="GeneID:6286198" CDS complement(759808..760224) /locus_tag="Rpic_0724" /note="TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: rso:RSc0777 hypothetical protein" /codon_start=1 /transl_table=11 /product="cation-binding hemerythrin HHE family protein" /protein_id="YP_001898307.1" /db_xref="GI:187927820" /db_xref="InterPro:IPR012312" /db_xref="InterPro:IPR012827" /db_xref="InterPro:IPR016131" /db_xref="GeneID:6286198" /translation="MPVIEWSEALQLGDAATDANHVEFCALLNAVADATDAEFIGALD AFIDHTEHHFAEENAWMDAADFPPRHCHRGEHDNVLALCREVHKRAAAGDMDLGRRLV AELPAWFAQHVDVMDRMMTTYLAQMGNSERNIEHVG" gene complement(760306..760971) /locus_tag="Rpic_0725" /db_xref="GeneID:6286420" CDS complement(760306..760971) /locus_tag="Rpic_0725" /note="PFAM: DSBA oxidoreductase; KEGG: rso:RSc0778 hypothetical protein" /codon_start=1 /transl_table=11 /product="DSBA oxidoreductase" /protein_id="YP_001898308.1" /db_xref="GI:187927821" /db_xref="InterPro:IPR001853" /db_xref="GeneID:6286420" /translation="MRLIYVADPMCSWCYGFGPQLADLRKRLAETLGAPAPVTLITGG LRPGQREPMAADKRDEILHHWHAVAERSGMPFDQSPAVAMRRDGFVYDTEPACRAVVM AREYWAEDDERVLAVFHAIQHAFYAEGRDTTQADVLRDVALANGVEAEHFDAVFDTDA LREETREDFRLSRRWGITGFPSLLAEQGGTLYQIGRGYAPSVALFARAVEVLQQHPTP DAG" gene complement(760981..761826) /locus_tag="Rpic_0726" /db_xref="GeneID:6286421" CDS complement(760981..761826) /locus_tag="Rpic_0726" /note="KEGG: rso:RSc0779 putative thioredoxin protein; TIGRFAM: thioredoxin; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; Thioredoxin domain; SMART: Tetratricopeptide domain protein" /codon_start=1 /transl_table=11 /product="thioredoxin" /protein_id="YP_001898309.1" /db_xref="GI:187927822" /db_xref="InterPro:IPR001440" /db_xref="InterPro:IPR005746" /db_xref="InterPro:IPR006662" /db_xref="InterPro:IPR013026" /db_xref="InterPro:IPR013105" /db_xref="InterPro:IPR013766" /db_xref="GeneID:6286421" /translation="MSDITSQNFAQEVIETSRQIPVLVDFWAPWCGPCRTLGPMLEKL EAEFAGKWKLAKINSDENPELSAQFHVRSIPYVVAFVDGKPVDQFVGVLPEAQLRAFL DRVIPQPAEVAYREGLAASQAGETAHAREAFQNALAFDPGFDAARFALVNLLLDSGDV HAAQDEFALLSPKAPQDERYAPLETRLRATERADTLPDAGALRTVVEAQPDNLQARLD LAQQYIAAQDYEAALEQLLAIVERDRAFRDDIARKTMVSVFDMMRDAPQAVSHWRRQL ASKLN" gene 762026..763732 /locus_tag="Rpic_0727" /db_xref="GeneID:6286422" CDS 762026..763732 /locus_tag="Rpic_0727" /note="activates fatty acids by binding to coenzyme A" /codon_start=1 /transl_table=11 /product="acyl-CoA synthetase" /protein_id="YP_001898310.1" /db_xref="GI:187927823" /db_xref="InterPro:IPR000873" /db_xref="GeneID:6286422" /translation="MTRPHFQFWPRRLPHNISSPQTSLWYNLEVSARRYPDKDAIIFY GRHTTFRELHDDAVAVAGWLQQVAGVQKGDRVLLYMQNCPQFMAAYYGILRADAVVVP VNPMNRPEEFKHYITDAGAATVICSADLAVNVTTANAELPEAQRTRHLLVTSYADALP ARYEYPEDAPPAWITAQHPAQPGAVAWNDALAQRLTPGPHTAGPDDLAVMPYTSGTTG FPKGCMHPHRTVMHNIVGGSMWSNGTKEGVSLSIIPLFHVTGMQYGMNAPIYMGSTVV MLPRWDREVAGRLISRYKITHWTNIPTMVIDFLASPQLAEFDLSSLAYIGGGGAAMPQ AVAERLLKDFNLAYQEGYGLSETIAPTHSNPADRAKQQCLGIPVFNTDARIVDPQTLQ ELPIGEVGEIIVSGPQVFLGYWGKPQASAEVFIEFEGKRFFRTGDLGRMDEDGYFFLT DRLKRMINASGFKVWPAEVESLLYKHPDVQEACIIGKRDAYRGESVKAVVVLKAHAKG KTTEDDIINWARDNMAAYKYPRVVEFVDALPKSGTGKVMWRTLQEQENARNEAAEKPA AA" gene complement(763772..764566) /locus_tag="Rpic_0728" /db_xref="GeneID:6286423" CDS complement(763772..764566) /locus_tag="Rpic_0728" /note="PFAM: Ankyrin; KEGG: rso:RSc0781 probable ankyrin repeat harboring signal peptide protein" /codon_start=1 /transl_table=11 /product="Ankyrin" /protein_id="YP_001898311.1" /db_xref="GI:187927824" /db_xref="InterPro:IPR002110" /db_xref="GeneID:6286423" /translation="MLIAPHPALNQLIGVMLGMALAVGDMANAWQEQHLPILHVAASA GAKVAPGATHAADTRPVRRSDPATRDRDLILAAQAGNTMAIQSLLAEGASLKARDADG RTALIAAVMAHMGAAARLLIQAGADVNLQDNTQNSAFLLAASQGDAETVRLALSHGAN LRATNADGDTALIPAARRGYVEVVNELVKAGVPPDATNNLGLTALIEAVALGDGSDKY EKTVQLLLDGGADPNLADRGGITPMRHARQRGFHGIGALLFKARGH" gene complement(764578..765327) /locus_tag="Rpic_0729" /db_xref="GeneID:6287594" CDS complement(764578..765327) /locus_tag="Rpic_0729" /note="PFAM: ChaC family protein; KEGG: rso:RSc0782 hypothetical protein" /codon_start=1 /transl_table=11 /product="ChaC family protein" /protein_id="YP_001898312.1" /db_xref="GI:187927825" /db_xref="InterPro:IPR006840" /db_xref="GeneID:6287594" /translation="MAVTREDLEQNRLRAALGDSPVASSLLTEAALEASLASTLARLS AAHGDCQDAWVFGYGSLIWNPMIFHTEAARATVHGYHRGFYLYSRINRGTWDNPGLVL GLDRGGSCRGVAFRVPRDHAEREFRVLWRREMLTGAYLPRWLPTEINGRRVLALAFVM NRAHEAYAGRLPDERVVGCLREAVGLYGPAREYLQRTLIGLASNGLHDPYLDRLWSRL QATDAANAPSATTDAADATDTAPLPDPYLSA" gene complement(765465..765540) /locus_tag="Rpic_R0005" /note="tRNA-Cys2" /db_xref="GeneID:6287595" tRNA complement(765465..765540) /locus_tag="Rpic_R0005" /product="tRNA-Cys" /db_xref="GeneID:6287595" gene complement(765605..765958) /locus_tag="Rpic_0730" /db_xref="GeneID:6287596" CDS complement(765605..765958) /locus_tag="Rpic_0730" /note="PFAM: peptidylprolyl isomerase FKBP-type; KEGG: rso:RSc0784 probable FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)(immunophilin) protein" /codon_start=1 /transl_table=11 /product="peptidylprolyl isomerase FKBP-type" /protein_id="YP_001898313.1" /db_xref="GI:187927826" /db_xref="InterPro:IPR001179" /db_xref="GeneID:6287596" /translation="MTIETTASGLQYEDVVVGDGAQATAGQYVTVHYTGWLYENGQAG KKFDSSKDRNDPFAFHLGGGMVIKGWDEGVQGMKVGGTRKLIIPAALGYGARGAGGVI PPNATLLFEVDLLEV" gene complement(766000..766551) /locus_tag="Rpic_0731" /db_xref="GeneID:6287185" CDS complement(766000..766551) /locus_tag="Rpic_0731" /note="PFAM: YaeQ family protein; KEGG: rso:RSc0785 hypothetical protein" /codon_start=1 /transl_table=11 /product="YaeQ family protein" /protein_id="YP_001898314.1" /db_xref="GI:187927827" /db_xref="InterPro:IPR009822" /db_xref="GeneID:6287185" /translation="MALKSTIYKVDLQIADMDRHYYANHALTVARHPSENDERMMVRV LAFARHASETLAFTRGLSEPDEPELWQRDLTDAIELWIDLGNPDDTRIRKASNRAEQV AVYTYSGNASRVWWQQTETKITRFANVSVYEVAADTVAALAAMVERTMRLQVTIQDGD IWIANDADNVHVQLETLKAATAA" gene 766724..769585 /locus_tag="Rpic_0732" /db_xref="GeneID:6287186" CDS 766724..769585 /locus_tag="Rpic_0732" /note="KEGG: rso:RSc0786 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898315.1" /db_xref="GI:187927828" /db_xref="GeneID:6287186" /translation="MRWIFGIVGLLLGGLSGGVVGAFFGAVIGLGLASLILYMDKRAS AQWANPPDGTGTTGAGQGHAAAQAAVSPPPATLQERVARLEHEVSLLRRQLAEIRGGT FAAPADMEASAVESPPTATEALPAVEALAAPVPAPQVAVTQPTPQPVPQPVPVLAPHE PDWVERAVGAARDWLLGGNSVVRVGILVLFFGVAFLLKYAADNSLLPVEFRLAGVAVG AIVLLGIGWRLREKRPGYALVLQGGGVGVLYLTVFAATRVVPLLSPGMAFPLLVLICA LAAGLAVKQNAPALAFTGSAGGFLAPILISTGQGSHVALFSYYALLNAGIFAIAWFRA WRALNLLGFVFTFGIATAWGVLRYQPSLLASTEPFLILFFLMYVGIALLTALRRHVSL TNYVDGTLVFGTPLVAMGLQTGLVHHIPFAMAWSATALAAFYLGIAGWLARRRASLGL LYEAMFALGVIFITLAIPLAFDGRTTSAVWALEGAAVVWLGVRQQRRLALAAGVLLQL AAGAAFAVDAVFDWAPQSGWAVLNSRYIGGVLIALAGVFSGWRLHGKAEVRAWLKAAP VLGIVASVWGLLWWLGSGSNEIDRWAWRIASKTVDRPDIPLYAAFAVLTAWAAHGLRR KLDWALAEWPALALSPVLALISLAAIEHWVPSPLAGWGGLVWIAAVVLAFVLLRRQER DVKDRILAPLHTVLFWLICGVLATEGYWRLDAYVPEGTWSFAAWAYAYGALLALLAGA GWRIRWPIARFERAYLLWGAAPLAALLWLWSLASAASEGNAAPLFYLPILNPLDVAQL LVFLAIALWMRRVALRKLVPEPMVIGYAIGATLFIWANAVLLRTLHHWTHIPYTLDDL GASMLVQASLSMFWTVLALAVMVFATRRASRALWFTGGALLGVTVVKLFLFDLSRVTG VERIVSFIGIGVLLLLIGYLSPLPPKPKTSAGAETGEVL" sig_peptide 766724..766789 /locus_tag="Rpic_0732" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.954) with cleavage site probability 0.724 at residue 22" gene 769582..770904 /locus_tag="Rpic_0733" /db_xref="GeneID:6287187" CDS 769582..770904 /locus_tag="Rpic_0733" /note="KEGG: rso:RSc0787 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001898316.1" /db_xref="GI:187927829" /db_xref="GeneID:6287187" /translation="MKKVALAMAAASLLSAPAWAERFALTGTPGASYYAVTLSEDVYA HAREANLADLRILNGDGEPVPFTVDIPRDPAPQARTLHDVHWFATPIDDAQKPGAAGV VLGTDGVLRATGAQLSQASVRAWVVDLSQLRDTVTALIVALPGAEFQSGVSVQASDDL QHWSPVAQATLFRLSNQGSTLVQDRIEFTGLRAKYLRLTWQGKPPVPDAVRAELAAGV PVALADSAIQWRPGLAPVQTPAAGDYQFDTGGVFPVERVKIRLPQANTVAQATFYARA DAQAPWRPVTSARLFRLAGADGKGEQESAAITVPATGERYWRLQVDTRGGGLGAGAPQ LAIGWRPATVTYAARGNVPFMLAVAEVARGNPVARADLLAGASPAIAQAQLGAMSDSP ADALTAEPPGGRQRQWVLWGALLAAVAVLGGMAWRLFRAPSVPPDAST" sig_peptide 769582..769644 /locus_tag="Rpic_0733" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 21" gene complement(770967..771350) /locus_tag="Rpic_0734" /db_xref="GeneID:6287188" CDS complement(770967..771350) /locus_tag="Rpic_0734" /note="KEGG: rso:RSc0788 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001898317.1" /db_xref="GI:187927830" /db_xref="GeneID:6287188" /translation="MPIALWCVLVAAVLPIVCVGIAKAKGPRYDNRNPRGWLAQQTGV AARAAAAQQNHFEAFPLFAVAVLVAILGGGVIDRINLLAIAFIVVRVLYTVCYLANWA PLRSLMWFAGFALCVALFVQPAFAH" sig_peptide complement(770967..771041) /locus_tag="Rpic_0734" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.909) with cleavage site probability 0.891 at residue 25" gene complement(771438..771659) /locus_tag="Rpic_0735" /db_xref="GeneID:6286711" CDS complement(771438..771659) /locus_tag="Rpic_0735" /note="KEGG: rso:RSc0789 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898318.1" /db_xref="GI:187927831" /db_xref="InterPro:IPR002942" /db_xref="GeneID:6286711" /translation="MPNIDFALTTEYIELHKLLKLTGVVDSGGAGKAVVADGAVTVDG QPELRKTAKIRAGQVVMLGDVRIAVQGID" gene complement(771686..772249) /locus_tag="Rpic_0736" /db_xref="GeneID:6286712" CDS complement(771686..772249) /locus_tag="Rpic_0736" /note="PFAM: YceI family protein; KEGG: rso:RSc0790 probable signal peptide protein" /codon_start=1 /transl_table=11 /product="YceI family protein" /protein_id="YP_001898319.1" /db_xref="GI:187927832" /db_xref="InterPro:IPR007372" /db_xref="GeneID:6286712" /translation="MRTWIVLLAGLFTTPALAASFAPDLAHTSVYFGASHFDRSTMRG RFDKIDGAINFDEATHQGGFDFTVDADSINTRLRVLDGVLKSEQFLDAAKFPVIRLRS DRFVVESGKLVAVEAQLTLHGVTQPVRLEARRFSCGDEKMPGSTRHVCGGDFHLAIAR SAFGMTRFLPDVGDRVDIDISVEATPQ" sig_peptide complement(771686..771742) /locus_tag="Rpic_0736" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.953 at residue 19" gene complement(772294..774024) /locus_tag="Rpic_0737" /db_xref="GeneID:6286713" CDS complement(772294..774024) /locus_tag="Rpic_0737" /EC_number="6.1.1.18" /note="catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA" /codon_start=1 /transl_table=11 /product="glutaminyl-tRNA synthetase" /protein_id="YP_001898320.1" /db_xref="GI:187927833" /db_xref="InterPro:IPR000924" /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR004514" /db_xref="GeneID:6286713" /translation="MSQDNATAPTSNFLRQIIDADLAQGTYADRKDATGQPIPPVVTR FPPEPNGYLHIGHAKSIWVNFGMARDYNGRCHLRFDDTNPVKEDTEYVDSIIDAVHWL GYSWSDAGGEHLYYASDYFEQLYGFAEVLIQRGVAYVDSQSAEQIAANRGDFTRPGTL SPFRDRSVDENLALFRDMRAGKYKDGEHVLRAKIDMAAPNIVMRDPVLYRIRHAHHHR TGDAWCIYPMYDFTHCISDALENITHSLCTLEFENNRPLYDWVLDHLRDAGVLAAPLP HQYEFARLHLTYAITSKRKLLQLVTEKRVDGWDDPRMPTLVGIRRRGYTPESIQLFCE RVGVSKADSWIDMSILEGAVRDDLDARAPRSVAVLDPVKLVLDNVPADFNEPCSAPVH PKQPELGRREFPLTRELWIEREDFTETPPKGYFRLFPGNKVRLRYGYVIECTGCDKDA AGNITAVHANIIPDTKSGTPGADSVKVKGNIHWVSAAHALEAEVRLYDRLFSDPQPDS GDKNFLDALNPNSKKIVKAFLEPTLATAKAEDRFQFERHGYFVADRIDSQPGKPVFNR VVGLKDSWGK" gene complement(774087..775139) /locus_tag="Rpic_0738" /db_xref="GeneID:6286714" CDS complement(774087..775139) /locus_tag="Rpic_0738" /note="PFAM: lipase chaperone; KEGG: rme:Rmet_3795 lipase chaperone" /codon_start=1 /transl_table=11 /product="lipase chaperone" /protein_id="YP_001898321.1" /db_xref="GI:187927834" /db_xref="InterPro:IPR004961" /db_xref="GeneID:6286714" /translation="MKPLSPSIQPMTFVVAVLVAVSVAGGVYWWHTSDAPDTPVASQP QAAKGAFIGSAGGEPSTTGAPAPELADTQAPDGLQVDARGHLIVEAANRAVLDYFLDV PASLPEAQRVSMAEAHLRAKLITPALAEAQSLLQRYLAYRKAAAQSGATSRNKPSLEQ VQQRPELIATLRQQLSDRSALRRQYLGADVAQAWYGDDDAMDAAAIDRVAVMADPSLT QEQRAARIAAIDASLPASVQQARRDASAPLKLAADMETWTKQGMSEAEMRQRLSARGV DNLVADRLIQGNREEADWHNRYDAYTRERDRINAFAGLSDADRAAQIAQLRQQTFTAS HELLRAQALDGLAQRR" sig_peptide complement(774087..774164) /locus_tag="Rpic_0738" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.818) with cleavage site probability 0.396 at residue 26" gene complement(775170..776168) /locus_tag="Rpic_0739" /db_xref="GeneID:6287169" CDS complement(775170..776168) /locus_tag="Rpic_0739" /EC_number="3.1.1.3" /note="PFAM: alpha/beta hydrolase fold; Protein of unknown function DUF676 hydrolase domain protein; PGAP1 family protein; KEGG: bte:BTH_II0639 lipase" /codon_start=1 /transl_table=11 /product="Triacylglycerol lipase" /protein_id="YP_001898322.1" /db_xref="GI:187927835" /db_xref="InterPro:IPR000073" /db_xref="InterPro:IPR007751" /db_xref="InterPro:IPR008262" /db_xref="InterPro:IPR012908" /db_xref="GeneID:6287169" /translation="MSQTSLLHAVYGSARSFLRTHAAAAVLAASALSLGAVAPAQAAS TYAATKYPIVLVHGLSGTSKFLGVVDYWYQIPEDLRANGANVYVADVSAFNDETVRGE QLVSQIRSVLAATGAAKVNLIGHSQGGLTSRYAAAVVPNLVASVTTIGTPHKGSEFAD FVESTPAPFQALVNLGADVFGSVLGWFNGNSNPQNGFAALHILSTSGAADFNKAFPSA GLASGCNTGSATDERNGNVQKLYSWTGRSTATNLLDLFDPVLVFSGGVMQARGSGTND GLVSVCSAKFGQVLSTDYAWNHLDEVNQLLGLIGWSAADPVAVIRTQANRLKTAGL" sig_peptide complement(775170..775298) /locus_tag="Rpic_0739" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.986 at residue 43" gene complement(776359..777861) /locus_tag="Rpic_0740" /db_xref="GeneID:6287170" CDS complement(776359..777861) /locus_tag="Rpic_0740" /note="PFAM: protein of unknown function DUF112 transmembrane; KEGG: rso:RSc0793 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF112 transmembrane" /protein_id="YP_001898323.1" /db_xref="GI:187927836" /db_xref="InterPro:IPR002823" /db_xref="GeneID:6287170" /translation="MDLFANLALGFSTALSIQNLIYAFIGCVLGTLIGVLPGLGPIAT IAMLLPATYALPPVAALIMLAGIYYGAQYGGSTTAILVNLPGESSSVVTTIDGYQMAR RGRAGVALATAGLGSFFAGCVATLVLAAFATPLSEFAFNFGPAEYFSLMVLGLIGAVV LASGSLIKAIAMIVLGLLLGLVGTDVNSGTARYSFDVPELADGLNFVSVAMGVFGFAE IIANLEQKEHRETFVEHVRNLWPSREDFKRMIPAVLRGTALGSLLGILPGGGATLASF ASYSLEKKTSKYSSEFGKGAIEGVAGPESANNAAAQTSFIPLLTLGIPPNAVMALMVG AMTIHNIQPGPQVMTSNPALFWGLIASMWIGNLMLIVLNLPMIGVWVRLLKVPYRFLY PAILVFCCIGVYSVSNTTFDIFQTALFGLIGYMFVKLRCEPAPMLLGFVLGPMMEENF RRALLLSRGDFSTFVTRPLSMGLLIAAGILVLLVALPVINRKREEAFQEE" gene complement(777881..778339) /locus_tag="Rpic_0741" /db_xref="GeneID:6287171" CDS complement(777881..778339) /locus_tag="Rpic_0741" /note="PFAM: protein of unknown function DUF1468; KEGG: rso:RSc0794 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1468" /protein_id="YP_001898324.1" /db_xref="GI:187927837" /db_xref="InterPro:IPR009936" /db_xref="GeneID:6287171" /translation="MIRSHQDFASGVMFIVAGAAFAILARSYRMGTASSMGPGYFPFW LGVVLVLLGVVVVVQSLSSKGVVDRIPRWDVKTLLWVLGSVVLFGLLLQPLGLVLSLV VLVLVSSMASHEFTLKGAAGTAIVMVVMSLAAFVYGLKLQFPVWPAFIGN" sig_peptide complement(777881..777949) /locus_tag="Rpic_0741" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.894) with cleavage site probability 0.684 at residue 23" gene complement(778601..779053) /locus_tag="Rpic_0742" /db_xref="GeneID:6287172" CDS complement(778601..779053) /locus_tag="Rpic_0742" /note="KEGG: rso:RSc0795 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001898325.1" /db_xref="GI:187927838" /db_xref="GeneID:6287172" /translation="MWLDALLAYLHYISIFTLIVFLTAEAVVLRPDMTPEIRKRLARY DAVFGFAALAVLITGLLRVFYGAKGYAFYVHNPVFHVKVGLFILVGLMSIVPTINILR WKKQGKTLPDFVPTPSEIAKTRRWVMVESHLIIFIPLAAVLMARGIGM" gene complement(779099..780319) /locus_tag="Rpic_0743" /db_xref="GeneID:6288635" CDS complement(779099..780319) /locus_tag="Rpic_0743" /note="PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rso:RSc0796 putative transmembrane protein" /codon_start=1 /transl_table=11 /product="L-carnitine dehydratase/bile acid-inducible protein F" /protein_id="YP_001898326.1" /db_xref="GI:187927839" /db_xref="InterPro:IPR003673" /db_xref="GeneID:6288635" /translation="MGALSHLRVLDLTRVLAGPWCAQNLADFGADVIKVERPGAGDDT RTWGPPWLKDEAGQDTAEAAYYLAANRNKRSITVDISTPEGQDIVRQLAAHADVVLEN YKVGQLAKYGLDYASIKAVKPDVVYCSITGFGQTGPYAARAGYDFIVQGMGGFMSLTG ERDDLPGGGPQKAGVAISDLMTGMYATVAVLAALAHRDRTGEGQYIDMALLDVQVAML ANMNTNYLASGQAPKRWGNAHPNIVPYQTFQAANGWIIVAVGNDGQFRRFVDAGGMPE LADDPRFATNPQRVANRDVLVPILAEMVKRLSKGEWIDKLEAAGVPCGPINSLDEVFN NEQVQARGLRVDLPHPSAGTVKLVGSPVKMSATPPKAASHPPLLGEHTEAVLRDVLNL NREQIETLRARGVI" gene 780478..783144 /gene="alaS" /locus_tag="Rpic_0744" /db_xref="GeneID:6288636" CDS 780478..783144 /gene="alaS" /locus_tag="Rpic_0744" /EC_number="6.1.1.7" /note="Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA" /codon_start=1 /transl_table=11 /product="alanyl-tRNA synthetase" /protein_id="YP_001898327.1" /db_xref="GI:187927840" /db_xref="InterPro:IPR002318" /db_xref="InterPro:IPR003156" /db_xref="InterPro:IPR012947" /db_xref="GeneID:6288636" /translation="MLTPAPRDMKASDIRQKFLTFFEGKGHTVVRSSPLVPGNDPTLL FTNSGMVQFKDVFLGTDKRPYVRAASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGN WSFGDYFKRDALVWAWELLTQEYKLPAEKLWATVYQTDDEAYDIWTKVIGLPPERVVR IGDNKGAPYASDNFWQMAETGPCGPCSEIFYDHGPDVWGGPPGSPEADGDRYIEIWNN VFMQFDRQLDPATGEYTLTPLPAPCVDTGMGMERLAAILQHVHSNYEIDLFQALIAAA ARETNTKDLANNSLRVIADHIRACSFLIVDGVIPGNEGRGYVLRRIIRRAIRHGYKLG CRAAFFHKLVDDLVAQMGEAYPELREARDRVVEVLRTEEARFFETIEHGMSILDAALG ELKTSGAKMLDGELAFKLHDTYGFPLDLTQDVCRENDVIVDEAAFDAAMNRQREQARA AGKFKMAAGTLDYTGDKTTFHGYEQLVRETARVTALFVDGASVQEMHPGQTGVVVLDH TPFYAESGGQVGDQGTLKAATVWFDVVDTLKVQPDVFGHHGELRTGVLKVGDAVAAEV DAVRRARTMRNHSATHLMHKALREVLGSHVQQKGSLVDAEKTRFDFSHNAPMTPLQIR EVEARVNAEIFANAATNAQLMGFDDAVKNGAMALFGEKYGDEVRVLSIGSSKELCGGT HVARTGDIGLFKIVSESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSE LTSRIVQVQDQVKTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKT LRETMDKLKDKLQTAAIVLGSVSDGKVALIAGVTADATAKVKAGELVNFVAQQVGGKG GGRPDMAQAGGTEPDNLPQALAGVAAWVQQKV" gene 783599..784714 /locus_tag="Rpic_0745" /db_xref="GeneID:6288637" CDS 783599..784714 /locus_tag="Rpic_0745" /note="PFAM: purine nucleoside permease; KEGG: rso:RSc0798 putative purine nucleoside permease protein" /codon_start=1 /transl_table=11 /product="purine nucleoside permease" /protein_id="YP_001898328.1" /db_xref="GI:187927841" /db_xref="InterPro:IPR009486" /db_xref="GeneID:6288637" /translation="MSVLSDKVDAPPPQPPHRLLGRKGKRLAHAVAVGALLAAGVGAS TQPGAQLAPESHARKVKVLIISMFAPEAQPWIDKLGLTQDVPVPGLSIDYPNVHCNAS DVCQLTTGMGKANAASSVSALIYSGKFDLQRTYFLVAGIAGIDPSQGTLGSAAWARFL VDSDIAWEIDAREVPANWPGGFIGINTQGPGQKPPLDYKTEVFRVNEALLQKALALSK GAVLDDNATARAYRANYPSAPANQPPSVVQCDTAAGNTYWHGAKLGEREAAWVKLLTD GQGTYCTTQQEDNATFEALTRGSKAGLLDLQRVAVLRTASNFDRPYPGQTPYDSLVNS NSGGFVPSLNNLYLAGGPLVNEIVTRWSVWKHGVPSP" gene 784711..785760 /locus_tag="Rpic_0746" /db_xref="GeneID:6288638" CDS 784711..785760 /locus_tag="Rpic_0746" /note="PFAM: purine nucleoside permease; KEGG: rso:RSc0799 putative purine nucleoside permease protein" /codon_start=1 /transl_table=11 /product="purine nucleoside permease" /protein_id="YP_001898329.1" /db_xref="GI:187927842" /db_xref="InterPro:IPR009486" /db_xref="GeneID:6288638" /translation="MIDSRLKMPMPRLRAIAKLCAVGAAALTLNSCAYDGVKVIVINM FQGEAQPFIDRYDLKEKVYISGLSPDAPNMLCNYDGICQVTTGMGYANAASTISALLY RSKLDLSHTYFVIAGIAGIDPGQGTVGSAAWARYAVDYGLSHEIDAREMPAGWPYGYF GIGTKGPGQKPPMDYRTEVFQLNETLLQKAYTLSKSATLEDSPEAIAFRKNYAYAPAN QPPAVIQCDVASADTWWAGRNLGQRARDWVKTMTDNKGTYCTTAQEDNATLEVLTRGA RAGKVDFSRVALLRAGSDFDRPYDGQSASDGLINFAQQGGFVPATHNLVNAAKPLLDD IVQHWPQWKQGVPAN" sig_peptide 784711..784812 /locus_tag="Rpic_0746" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.996 at residue 34" gene 785992..788100 /locus_tag="Rpic_0747" /db_xref="GeneID:6289802" CDS 785992..788100 /locus_tag="Rpic_0747" /note="TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RSc0800 putative ferrisiderophore receptor signal peptide protein" /codon_start=1 /transl_table=11 /product="TonB-dependent siderophore receptor" /protein_id="YP_001898330.1" /db_xref="GI:187927843" /db_xref="InterPro:IPR000531" /db_xref="InterPro:IPR010105" /db_xref="InterPro:IPR012910" /db_xref="GeneID:6289802" /translation="MNRHLAARAFSCALAAIPLAVSTLAHAEAGQPATGGATVDLNET TVTAGSQRGFAASTAQVGAFRGMVLRDIPATVNVVTREALDAQQDTSLYDALRNTAGV TRQQLSGETFDNLAIRGVTLENRTNFRFNGSMPMAALTAIPLEDKERVEVLKGVSALY YGYTTPGGVVNFVTKRAGNTPVTTLGMQFDSNGTAVGTLDVGRRFGEDNQYGIRFNAA GGSLQSPTSGIDGTRQLAAVAFDWKVNSRLSLKADVEYSRKVITEQSVVTLPAAKNGI ITLPAMPDPSKRISPGWADFDGNNTNALLRADYALADAWLLTVEGGMSETARTRAFSE FKLTNALTGAGTLSGQRQNGRWNTSHLRADVSGTEKTGWITHDLTFGVARSDMRQAAV YSDRFSGTQNLYNPVDLGWLPTTGTGFTAEQRAVDTGVYALDRMTLSEHWQVILGLRY TRYTSEQAPNRYEASKTTPLGAVIYKFTPALSAYASYAQGLEAGARPPNTAANANVAM PPALSEQKEVGVRYETPAGTQLAAAVYDIDRAASYTNDANIFVQDGRERIRGIELTAQ GRVTQDLSLLASAGWTDAKFRGVGNGLDGKTPENTPRSTASVFAEYTLPMLRAVSFNA GAYYLGPRPVNDANQAELGGTTLFSAGVRYVTRISGKRATLQFNVDNLTDKRYWAGAG NNRLSMGAPRLFKLGMKIDL" sig_peptide 785992..786075 /locus_tag="Rpic_0747" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.990 at residue 28" gene complement(788107..788865) /locus_tag="Rpic_0748" /db_xref="GeneID:6289803" CDS complement(788107..788865) /locus_tag="Rpic_0748" /note="PFAM: band 7 protein; KEGG: rso:RSc0802 putative stomatin-like transmembrane protein" /codon_start=1 /transl_table=11 /product="band 7 protein" /protein_id="YP_001898331.1" /db_xref="GI:187927844" /db_xref="InterPro:IPR001107" /db_xref="InterPro:IPR001972" /db_xref="GeneID:6289803" /translation="MLYGFFSAGGLIFLAVLLVISSFRVLREYERGVVFLLGRFWRVK GPGLVLIVPAIQQMVRVDLRTVVMDVPPQDVISHDNVSVKVNAVVYFRVVDPERAIIQ VANYLEATSQLAQTTLRAILGKHELDEMLAEREKLNLDIQKVLDIQTDPWGIKIANVE IKHVDLNESMIRAIARQAEAERERRAKVIHAEGELQASEKLLEAARMLAQQPEAIQLR YLQTLTQIAGDRSSTIVFPLPMEVLGAVKKAAGG" gene complement(788877..790271) /locus_tag="Rpic_0749" /db_xref="GeneID:6289804" CDS complement(788877..790271) /locus_tag="Rpic_0749" /note="PFAM: protein of unknown function DUF107; KEGG: rso:RSc0803 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF107" /protein_id="YP_001898332.1" /db_xref="GI:187927845" /db_xref="InterPro:IPR002810" /db_xref="GeneID:6289804" /translation="MRPSLRMRRWTGWLAAVIAAVWTSLAVAAAPVVVLPVNGAIGPA SAAYVIRGLQQARDRGAQLVVLQMDTPGGLDASMRQIIQAILASPVPVAGYVAPGGAR AASAGTYILYACHVAAMAPATNLGAASPVAIGMGGHAPSPGDGAKPASAPSASSSNED TLARKQMHDAAAYIRGLAQLRGRNAEWAERAVREAVSLDATEAASQHVVDLVAASLPD LLKQVDGRAVRTSAGDVTLRTAEATIVTLEPDWRNHFLGVITDPSLALLLLTVGVYAL IFEFSTPGMVVPGILGAVCIVVALYGLQMLPINYAGLALIALGLGCMVAEAFLPTFGA LGVGGIVAFVLGAVMLIDTQTPGFGVPLPLIIGLAFVSLTVVLALSSLAVRARRRPIV TGGDTLIGMTGEVVDVDTPDADADSDGWARIHGERWRVRCDGGIARGDQVRVIARRGL TLMVEPVAPLAASS" sig_peptide complement(788877..788963) /locus_tag="Rpic_0749" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.499 at residue 29" gene complement(790346..791254) /locus_tag="Rpic_0750" /db_xref="GeneID:6289805" CDS complement(790346..791254) /locus_tag="Rpic_0750" /note="PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc0804 probable transcription regulator protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_001898333.1" /db_xref="GI:187927846" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:6289805" /translation="MDLSSLEIFRTVVREGGVTRAAQQLNRVQSNVTTRIRQLEASLG VQLFVRESKRMVLTPAGQTLLTYADDILRLAAEARQAVQPSEPHGRLRIASMESTAAS RLPALLATLHQRWPRVQLELVTMTTRHSLQALSNFEVDCAFVAETACLNNTRAAMTTL PAFAEELVLIAHRAHPPIRRAADVQTAGMLAFEPGCAYRQLIEDWFAADGVVPSRVLE LGSYHAIIACAAAGIGVALVPRSVLELYTNAPEISIHTLGKPGRVDTLLAWHRDMAGP ALQALVQVLSEPQAAASKTAREAIAA" gene 791357..792571 /locus_tag="Rpic_0751" /db_xref="GeneID:6287559" CDS 791357..792571 /locus_tag="Rpic_0751" /note="PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: rso:RSc0805 hypothetical protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF1228" /protein_id="YP_001898334.1" /db_xref="GI:187927847" /db_xref="InterPro:IPR010645" /db_xref="InterPro:IPR011701" /db_xref="GeneID:6287559" /translation="MEHTLSSTPALSAAHSQRAAAWRVAVAGMVALSVAMGIGRFAFT PILPMMLHDGSLTLAQGSWLATGNYLGYFVGALACMAVRGDAARLIRTGLVATVLLTA GMGVLQGQPAWLLLRFAAGMASALVFVFTAGWCLHRLTELGHAALGGIIFCGPGLGIA IPGLAASGMVALGWHATSAWIAFGVLSALLSAAVWSTIRPEAPAHAAPAPAASGKAPG LDAPTSALTIAYGLAGFGYIITATFLPVIARKVLPAGSLWPDLFWPMFGAGVALGAFL STRISLARDNRSLLATAYGMQAVAVTISIVWPTVAGLALSSTLLGLPFTAITLFAMRE ARRLWPHAVPRLMGLMTAAYGIGQIAGPPLANRLFAATGGFNASLAVAAVSLMAGVVI FLVVKRVAPARA" sig_peptide 791357..791416 /locus_tag="Rpic_0751" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.880) with cleavage site probability 0.390 at residue 20" gene 792647..793432 /locus_tag="Rpic_0752" /db_xref="GeneID:6287560" CDS 792647..793432 /locus_tag="Rpic_0752" /note="PFAM: class II aldolase/adducin family protein; KEGG: rso:RSc0806 hypothetical protein" /codon_start=1 /transl_table=11 /product="aldolase II superfamily protein" /protein_id="YP_001898335.1" /db_xref="GI:187927848" /db_xref="InterPro:IPR001303" /db_xref="GeneID:6287560" /translation="MSFALRPDAVVPGGEISQAERAVRVDLAAAYRLAALNGWDDLVY THLSASVPGEPDHFLINAFGLAFDEITASNLVKINGRGQLVGVWPDAATHPSVNVTGF ALHAAVHAARPDAQCVIHLHNTAGIAVSAQKHGLLPLSQHALRFHRRIAYHDYEGLAF TPEEGSRLTASLGNRFAMLLRNHGTLTIGRTVAEAHVLMATLIKACEIQIHALAGGEV VAPAPEVAERSAEQLEDGGAIEGVIEWPALLRKLDKIDASYRD" gene 793488..793676 /locus_tag="Rpic_0753" /db_xref="GeneID:6287561" CDS 793488..793676 /locus_tag="Rpic_0753" /note="4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown" /codon_start=1 /transl_table=11 /product="4-oxalocrotonate tautomerase" /protein_id="YP_001898336.1" /db_xref="GI:187927849" /db_xref="InterPro:IPR004370" /db_xref="GeneID:6287561" /translation="MPTFHIEMFEGRSVEQKRKLVEEVTRVTCESLGCAPGAVDIIIT DIKRENWATGGVLWSEQK" gene 793711..794757 /locus_tag="Rpic_0754" /db_xref="GeneID:6287562" CDS 793711..794757 /locus_tag="Rpic_0754" /EC_number="4.1.2.5" /note="PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rso:RSc0808 probable low specificity L-threonine aldolase protein" /codon_start=1 /transl_table=11 /product="Threonine aldolase" /protein_id="YP_001898337.1" /db_xref="GI:187927850" /db_xref="InterPro:IPR000192" /db_xref="InterPro:IPR001597" /db_xref="GeneID:6287562" /translation="MQPKQHFASDNYAGFCPESLKYFLEANGSGHEPAYGDDLWTQRV CDRIRDLFETDCEVFFVFNGTAANSLALSSLCQSYHSVICHELAHIETDECGGPEFFS NGSKLLTAKGENGKLTPDAVEALVTRRSDIHYPKPKVVSLTQSTEVGTVYTVDEVRAI AAIAKRRQLRVHMDGARFANAVASLGVHPSEITWRAGVDVLCFGGTKNGLPVGEAVVF FDRRLAEDFAYRVKQAGQLASKMRFISAPWLGLLENDVWLRNARHGNAMAQLLHARIA DVPGVRIMFPTESNAVFAELPVPAIEALRARGWRFYTFIGAGGCRLMCSWDVQPETVE AFAADIRAACAQAV" gene 794772..795353 /locus_tag="Rpic_0755" /db_xref="GeneID:6286389" CDS 794772..795353 /locus_tag="Rpic_0755" /note="PFAM: NUDIX hydrolase; KEGG: rso:RSc0809 hypothetical protein" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase" /protein_id="YP_001898338.1" /db_xref="GI:187927851" /db_xref="InterPro:IPR000086" /db_xref="InterPro:IPR002667" /db_xref="GeneID:6286389" /translation="MSFDYRFCPQCATPLVEQHNAGRLRIACPGQDCGFVHWNNPLPV LAAVVEYRGQMFLARNALWPEGMFALVTGFLERDETPEEGIARELKEETNLDAQSISL IGVYEFIRKNELIIAYHVVADGEIALSEELVEYRLKPFEKVRPWTAGTGYAVADFLTA RGLPVSYIDIRTGEPAEPPPRQWQPTRLVTIPE" gene 795401..795628 /locus_tag="Rpic_0756" /db_xref="GeneID:6286390" CDS 795401..795628 /locus_tag="Rpic_0756" /note="PFAM: SirA family protein; KEGG: rso:RSc0810 hypothetical protein" /codon_start=1 /transl_table=11 /product="SirA family protein" /protein_id="YP_001898339.1" /db_xref="GI:187927852" /db_xref="InterPro:IPR001455" /db_xref="GeneID:6286390" /translation="MEFQKEIDARGLNCPLPILRTKKALADMQSGDVLKILATDPGAT RDFQAFAKQTGNELLEHSEHDKVFTFYMRRR" gene complement(795723..796589) /locus_tag="Rpic_0757" /db_xref="GeneID:6286391" CDS complement(795723..796589) /locus_tag="Rpic_0757" /note="PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rso:RSc0814 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="Lysine exporter protein (LYSE/YGGA)" /protein_id="YP_001898340.1" /db_xref="GI:187927853" /db_xref="InterPro:IPR001123" /db_xref="GeneID:6286391" /translation="MTHAWRAVTDRSAFCKPFLPRSPRSPKNETSVDAAVGVLSTWDR YRIAKIYGFLYLLAESRPVLACKLFALSADSDFAMPTLTNLLTFALVALGMVLTPGPN MIYLISRSICQGRNAGLVSLAGIATGFVFYMLCAAFGITALLMAVPFAYDALRFGGAI YLLYLAWQAVRPGGRAPFQVRELPVDSPRKLYTMGLLTSLLNPKVAVLYLSLLPQFIE PAHGSVLVQSVCLGLTQICVSVTVNSMIAATAGSIAAFLSRKPSWLSVQRYLMGTVLT SLALRMAMEARK" gene 796644..799100 /locus_tag="Rpic_0758" /db_xref="GeneID:6286392" CDS 796644..799100 /locus_tag="Rpic_0758" /note="PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rme:Rmet_4989 endonuclease/exonuclease/phosphatase" /codon_start=1 /transl_table=11 /product="Endonuclease/exonuclease/phosphatase" /protein_id="YP_001898341.1" /db_xref="GI:187927854" /db_xref="InterPro:IPR005135" /db_xref="GeneID:6286392" /translation="MRLHFLLAAVLSVALPAQAELLISEYVEGSSNNKAIEIYNPDGA EADLSVYKIEQYNNGASTPTASFALSGKLAPGAVHVMAHSTLASVLGSRVNQTAAFSF NGDDALRLTRSGVVVDRIGQVGYQPPSGFWGTASAGTKDHTLRRQGTVKAGDTDSTAA FNPSLQWDAFNIDDFSDLGLYNGQGTVTPPPAVAMCGAPATHLADVQGAGATSPLVGL NVEIEAVVTADYSGATGFNGFFVQQPDAQRRRLSGVSEGLFVYAPGVSARAGDLVHLV GKVDERYGQTQLTLATGGIASCASGNRVTPVDVTLPVADAKALSAYEGMLVRLPQTLT VSETYELGRYGSVLLSNGRLPLPTNVAPPAHGAAAQAAANALNRIVLDDGSNQQNPAS VRYPAPGLSATNPVRAGYTVSGVQGVLEMRYNAWRLQPVPGAAAPVFNAAANPRAGAP VRHAQADVRVASFNVLNYFNGDGKGAGFDDPANRGAKTQAEFERQEAKIVAAIRALNA DVVGLMEIENDGYGDLSAIRRLTSQLGADWRYVDPGVPKLGGDAITVAIVYNSRTVEP VGAPATLAIDNRNRQPLARSFRRIGDTQNFTVVVNHLKSKGCSGATGKDADQGDGQSC WNPTRVRAAGLIADWLATSPTGVADVGQLLIGDLNSYAKEDPVVLFAQKGYADMVAKF VGKDAYSYVYGGESGYIDHALATPGLAERVRAVHEWHINADEPIALEYAFGHKSAEQQ QTFYAPDAYRSSDHDPVLVDLALNTQTAGGGTSPEGDAAAGAATGSTGVGGAGAVDPI LGLVLAAAAVALARRRACRS" sig_peptide 796644..796703 /locus_tag="Rpic_0758" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 20" gene 799291..801747 /locus_tag="Rpic_0759" /db_xref="GeneID:6288770" CDS 799291..801747 /locus_tag="Rpic_0759" /EC_number="2.7.13.3" /note="KEGG: bpd:BURPS668_A0191 sensor protein EvgS; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; SMART: extracellular solute-binding protein family 3" /codon_start=1 /transl_table=11 /product="multi-sensor hybrid histidine kinase" /protein_id="YP_001898342.1" /db_xref="GI:187927855" /db_xref="InterPro:IPR001638" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR008207" /db_xref="GeneID:6288770" /translation="MGTGGDVSNVAAAVRALILGFWLGLMSGGSNAAPTSLFTPEEDA WIAAHPIVRTCVDAHWRPFEFVKAGKVVGMVPSFLDAVAHVSGLRFDYVDGACWNGSL AALKLGQVDMLPDWSKDEAVAPYRDGYIASTPYYVGTIAIVTAEQENLFASFSQLSGK RLAIKGGGGLELAIRRSSVPVKLVTFQNESDALQAVVDGDADAALGTDASIVPQLHRQ FKGQLFLSGSLWDRPYALTMVTRGDNPVLASILDKSLTAISASEADAIRQRWQETTDY GAPSLASILHYRWRQVALVAIIVLAFAVLAYVLWRARVAAVRSEREKAMFLAFISHEI RTPMHTILASLELLQRSQLTGQQASRADAAVSASETLLALLDDVLEYSRLESRSVTLV LQPTAIGPWAEQALDMVRWRSDEKKLALSLDLACAPDFSVDIDAMRVRQIVLNLLVNA IKFTTVGKVVLRVDYLPGKRRGSGTLVLEVRDTGMGIPPERQRNIFEPYARVESPGNR GASGTGLGLSICHELVELMGGVITVSSSPEVGTVFTVMLPAREARAAMALPKAAAAAG ASAPHAISPPRAAKAPSPESEEGPLVLVVDDHEAVQHAIQHQLDALACRSAIAGTGEA ALEQFASASFDMVLLDCNLPGIDGYTVAQRMREIERQRAGERTPIVAISAATDDAHRI RCFDSGMDGVLGKPLRLAALRELIELWCAHGDSARNAEPMEHDLAPSSDVLAIYRQTM KTDLEMLSQGIARRDIEQARRAAHRISGAAAVVEDLPTRNLARELERRLSDSFSDINA EIQALLVALQSLHGAEAPDA" sig_peptide 799291..799389 /locus_tag="Rpic_0759" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.870) with cleavage site probability 0.869 at residue 33" gene complement(801757..801882) /locus_tag="Rpic_0760" /db_xref="GeneID:6288771" CDS complement(801757..801882) /locus_tag="Rpic_0760" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898343.1" /db_xref="GI:187927856" /db_xref="GeneID:6288771" /translation="MQGYVDEAAEMEDWDNTRRRPPQVGSTARMPAERDQADTGP" gene 802086..802670 /locus_tag="Rpic_0761" /db_xref="GeneID:6288772" CDS 802086..802670 /locus_tag="Rpic_0761" /note="PFAM: Fimbrial protein; KEGG: pfo:Pfl_3042 fimbrial protein" /codon_start=1 /transl_table=11 /product="Fimbrial protein" /protein_id="YP_001898344.1" /db_xref="GI:187927857" /db_xref="InterPro:IPR002048" /db_xref="InterPro:IPR014779" /db_xref="GeneID:6288772" /translation="MKAKLFLAGFAMSALSSVAMAQTVNKVDGVINFQGAILNDTCKV SSVTGDAGTINVNMGNIAADDIGTVAAPKRLTNGAGSANFDVVCKKGAKVSMKFAGKV AELSADKKTLRVNNGNTADGFAQGVDIAVYEGTGASANAFDLSNGDLLAQTEVPAAGG SLNVRFAAAYVAADPAKVKPGIANASLPFTLSYE" sig_peptide 802086..802151 /locus_tag="Rpic_0761" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 22" gene 802755..803501 /locus_tag="Rpic_0762" /db_xref="GeneID:6288773" CDS 802755..803501 /locus_tag="Rpic_0762" /note="PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: pfo:Pfl_3043 pili assembly chaperone" /codon_start=1 /transl_table=11 /product="Pili assembly chaperone, N-terminal" /protein_id="YP_001898345.1" /db_xref="GI:187927858" /db_xref="InterPro:IPR001829" /db_xref="InterPro:IPR016147" /db_xref="InterPro:IPR016148" /db_xref="GeneID:6288773" /translation="MKAKRFAVGAALACALAASASHASISLGTTRVIFDGKNKESSVV VINDGADALIQSWLDPLDDVAHTQLPFAITPPLAKVGAKQQQLLRVLYEGVGMPADRE SAFWLNVQEIPQAASKDNVLQLAVRQRIKVFYRPVGLGGDPLKAATSLQWQLNQDAGK AMLRLTNPSLYHVTVVDAKLHTGNKDEPVVDAKMIAPGSTVALPVNVPAGHTGAPELR YEVINDFGGRESYRVTLQGNQPSAPVSAGN" sig_peptide 802755..802826 /locus_tag="Rpic_0762" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.990 at residue 24" gene 803619..806177 /locus_tag="Rpic_0763" /db_xref="GeneID:6288982" CDS 803619..806177 /locus_tag="Rpic_0763" /note="PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pfo:Pfl_3044 fimbrial biogenesis outer membrane usher protein" /codon_start=1 /transl_table=11 /product="fimbrial biogenesis outer membrane usher protein" /protein_id="YP_001898346.1" /db_xref="GI:187927859" /db_xref="InterPro:IPR000015" /db_xref="GeneID:6288982" /translation="MSKRPTTKPVPRKIDGKAFAARPRANPLYLALCLAVFNSARAAE GETLVAQAAPTLLAFNTNFLHGQGRPADLSAVLSSGNSVPPGTYRVEVQVNGNLVGRR DVDFHQEGGKGKVRPCLTAQMLQDFGVDLTAITPALDLNSQACLDLPQLMDQAVVDFD AGRLQLNLSIPQAFLSRAARGYVDPALWDEGVTAGYVNYQFSGNYGHGRVGNDSSSYY LGLQNGVNIGRWRLRNESALSGSNDGQTRFKSNRTLLQRDVDAIKGQLTLGEQYSDAT LFDSVRFRGVQVSSDDAMLPDSERGYAPVVRGQAATNAVVEVRQSGYVLYRANVPPGP FQLTDIFPTGSNGDLEITVIEADGTRRVTHQAFSSLPLMLRKGRLKYAFAAGKYDGDQ TASPKLVAGSLVYGFTDNSTVAGGFQASRDFQALNMGVGTNTPIGALSLDITQSSSRV QGKRDTGQSVRVLYAKTFTRTNTNFTLAAYRYSTSGYRTFSDHVNDLGNAGVQAGRSR SRIDLTTSQDLGGPQREYGSVYLNISQQTYWNQPGSSRSISVGYGNTWKRLSYNLSLS QTKDSRFGNNGSNTQVMLTMSIPLGGKLHSQRAYTNVSNDSNGGTNIQSGLSGFASEK TSYAMQAGYTNGGRGATGGASITHEADAGQLSANVNVANDYQSASIGAMGAVVVHGGG VNLSRTVGDTFALMKMEGLRGVDVRTEAGTSVGRNGYAVVSYAQPYRLNALRPDTHNL GADIELTDTVKQVVPRRGAIVQATFKGYSGQRAQFTFQQADGKPVPFGASVEDAQTGR QLGIADPNGSAFVLLGQEQGTLSVKWKEGQCQAPYALPKAEAGRNYQRQTLRCR" sig_peptide 803619..803747 /locus_tag="Rpic_0763" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.960 at residue 43" gene 806255..806644 /locus_tag="Rpic_0764" /db_xref="GeneID:6288983" CDS 806255..806644 /locus_tag="Rpic_0764" /note="KEGG: pfo:Pfl_3037 fimbrial protein" /codon_start=1 /transl_table=11 /product="fimbrial protein" /protein_id="YP_001898347.1" /db_xref="GI:187927860" /db_xref="GeneID:6288983" /translation="MQKNLYRLESDHLLRGFCMTAFFLAALLSSPADAANCTIRQGAV VKQLAFQIPSSFTVPRDAPIGTVIYESAPITNSAQDTLSFTCTAAFRWGLVNSVGGIP PAATKVDMPIGNTGLAWGLVYKRESLE" sig_peptide 806255..806359 /locus_tag="Rpic_0764" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 35" gene 806641..807270 /locus_tag="Rpic_0765" /db_xref="GeneID:6288984" CDS 806641..807270 /locus_tag="Rpic_0765" /note="PFAM: Fimbrial protein; KEGG: pfo:Pfl_3037 fimbrial protein" /codon_start=1 /transl_table=11 /product="Fimbrial protein" /protein_id="YP_001898348.1" /db_xref="GI:187927861" /db_xref="InterPro:IPR014779" /db_xref="GeneID:6288984" /translation="MTAEQLAAISLASSKAAGPYTFLGTSFSLRIKKIGPVAPGAAVE AGLLGYANINNEFNAFIVRTSTKASVTAQSCKTPDVIVQMGDRNRVGQFKGVGTSLAP VNFSINLNECPSGISKVSYLLKPNTQILDAAQSVVALDAESVAKGVGLQVLNQNGEPA VLNEKVAFSEYDKAGGSFSISLKAAYRQTAPVVGAGTANSSLTFVMSYE" gene complement(807413..807769) /locus_tag="Rpic_R0067" /db_xref="GeneID:6288985" tmRNA complement(807413..807769) /locus_tag="Rpic_R0067" /note="tmRNA as predicted by Rfam (RF00023), score 191.75" /db_xref="GeneID:6288985" gene complement(807802..811584) /locus_tag="Rpic_0766" /db_xref="GeneID:6288743" CDS complement(807802..811584) /locus_tag="Rpic_0766" /note="PFAM: protein of unknown function DUF748; KEGG: rso:RSc0896 putative transmembrane protein" /codon_start=1 /transl_table=11 /product="protein of unknown function DUF748" /protein_id="YP_001898349.1" /db_xref="GI:187927862" /db_xref="InterPro:IPR008023" /db_xref="GeneID:6288743" /translation="MSSSPDSRPDLQSNTAGWRARLDRLRGTAGWQRAAQVGTSRRTK RIGIGVLIFLVMFGLLGAFGGPPLLHHLAQTQLSQLLERPVSVGKISINPYTLRLDVD QLHIAERDGKTPFVDVGHLHVNASWSSIFRRAPVIEELSIDAPHVRIVRTAEQRFNFS DIVDKLSQPETAPKPKSNEPARFVFANLQLTNGAIDFVDQPLGGQHKVEGLQIGVPFV ASLPADVDIFVQPLLVARIDGAPLHFAGKTKPFADSLESNLNVKIDGLDLPRYLGYVP GPLPVAVPQGKLTTDLTIDFQKPKSGTPVLRVHGTTGLDNLEVVDARKAPLVAAKQVR ATLADVRPLDNVFHLDALTLDGVRVNATRGADGAINFAQLAGKPAPAEAKAATAEAAT TAKPKPLDVAVNKLQLTNSTVHWRDATTQPAADLILEDLHGDIRVRTLGGPTSLDVGA KLAQGGTLNVKGNTSLEKNTGELELKLDGVKLVGISPYLRQAGAPQLQSGALSADGKV ALEFGPDKFNVRAEPLTASLADLSLAPATGKDTALRAKLLRAEVKRFDLSARTIALNE VRADGLQIDALRKKDGTTTLTLLDGPQSVAGKSTAPAKSSAKSNAPAEKPWAVTVQTL KLDNSAVGFEDQSNSRPVKVRVEPLNVVVQNASSDLGKPVSVQIGAGLGAKGKLDVRG EVVPQPLKADLRVNSQNLSLAGFDPYLDKSLNAAITSALLSMDGRLVLNQGKALTVNY QGNATLGNVRLQDRVSSDDFLRWRSLALNRIQANYDGTTPRVRVGAMALSTFYARIII NPNGRLNLQDIRVQPTEERRSLTQSEPASASAAAASAPAAAPVTASAPTAAPASAVTV TATGPTPKAGGADLRVDAITLQDGNIRFTDNFVKPNYTANLTAIGGSIGTISTAANQT PADVTLRGSVDSTAPVDIHGKVNPLAPMAFVDLTAKADGVELTNLTPYSAKYAGYPIT KGKLTMDLHYLLDQGKLTADNHIFIDQLTFGDRVESKDATNLPVRLAVALLKNSRGEI DVRVPVSGSLDDPQFSIGGVILRAFVNLIARAVTAPFSLLASAFGGSGGEELGYIEFD PGTSNIGQASLAKLDKLGTALKDRPALKVDIIGRVDPEFDRDGLRREAVNRQIREQKL KDAGDAAEADTTVKPEEENKYLERAYKAAKFPKPRNVIGLAKSLPPDEMRKLMETNVQ VTDADLRELAQRRANAVHVALAERVDPGRLFVVAPKLNAEGIKDKGKTTRVDFSLK" gene complement(811703..812392) /locus_tag="Rpic_0767" /db_xref="GeneID:6288744" CDS complement(811703..812392) /locus_tag="Rpic_0767" /EC_number="3.1.3.18" /note="KEGG: rso:RSc0897 probable hydrolase protein; TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase" /codon_start=1 /transl_table=11 /product="phosphoglycolate phosphatase" /protein_id="YP_001898350.1" /db_xref="GI:187927863" /db_xref="InterPro:IPR005833" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006346" /db_xref="InterPro:IPR006402" /db_xref="InterPro:IPR006439" /db_xref="GeneID:6288744" /translation="MTARQFPDPLGAVLFDLDGTLADTAPDLAAAANKVRTDRGLEPV DYEALRPVASHGARGLIGVAFGVRPGDAEFESLRLAFLANYEAEICVRTQLFPGMAEV LVELGRAGVPWGIVTNKSGRLTVPLVARLPLPVPPACVVAGDTTPHAKPHPAPLLHAA ESIGIDARQIVYVGDDLRDIEAGRAAGMPTIAASYGYCGNGPSPAEWRADALIASAAE LIPLLLESQRA" gene complement(812389..813120) /locus_tag="Rpic_0768" /db_xref="GeneID:6288745" CDS complement(812389..813120) /locus_tag="Rpic_0768" /EC_number="2.1.1.64" /note="Involved in ubiquinone biosynthesis" /codon_start=1 /transl_table=11 /product="3-demethylubiquinone-9 3-methyltransferase" /protein_id="YP_001898351.1" /db_xref="GI:187927864" /db_xref="InterPro:IPR010233" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR013217" /db_xref="GeneID:6288745" /translation="MAQRNMTTTHANADPGELEKFSELAHRWWDPNSEFKPLHEINPL RLGWIQSIAPLAGKRIVDVGCGGGILSESMARAGADVKGIDLSRKALRVADLHSLEAG VTVDYEEIAAEALAAREPASFDVVTCMEMLEHVPDPASVVRACATLVKPGGYVFFSTI HRNAKAYLLAVIGAEYVLNMLPRGTHDYAKFIRPSELSAFVRGAGLQAQEMCGLEYNP ITGRYALTQDASVNYLMATRRPAEA" gene 813266..813757 /locus_tag="Rpic_0769" /db_xref="GeneID:6288746" CDS 813266..813757 /locus_tag="Rpic_0769" /note="PFAM: 17 kDa surface antigen; KEGG: rso:RSc0899 probable outer membrane lipoprotein transmembrane" /codon_start=1 /transl_table=11 /product="17 kDa surface antigen" /protein_id="YP_001898352.1" /db_xref="GI:187927865" /db_xref="InterPro:IPR008816" /db_xref="GeneID:6288746" /translation="MKSKQILIGLGVAGLTVLAGCAAPGYGGGYNGGYAQQPPAYGGQ PQQTGALYGRVESIQPMQAPANSPGILGTIIGGVAGGILGHQVGGGTGNTVATIGGAA LGAYAGNQVEQRAGAGGQTVYRITVRLDDGRVATVTQRNPNNLRVGDRAMVANDQATP SYQ" sig_peptide 813266..813334 /locus_tag="Rpic_0769" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.727 at residue 23" gene complement(813941..814597) /locus_tag="Rpic_0770" /db_xref="GeneID:6287959" CDS complement(813941..814597) /locus_tag="Rpic_0770" /note="PFAM: OmpA/MotB domain protein; KEGG: rso:RSc0900 probable signal peptide protein" /codon_start=1 /transl_table=11 /product="OmpA/MotB domain protein" /protein_id="YP_001898353.1" /db_xref="GI:187927866" /db_xref="InterPro:IPR002368" /db_xref="InterPro:IPR006664" /db_xref="InterPro:IPR006665" /db_xref="GeneID:6287959" /translation="MKKFAKLAFAAAAVAMAASAYAQSVPYEKKAVNDNWGNGTSEWV WKNGTNELCWRNGFWTPATANAQCDGALAPAAAPTAAPAAPAAPVVSSEKVTFAADTL FDFDKAVLKPEGKAKLDDLVSKLNGINLEVVIAVGHTDSFGSDKYNDRLSVRRAEAVK GYLVSKGIEANRVYTEGKGKRQLKVDPKSCKGARKAQIACQQPNRRVDVEVVGTRKAQ" sig_peptide complement(813941..814009) /locus_tag="Rpic_0770" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.989 at residue 23" gene 815029..817698 /locus_tag="Rpic_0771" /db_xref="GeneID:6287960" CDS 815029..817698 /locus_tag="Rpic_0771" /EC_number="5.99.1.3" /note="negatively supercoils closed circular double-stranded DNA" /codon_start=1 /transl_table=11 /product="DNA gyrase subunit A" /protein_id="YP_001898354.1" /db_xref="GI:187927867" /db_xref="InterPro:IPR002205" /db_xref="InterPro:IPR005743" /db_xref="InterPro:IPR006691" /db_xref="GeneID:6287960" /translation="MDQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPV HRRALYSMHELNNDWNRPYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYML VDGQGNFGSVDGDNAAAMRYTEIRLSKIAHELLADLDKETVNFEPNYDGSETEPSVLP ARIPNLLINGSSGIAVGMATNIPPHNLNEVVDGCLHLLRNPEATVDELIELIPAPDFP TAGIIYGISGVREGYRTGRGRVVMRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLER IAELVTEKRIEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNM VALVDGQPRLLNLRQMLECFLLHRREVVTRRTVFDLRKARERGHILEGLAVALANIDE FIAIIKAAPTPPVAKAELMNRSWDSGLVRDMLVRAESETSGGGAAYRPEGLLPVFGMQ GDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQEYREVMAQIADLLDILARPERITAI IVEELTAIRAEFGDERRSQIEHNATELDTEDLITPQDLVVTLSHSGYMKSQPISEYRA QKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGR PIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVD LDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPMGRQARGVRGMNLEETQQVI AMLVAPAETEGEGAQSVAGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNG KVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLISVGEGNKLSGLQRV MESDAEGAESIEGADAADAAPDADAQADDSSET" gene 817827..818387 /locus_tag="Rpic_0772" /db_xref="GeneID:6287961" CDS 817827..818387 /locus_tag="Rpic_0772" /note="KEGG: rso:RSc0902 probable signal peptide protein" /codon_start=1 /transl_table=11 /product="putative signal peptide protein" /protein_id="YP_001898355.1" /db_xref="GI:187927868" /db_xref="InterPro:IPR002110" /db_xref="GeneID:6287961" /translation="MHKSLKLKHLIVVAGFAPLFAFAQAGDADKTAAIKDLLTTMNVD AAIKGQGEVLASGAKQEAPLVLEQALVENKTLNDKQKQAAVDKLKKNGAVQRMTDGAG KDFDTEAFRKDALQAHYDSLGKYYSTQEIKDLTTFLKTPSGQKFMANQGKAMQEVWGN VMQKYGPQVGKKMRDMADKEVAAAAK" sig_peptide 817827..817904 /locus_tag="Rpic_0772" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.733 at residue 26" gene 818501..819637 /locus_tag="Rpic_0773" /db_xref="GeneID:6287962" CDS 818501..819637 /locus_tag="Rpic_0773" /EC_number="2.6.1.52" /note="catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine" /codon_start=1 /transl_table=11 /product="phosphoserine aminotransferase" /protein_id="YP_001898356.1" /db_xref="GI:187927869" /db_xref="InterPro:IPR000192" /db_xref="InterPro:IPR003248" /db_xref="GeneID:6287962" /translation="MNQADRALQASQARVYNFSAGPAVLPLEVLEQAKEEMVSWHGSG MSVMEMSHRGREFENILAAAFSDLRQLLAVPDNYEILFLQGGAIAENAIVPLNLMRRL SADAPKADYVVTGTWSVKSQQEARKYGEVNIAATSETERFHKIPDVSSWKLSSDAAYV HLCTNETIVGVEYQETPDVGQAHGRVVVSDVSSHILSRPIDWNGYQVLYGGAQKNIGP AGLTIAIVRKDLLGHAHPLCPSAFNWRLVAENGSMYNTPPTYAIYIAGLVFQWIKRQG GVEALETRNIIKSKMLYDFIDASSFYRNEIHPTCRSRMNVPFFLNDESRSEAFLAQAR ERGLVQLKGHKSVGGMRASIYNAMPLEGVEALVDFMREFERVSA" gene 819725..820840 /locus_tag="Rpic_0774" /db_xref="GeneID:6286918" CDS 819725..820840 /locus_tag="Rpic_0774" /note="TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: rso:RSc0904 probable bifunctional protein: chorismate mutase and prephenate dehydratase" /codon_start=1 /transl_table=11 /product="chorismate mutase" /protein_id="YP_001898357.1" /db_xref="GI:187927870" /db_xref="InterPro:IPR001086" /db_xref="InterPro:IPR002701" /db_xref="InterPro:IPR002912" /db_xref="InterPro:IPR010957" /db_xref="GeneID:6286918" /translation="MTSQSDDTKQNKDAALAAELAPLRTQIDAIDNQLLSLLSDRAKV AQEVGEVKKRYSSPAFRPDRELQVIRKMQSGNQGPLHDESIAAIWREVMSACRGLEQA LRIGYLGPAGTFSEQAVIAHFGHEIQPMPCPSIDEVFRAAESGTVDCGVVPVENSTEG VVSRTLDLFLQTSLKISGEIALRVHHNLLHKTGDMSQVKVVRAHAQALAQCQRWLNTN YPNLPREAVSSNAEAARMAGEDETVAALASVQAANRYGLHVVRANVEDDPHNRTRFVV IGNYETEPSGRDQTSLILSVPNEAGAVYKLLAPLAENGVSMCRFESRPARSGAWEYYF YVDVEGHQRDPQVARALEKLRHDAAYFKVLGSYPSAH" gene 820893..822017 /locus_tag="Rpic_0775" /db_xref="GeneID:6286919" CDS 820893..822017 /locus_tag="Rpic_0775" /note="catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis" /codon_start=1 /transl_table=11 /product="histidinol-phosphate aminotransferase" /protein_id="YP_001898358.1" /db_xref="GI:187927871" /db_xref="InterPro:IPR001917" /db_xref="InterPro:IPR004839" /db_xref="InterPro:IPR005861" /db_xref="GeneID:6286919" /translation="MSLQFGPEYVRAIAPYVAGKPISEVAREFGLDAARIVKLASNEN PLGMPKSAKNAMASAINELARYPDANGFSLKAALHAKFGVPETWITLGNGSNDILELA ARALVSPGQAVMYAQHSFAVYALAAQEVGARAIEVPARDYGHDLDAMAAAITPDTRLI YIANPNNPTGTFLPADAIAAFLAKVPPTVVVVLDEAYNEFLKPEQQYDSTAWVRQYPN LLVSRTFSKAYGLAGLRVGYGIAQPQLTDLLNRIRQPFNVNSLAQAAAVAALNDAEFL CQSAELNAAGYVQLTDAFDRLGLEYVPSSGNFVLVRVGDDNGAGARVNVALLKQGVIV RPVGNYGLPQWLRISIGLPEENATFIGALESALAREKAAA" gene 822115..823023 /locus_tag="Rpic_0776" /db_xref="GeneID:6286920" CDS 822115..823023 /locus_tag="Rpic_0776" /EC_number="1.3.1.12" /note="PFAM: Prephenate dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; KEGG: rso:RSc0906 putative prephenate dehydrogenase oxidoreductase protein" /codon_start=1 /transl_table=11 /product="Prephenate dehydrogenase" /protein_id="YP_001898359.1" /db_xref="GI:187927872" /db_xref="InterPro:IPR003099" /db_xref="InterPro:IPR004455" /db_xref="GeneID:6286920" /translation="MASSFSSSRLVIVGVGLIGGSLALGLRRAGVVEHVVGVGRSAAS LETAIRLGVIDEALPMEEAVRGADMVVLCAPVAQTLPLLLAMQPHLGPDTIVTDAGST KSDVIMAAKTALGDQVSQFVPAHPIAGRELNGVEAALADLYVGKKTVLCPLQENRRSD VARVQAMWEAAGAHCHIMSAVQHDAVFAAVSHLPHVLSYALVAQIINAEDGALKLDFA GGGFRDFTRIAASSPEMWRDICLSNREALLRELTTYEAVIGRLKTMIAERDGDALERV FRRASEARLAWPQRVAPGNAAGAQSE" gene 823050..824354 /locus_tag="Rpic_0777" /db_xref="GeneID:6286921" CDS 823050..824354 /locus_tag="Rpic_0777" /note="catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis" /codon_start=1 /transl_table=11 /product="3-phosphoshikimate 1-carboxyvinyltransferase" /protein_id="YP_001898360.1" /db_xref="GI:187927873" /db_xref="InterPro:IPR001986" /db_xref="InterPro:IPR006264" /db_xref="GeneID:6286921" /translation="MEHLDVGPLKTARGTIKLPGSKSISNRVLLLAALAQGETVVRDL LDSDDTRVMLDALGKLGVSVEGQGENAYRVTGTGGRFPNTSADLFMGNAGTAIRPLTA ALALQGGEYTLHGVPRMHERPIGDLVDGLRQVGARIDYTGNEGYPPLAIHAAPVKIDA PIRVRGDVSSQFLTALLMALPLVESAGNVTIEVVGELISKPYIEITLNLMARFGVQVA RDGWSSFTVPTGVAYTAPGEIFVEGDASSASYFLAAGALGGGPVRVEGVGMSSIQGDV RFADALNRMGANVMAGGNWIEVRGAERDDGKLHAVELDCNHIPDAAMTLAVAALFADG TTTLTNIASWRVKETDRLSAMATELRKLGAEVEEGADYIRVTPPSQWTPPAGGIDTYD DHRMAMAFSLAAFGPVPVRINDPRCVAKTFPEYFTAFGGITA" gene 824382..825077 /gene="cmk" /locus_tag="Rpic_0778" /db_xref="GeneID:6286817" CDS 824382..825077 /gene="cmk" /locus_tag="Rpic_0778" /EC_number="2.7.4.14" /note="Catalyzes the formation of (d)CDP from ATP and (d)CMP" /codon_start=1 /transl_table=11 /product="cytidylate kinase" /protein_id="YP_001898361.1" /db_xref="GI:187927874" /db_xref="InterPro:IPR003136" /db_xref="InterPro:IPR011769" /db_xref="InterPro:IPR011994" /db_xref="GeneID:6286817" /translation="MSDTAASMPYPVITIDGPTASGKGTVAHQIADLLGFHLLDSGSL YRLVALASMRENIDDHDVESLVRIARELDVRFKADRIWLKGEDVSLALRHESVGNQAS AIAVHGAVREALHARQRAFLEAPGLVADGRDMGTVVFPEAVLKVFLTASVQARAERRY KQLIAKGFSATVESLSQDLEARDLRDRTRSVAPLRPAQDARQLDSSDMTVDEVVAQVL DWYRQVQGANKAN" gene 825213..826901 /gene="rpsA" /locus_tag="Rpic_0779" /db_xref="GeneID:6286818" CDS 825213..826901 /gene="rpsA" /locus_tag="Rpic_0779" /note="in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S1" /protein_id="YP_001898362.1" /db_xref="GI:187927875" /db_xref="InterPro:IPR000110" /db_xref="InterPro:IPR003029" /db_xref="GeneID:6286818" /translation="MSQTNESFAALFEESIAKSNMKAGEVISAEVVRIDHNFVVVNAG LKSEAFVPVEEFLNDQGELEVQVGDYVSVAIDALENGYGDTILSRDKAKRLASWLNLE KALESGEIISGTVTGKVKGGLTVMVNGIRAFLPGSLVDVRPIKDTTPYEGKTLEFKVI KLDRKRNNVVLSRRAVVEATLGEERQKLMETLKEGAIVNGIVKNITDYGAFVDLGGID GLLHITDLAWRRVRHPSEVLSVGQEITAKILKFDQEKNRVSLGVKQLGEDPWVGISRR YPQGTRLFGKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVM VLDIDEDKRRISLGMKQCKANPWDDFARNQKKGDKLAGQIKSITDFGVFIGLPGGIDG LVHLSDLSWQETGEEAVRKYKKGDEVEAVVLAIDVDKERISLGIKQLSGDPFNNFIST NDKGSIVQVTIKAVDPKGAVVQLADDVEGYLRASEISSDRVEDARNVLKEGETMTAMI VNIDRKSRNINVSIKAKDSADQQEAMQKFSADTGAAGTTNLGALLKAKLNETNQ" gene 826947..827375 /gene="ihfB" /locus_tag="Rpic_0780" /db_xref="GeneID:6286819" CDS 826947..827375 /gene="ihfB" /locus_tag="Rpic_0780" /note="This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control" /codon_start=1 /transl_table=11 /product="integration host factor subunit beta" /protein_id="YP_001898363.1" /db_xref="GI:187927876" /db_xref="InterPro:IPR000119" /db_xref="InterPro:IPR005685" /db_xref="GeneID:6286819" /translation="MPMTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHR IEIRGFGSFGLNRRPPRVGRNPKSGEKVLVPEKRVPHFKAGKELRERVDRSLERQGEP SSEGESAVSLAAVKAARQVDSSRQAAGFPVDTAVPLAMSR" gene 827558..827881 /locus_tag="Rpic_0781" /db_xref="GeneID:6286820" CDS 827558..827881 /locus_tag="Rpic_0781" /note="KEGG: rso:RSc0911 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001898364.1" /db_xref="GI:187927877" /db_xref="GeneID:6286820" /translation="MKFLVWVIRILLFVLLFVLALHNTAEVSLVLPFGVVWHAPLILI ALAFFVAGILLAMLAMAPRVMRHRFTASRLRRQIGRMKKAEEVTEVPTPVVADSPYHV PGPKV" sig_peptide 827558..827635 /locus_tag="Rpic_0781" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.870) with cleavage site probability 0.579 at residue 26" gene 827885..829159 /locus_tag="Rpic_0782" /db_xref="GeneID:6286835" CDS 827885..829159 /locus_tag="Rpic_0782" /note="PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: rso:RSc0912 hypothetical protein" /codon_start=1 /transl_table=11 /product="tetratricopeptide repeat protein" /protein_id="YP_001898365.1" /db_xref="GI:187927878" /db_xref="InterPro:IPR001440" /db_xref="InterPro:IPR013026" /db_xref="InterPro:IPR013105" /db_xref="GeneID:6286835" /translation="MDFDLWWLLAIPLVFGLGWAAARLDARQLRTEQSSLPRSYFKGL NFLLNEQPDKAIDAFIEVARLDPETTELHFALGSLFRRRGETERAIRVHQNLVNRPDL PPNERDHALFELGQDFLRAGLLDRAEESLRMLMEGTFAEPAKRVLLELYEVEKEWRKA IEAARELQKLQGKDYAVQIAQFCCEVAQEALQRKDVPTAIEWLERALQENPKNVRATI QLGDVSQGQGDVEGAIKRWRSIEQQNTAFLPLVAERLMKAYTQLGRAAEGLAWLRSKM DARLGPELLDTVYKYELDVHGIDDAVALMRDQIRRQPSLVALTRLVEAEATRASEAVG HEAPATADVAESALADPVEAGSNADIQRAQDLGAIRDLLQSRTRNLARYTCQECGFRA RLFYWQCPGCNRWETYAPRRTETLGGSGGASM" gene 829226..830590 /locus_tag="Rpic_0783" /db_xref="GeneID:6286836" CDS 829226..830590 /locus_tag="Rpic_0783" /EC_number="1.1.1.22" /note="KEGG: rso:RSc0913 probable UDP-glucose 6-dehydrogenase (UDG) oxidoreductase protein; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; Ketopantoate reductase ApbA/PanE domain protein; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase" /codon_start=1 /transl_table=11 /product="nucleotide sugar dehydrogenase" /protein_id="YP_001898366.1" /db_xref="GI:187927879" /db_xref="InterPro:IPR001732" /db_xref="InterPro:IPR013332" /db_xref="InterPro:IPR014026" /db_xref="InterPro:IPR014027" /db_xref="GeneID:6286836" /translation="MKITIIGSGYVGLVTGACLAELGNDVFCLDVDQKKIDLLNAGGV PIYEPGLKELIERNRAAGRIQFSTDVAASVAHGDVQFIAVGTPPDEDGSADLKYVLAA ARNIAQHMTGFKVIVDKSTVPVGTGDKVRAAVGEVLATRGKSDIGFSVVSNPEFLKEG AAVDDFMRPDRIVLGTYGDNNGLRAKAIMRTLYAPFNRNHERTFYMDVRSAEFTKYAA NSMLATRISFMNEMANLADKVGADIELVRLGIGSDPRIGYSFLYAGTGYGGSCFPKDV QALVRTAQEYGQTLHVLEAVEAVNDKQKEVLVGKIEDRMGADLTGRTFAIWGLAFKPN TDDMREAPSRNLIAALLARGARVQVYDPVAMEEARHALGLDLSSEQLERVAFCAGQMD ALKDADALVIVTEWKAFRSPDFNAVKALLKTPMVFDGRNLFEPQAMRDAGFEYQAIGR STQS" sig_peptide 829226..829288 /locus_tag="Rpic_0783" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.856) with cleavage site probability 0.836 at residue 21" gene 830627..831559 /locus_tag="Rpic_0784" /db_xref="GeneID:6286837" CDS 830627..831559 /locus_tag="Rpic_0784" /note="TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: rso:RSc0914 probable ADP-heptose synthase protein" /codon_start=1 /transl_table=11 /product="rfaE bifunctional protein" /protein_id="YP_001898367.1" /db_xref="GI:187927880" /db_xref="InterPro:IPR002173" /db_xref="InterPro:IPR011611" /db_xref="InterPro:IPR011913" /db_xref="GeneID:6286837" /translation="MTTLASEQIHAARILVVGDMMLDRYWFGDVDRISPEAPVPVVQI KRQDERLGGAANVARNVAALGAQAAMLGVVGDDEPGRSIETLLGESHVTGHLHRDPAV NTTIKLRVLARQQQLIRVDFENAPTHEVLMSVLDRFATLVPQHDVVVLSDYGKGGLTH VGKMIEASRQAGRRVLVDPKGDDYSRYRGATMITPNRAEMRQVVGSWKSEQDLTIRAQ NLRRELQLEALLLTRSEEGMTLYTEHEVLHVSAQAREVFDVSGAGDTVIATLATLLGA GANIKEAVQYANRAGGIVVGKLGTAVVTHAELFN" gene 831578..832573 /locus_tag="Rpic_0785" /db_xref="GeneID:6286838" CDS 831578..832573 /locus_tag="Rpic_0785" /note="TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rso:RSc0915 probable ADP-L-glycero-D-manno-heptose-6-epimerase protein" /codon_start=1 /transl_table=11 /product="ADP-L-glycero-D-manno-heptose-6-epimerase" /protein_id="YP_001898368.1" /db_xref="GI:187927881" /db_xref="InterPro:IPR001509" /db_xref="InterPro:IPR002225" /db_xref="InterPro:IPR005913" /db_xref="InterPro:IPR011912" /db_xref="InterPro:IPR013120" /db_xref="GeneID:6286838" /translation="MTIIVTGAAGFIGANIVKGLNERGETDIIAVDNLTRADKFKNIV DCQISDYLDKTDFVERFARGEFGKVRAIFHEGACSDTMETDGRYMMDNNYRYSLAVMR ACLDQGVQFLYASSAATYGASETFREEPEFERPLNVYGYSKLLFDQVVRRVMLTALSQ IVGFRYFNVYGPREQHKGRMASVAFHNFNQFRSEGTVKLFGEYNGYPQGGQMRDFVSV EDVVKVNLFFFDNPDKSGIFNLGTGRAQPFNDIATTVMNTLRGAEGKPALSTEELAQE GLIEYVKFPDALRGKYQCFTQADQSRLRAAGYTAPFLTVQEGVERYCQWLLKQPV" gene 832711..833034 /locus_tag="Rpic_0786" /db_xref="GeneID:6286486" CDS 832711..833034 /locus_tag="Rpic_0786" /note="KEGG: rso:RSc0916 putative ComEA-related signal peptide protein" /codon_start=1 /transl_table=11 /product="putative ComEA-related signal peptide protein" /protein_id="YP_001898369.1" /db_xref="GI:187927882" /db_xref="GeneID:6286486" /translation="MLKKLLAAALMSLSMLSVSWAAVDVNTADHAALETLSGIGPKRS KSIIEERTKNGPYKDAADFKARVSGIGGKTLAKLENEGLTFGAAAPAPAPAAAKKDGK DAKKK" sig_peptide 832711..832776 /locus_tag="Rpic_0786" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 22" gene 833147..834049 /gene="cysM" /locus_tag="Rpic_0787" /db_xref="GeneID:6286487" CDS 833147..834049 /gene="cysM" /locus_tag="Rpic_0787" /note="catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide" /codon_start=1 /transl_table=11 /product="cysteine synthase B" /protein_id="YP_001898370.1" /db_xref="GI:187927883" /db_xref="InterPro:IPR001216" /db_xref="InterPro:IPR001926" /db_xref="InterPro:IPR005856" /db_xref="InterPro:IPR005858" /db_xref="GeneID:6286487" /translation="MAYLTIEDTIGNTPLVQLQRIPGEGNARRGNVILGKLEGNNPAG SVKDRPALSMIKHAEARGRIKPGDTLIESTSGNTGIALAMAAAVRGYKMVLIMPEDLS VERRQSMAAYGAEIILTPVKGGMEYARDLADAMEKEGKGVILDQFANPDNPLAHYETT GPELWRDTEGRITHFVSAMGTTGTITGVSRFLKEKNADIQIVGAQPEEGSRIPGIRKW PEAYMPKIYDPKYIDRTEAVSQSDAEHMARRMAREEGIFCGISAAGALCVALRVAEEV ENATIAFVVCDRGDRYLSTGVFPA" gene complement(834117..835241) /locus_tag="Rpic_0788" /db_xref="GeneID:6286488" CDS complement(834117..835241) /locus_tag="Rpic_0788" /note="TIGRFAM: lytic murein transglycosylase B; KEGG: rso:RSc0918 putative membrane-bound lytic murein transglycosylase B protein" /codon_start=1 /transl_table=11 /product="lytic murein transglycosylase B" /protein_id="YP_001898371.1" /db_xref="GI:187927884" /db_xref="InterPro:IPR011757" /db_xref="GeneID:6286488" /translation="MSQSPSSRRPVLRALVAGAALSALSFPALSLAAKKTAKSPKRRV AVHEEEIDPDRYRNNPQTQAFIGMLVAQYNFDRTSLETLFAGTAYSATVARLILPPAT PARRSWTAYRGRFIEPIRIGAGVRFWQQYGDTLRRAENEFGVPADVIVGILGVETIYG RDMGNFRVMDALSTLAFDYPDTPNREDRSTMFRNQLKDFLLWCRDTGTETFSVLGSYA GAVGIPQFMPTSIREYAIDYDHDGHIDLRNSAVDAIGSVARFLQMHGWEPNRPVMWNI AGDADSQGIAAAAADGQPYPGMTLSRLTRAGLALAPGVDTAREQETEVLMIDLPTPGQ PTEYRVGLRNFYVLTRYNRSFFYAAAVYELGQAVRQAMQG" sig_peptide complement(834117..834215) /locus_tag="Rpic_0788" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.958 at residue 33" gene 835373..836296 /locus_tag="Rpic_0789" /db_xref="GeneID:6286489" CDS 835373..836296 /locus_tag="Rpic_0789" /note="PFAM: histone deacetylase superfamily; KEGG: rso:RSc0919 hypothetical protein" /codon_start=1 /transl_table=11 /product="histone deacetylase superfamily" /protein_id="YP_001898372.1" /db_xref="GI:187927885" /db_xref="InterPro:IPR000286" /db_xref="GeneID:6286489" /translation="MATGLYTHPEFLRHEMGPHHPECPDRLRAIEDQLIASRIDDLLV PCEAPPATEAQLCRVHRAEYVRELVASVPIAGYMPIDPDTSMNPHTYMAAVLAAGAAV DATDKVIAGELENAFCSVRPPGHHAEPGRAMGFCFFNNVAVAARHALDHHGLQRVAIV DFDVHHGNGTEAAFRDEPRVLMCSIFQHPFYPYSGTEPVAANMVNIPLPAYTNGLTVR EVVETIWLPRLEAFQPEMLFISAGFDAHREDDLGQMGLVEADYTWITQQLMQVARTHA KGRIVSCLEGGYNLSALGRSVVAHVKALAEL" gene 836460..837509 /gene="metN" /locus_tag="Rpic_0790" /db_xref="GeneID:6288198" CDS 836460..837509 /gene="metN" /locus_tag="Rpic_0790" /note="PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc0920 probable ATP-binding ABC transporter protein" /codon_start=1 /transl_table=11 /product="ABC transporter related" /protein_id="YP_001898373.1" /db_xref="GI:187927886" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:6288198" /translation="MIELKGISQHFRGAGDHDVHALRDVDLTINRGEIFGIIGRSGAG KSTLVRVINLLNRPTSGTVTVAGQELTALNADGLRQARRKIGMIFQHFNLLSSRTVYD NVALPLELAGTSRERIREIVLPLLELVGLSAHKDRYPAQISGGQKQRVGIARALASQP DVLLSDEATSALDPETTRSILDLLRKINRELGLTIVLITHQMEVIKQVCDRVAVLDAG RVVELGRVIDVFLQPKHDVTRALIGEVISQELPPSVLARVESRLTAREQGGRDHLFRL AFTGAGVDQPVLAQAIRNYGLDFNILHGHIDEIQGQAFGSLAILASGETADINNAMNF LREQGVVVEEINHVV" gene 837499..838152 /locus_tag="Rpic_0791" /db_xref="GeneID:6288199" CDS 837499..838152 /locus_tag="Rpic_0791" /note="PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc0921 probable transmembrane ABC transporter protein" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="YP_001898374.1" /db_xref="GI:187927887" /db_xref="InterPro:IPR000515" /db_xref="GeneID:6288199" /translation="MWSDLTDLFLPAFWETLAMVGVSGGIGALFGVPLGVLLYLTTTG GVLSAPVFNRVAGLVVNAVRSVPFIILLVAVIPFTRLLAGSSIGTAAAIVPLTIAAIP FVARLVETALREVDRGLIEAAQSMGATTGQLVYKVLLPEAMPGILAGLTITFVSLVGY SAMAGTIGGGGLGDLGIRYGYQRYESDIMLAVVVILIVFVQAVQSTGDWLVRRLSHR" gene 838186..838986 /locus_tag="Rpic_0792" /db_xref="GeneID:6288200" CDS 838186..838986 /locus_tag="Rpic_0792" /note="TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: rso:RSc0922 probable signal peptide protein" /codon_start=1 /transl_table=11 /product="lipoprotein, YaeC family" /protein_id="YP_001898375.1" /db_xref="GI:187927888" /db_xref="InterPro:IPR004478" /db_xref="InterPro:IPR004872" /db_xref="InterPro:IPR006311" /db_xref="GeneID:6288200" /translation="MNRRQLLQWSASLGAALALVAGSALAQSKPIKIGVTAGPHAEIM EEVKKVAEKDGLKLQIVEFNDYIQPNAALAAGDLDANSYQHQPYLDDQIATRGYKFVS VGQTITFPMGIYSKKIKSLKELKDGARFGLPNDPTNGGRALLLLQSQGVIKLKPNAGF KASPRDVADNPKKLKFVELDAAQLPRSLDDLDAAAINGNYAEKANLDPTKDGIAIESP KGPYANVIAIRAADKDQPWVAKLVKAYHSDAVKSFVKAKYKDAVIVAW" sig_peptide 838186..838266 /locus_tag="Rpic_0792" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.992 at residue 27" gene 839177..839926 /locus_tag="Rpic_0793" /db_xref="GeneID:6288201" CDS 839177..839926 /locus_tag="Rpic_0793" /note="PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: rso:RSc0923 probable electron transfer flavoprotein (beta-subunit)" /codon_start=1 /transl_table=11 /product="Electron transfer flavoprotein alpha/beta-subunit" /protein_id="YP_001898376.1" /db_xref="GI:187927889" /db_xref="InterPro:IPR000049" /db_xref="InterPro:IPR014730" /db_xref="GeneID:6288201" /translation="MKVLVAVKRVIDYNVKVRVKTDGSGVDLANVKMSMNPFDEIAVE EAVRLKEAGVATEVIAVSCGVTQCQETLRTAMAIGADRGILVETAEELQPLAVAKLLK ALVDKEQPQLIILGKQAIDDDANQTGQMLAALAGLPQATFASKVQIADGKASVTREVD GGLETLSVKLPAVVTTDLRLNEPRYVTLPNIMKAKKKQLDTVKPEDLGVDVAPRLKTL KVVEPAKRSAGVMVPDVATLVAKLKTEAKVL" gene 839978..840913 /locus_tag="Rpic_0794" /db_xref="GeneID:6288747" CDS 839978..840913 /locus_tag="Rpic_0794" /note="PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: rso:RSc0924 probable electron transfer flavoprotein (alpha-subunit)" /codon_start=1 /transl_table=11 /product="Electron transfer flavoprotein alpha subunit" /protein_id="YP_001898377.1" /db_xref="GI:187927890" /db_xref="InterPro:IPR014730" /db_xref="InterPro:IPR014731" /db_xref="GeneID:6288747" /translation="MTSLVIAEHDNQTIKAATLNTVTAAAQCGGDVHVLVAGAGCGAA AQAAAQIAGVAKVLVADAPQFADGLAENVAEQALAIAGNYSHILAPATAYGKNILPRV AAKLDVAQLSDITKVDGPDTFERPIYAGNAIATVQSADKVKVITVRGTAFDPAAATGG SAATENLTAVADTGISQFVSREVTKSDRPELTAAKIIVSGGRGVGSGENYTKVLTPLA DKLGAALGASRAAVDAGFVPNDYQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVI VAINKDPEAPIFQVADYGLVGDLNAVVPELVAALG" gene 841082..842866 /locus_tag="Rpic_0795" /db_xref="GeneID:6288748" CDS 841082..842866 /locus_tag="Rpic_0795" /note="PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RSc0925 putative acyl-CoA dehydrogenase oxidoreductase protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain protein" /protein_id="YP_001898378.1" /db_xref="GI:187927891" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR013107" /db_xref="GeneID:6288748" /translation="MTYQAPVKDMLFVMNELAGLDNVAKLPGFEDATADTAQAVLEES ARFTGEVVAPLNVEGDRNPSSWKDGVVTATAGFKEAFAQFGQGGWQGVQHPLEYGGQG LPKLIATACIEMLNAANLSFALCPLLTDGAIEALLTAGTEEQKQLFVPKLISGEWTGT MNLTEPQAGSDLALVRTRAEPVGDGTFKIFGTKIFITWGEHDMAENIVHLVLARTPGA PEGVKGISLFVVPKFMVNEDGSLGARNDAHCVSIEHKLGIKASPTAVLQFGDNGGAIG TLVGEENRGLEYMFIMMNAARYAVGMQGIGVSERAYQKAVAYARDRVQSRPVDGSAAK AVPIIHHPDVKRMLLTMRAMTEGARALAYVAAAACDAGHHAADDAARKQNAALYEFLV PIVKGWSTEMSIDVTSLGVQVHGGMGFIEETGAAQFYRDARILPIYEGTTAIQANDLI GRKTVRDGGAVASGICAEIAKVEAALAAKGGAHCDAMRARLAAGREALESVVRFVVAQ TKAQPNAVFAGSVPYLRLCGIVLSGWQMARALLVAIDRESEDPNFYGAKIATARVFAD VLLTQAPGIAQSVLTGGETIGAVPEVLF" gene complement(842935..844224) /locus_tag="Rpic_0796" /db_xref="GeneID:6288749" CDS complement(842935..844224) /locus_tag="Rpic_0796" /EC_number="1.4.99.1" /note="catalyzes the oxidative deamination of D-amino acids" /codon_start=1 /transl_table=11 /product="D-amino acid dehydrogenase small subunit" /protein_id="YP_001898379.1" /db_xref="GI:187927892" /db_xref="InterPro:IPR001327" /db_xref="InterPro:IPR006076" /db_xref="GeneID:6288749" /translation="MRVLVLGSGVIGVTSAYYLARAGHEVTVVDREAGPALETSFANA GQISPGYASPWAAPGVPLKAIKWMFQQHAPLSIRPDGTLFQLKWMWQMLRNCDAASYA QNKERMVRLAEYSRDCIRDLRADTGIAYEGRQQGTLQIFRTQQQLDGAANDIAVLERA GVPYELLSREDLVRSEPGLASTRHKLAGGLRLPNDETGDCQLFTTRLAAMAEKLGVRF RFNSTINSLIFKNDAVRGALVDGQPIDADLVVVALGSYSTPFLKNLVNVPVYPLKGFS ITVPMTDAGKSPVSTILDETYKVAVTRFDDRIRVGGMAQIVGYDKRLDPGKRKTLEFV VNDLFPGAGDVSRATFWTGLRPMTPDGTPIVGQTPVRGLWLNTGHGTLGWTMACGSGK LLSDLVSGRSPAIRSDDLSVYRYLGGTQMPATKPALA" gene 844347..844844 /locus_tag="Rpic_0797" /db_xref="GeneID:6288750" CDS 844347..844844 /locus_tag="Rpic_0797" /note="PFAM: regulatory protein AsnC/Lrp family; KEGG: rso:RSc0927 probable leucine-responsive regulatory DNA-binding transcription regulator protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AsnC family" /protein_id="YP_001898380.1" /db_xref="GI:187927893" /db_xref="InterPro:IPR000485" /db_xref="GeneID:6288750" /translation="MRTQRKPVRALDKLDRRILDLLQKDGRLSMKELSEAVGLTITPC IERVKRLEREGFILGYYARLNPAMLGASLLVFVEISLGSKSGNMFEQFRREVLRIPEV LECHLVSGDFDYLIKARIREMSEYRRLLGDILLQLPGAVQSKSYIVMEEIKETLAIDV TEAGG" gene 844909..846528 /locus_tag="Rpic_0798" /db_xref="GeneID:6286444" CDS 844909..846528 /locus_tag="Rpic_0798" /EC_number="3.1.3.1" /note="KEGG: vei:Veis_2978 alkaline phosphatase" /codon_start=1 /transl_table=11 /product="Alkaline phosphatase" /protein_id="YP_001898381.1" /db_xref="GI:187927894" /db_xref="GeneID:6286444" /translation="MSDQPIFKPTRRTLIKGLVSASGTALLSSRIGDVLAQGAAPAAM TSERLRPQVPGGVMSGDITAGSAIVWSRTDRPARMIVEYSTDAAFKNVARRIGPAALE SNGLTARVDLNGLPAGADLFYRVRFQDLVHDKAFSEPVAGRFRTAPMQANRPICFVFS GDEAGQGWGINERFGGYRLYEAMRRESPDFFIHSGDQIYADGPIQAEVKLPDGALWTN LVTEAKSHVAQTLDDYRGAFAYNQLDKNKRAFSAEVPFLVQWDDHEVRNNWYPGQQIG PEEKRYQERSASLLAARAKQAMFEYNPFRFNPIDPEQIYRAFQYGPLLDVFMLDERSY RGRNSPNRQTRLDADSAFLGPAQAAWLKQSLKQSKATWKVIASDMPISLVVPDLNPDV PKGTYEAWANADDGMPSGRELELAEILRFIKQENIQNVVWVTADVHYAQATYYHPSRA KFTDFKPFWEFVGGPINAGTFGPNEVDQTFGPDVRYVSIPKDNPQNQSPAALQQYYGR AKIDPITRTMHVSLHDLDGKSLWEVKLDPEA" sig_peptide 844909..845019 /locus_tag="Rpic_0798" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.705) with cleavage site probability 0.627 at residue 37" gene 846611..847735 /locus_tag="Rpic_0799" /db_xref="GeneID:6286445" CDS 846611..847735 /locus_tag="Rpic_0799" /note="PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rso:RSc0928 hypothetical protein" /codon_start=1 /transl_table=11 /product="Radical SAM domain protein" /protein_id="YP_001898382.1" /db_xref="GI:187927895" /db_xref="InterPro:IPR002787" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="GeneID:6286445" /translation="MSDRHVPRKGRGATSNLQGRFERDERTRVDDGWQPLVGHLDPDD APPRIETSVSIERARSILSHNQSPDIPFGVSLNPYRGCEHGCVYCFARPTHAYLELSP GLDFETKLFAKTNAAEVLRETLAKPGYRCEAIALGVNTDAYQPIERELHITRDVLQVL HDCDHPVGLITKSTLIERDIDLLAPMAAKNLVVAAVTITTLDADLARKLEPRAATPSR RLRTIRTLAEAGIPVGVSVAPMVPFITDDHMEQILEAAHEAGATYASYIVLRLPNELD AVFQDWLMAHFPDRAQRVMNRIRDLHGGHDYKADFATRMRGTGIWADLLRQRFYKAAD RLGFSYHRYNERVLDTSQFKPPTRALKPRKPVDERQGSLF" gene complement(847736..848191) /locus_tag="Rpic_0800" /db_xref="GeneID:6286446" CDS complement(847736..848191) /locus_tag="Rpic_0800" /note="KEGG: rso:RSc0929 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001898383.1" /db_xref="GI:187927896" /db_xref="GeneID:6286446" /translation="MPTTTLQKKSKLLTVLLAFLFGSVGAHRFYLKGGRDFWAWSQVF AMVLGVVGVALLWSTQRASVPGWVCAMIGGSSVLAGYLSALVYGLRPDDKWDAQFNAD GTPTHSGWPVVLLSVLTLMIGTGLLMAGLAITFQTYFETQVQAAKELSQ" sig_peptide complement(847736..847816) /locus_tag="Rpic_0800" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.997 at residue 27" gene complement(848382..848555) /locus_tag="Rpic_0801" /db_xref="GeneID:6286447" CDS complement(848382..848555) /locus_tag="Rpic_0801" /note="KEGG: rso:RSc0930 probable transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_001898384.1" /db_xref="GI:187927897" /db_xref="GeneID:6286447" /translation="MSFPRRRHVRLILGLVWTTAFMLMLAHLLYGVRDQTPRLQQDST VSMSVPSLRPVPI" sig_peptide complement(848382..848477) /locus_tag="Rpic_0801" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.750) with cleavage site probability 0.589 at residue 32" gene complement(848680..849069) /locus_tag="Rpic_0802" /db_xref="GeneID:6287995" CDS complement(848680..849069) /locus_tag="Rpic_0802" /note="KEGG: rso:RSc0931 probable signal peptide protein" /codon_start=1 /transl_table=11 /product="putative signal peptide protein" /protein_id="YP_001898385.1" /db_xref="GI:187927898" /db_xref="GeneID:6287995" /translation="MPIRALLRPLAAGVLIVASAGAVAANASARQTAVAFAESTMPAW TQAAQTMPQERPLVAQFFADSRGEQAARIRAQMERMEARARADDRLNGRIQPRDGGGR GDWQQQERMRQERGNGDQGNWHGSRRG" sig_peptide complement(848680..848754) /locus_tag="Rpic_0802" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.576 at residue 25" gene complement(849263..850312) /locus_tag="Rpic_0803" /pseudo /db_xref="GeneID:6287996" gene 850482..850736 /gene="rpsP" /locus_tag="Rpic_0804" /db_xref="GeneID:6287997" CDS 850482..850736 /gene="rpsP" /locus_tag="Rpic_0804" /note="binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S16" /protein_id="YP_001898386.1" /db_xref="GI:187927899" /db_xref="InterPro:IPR000307" /db_xref="GeneID:6287997" /translation="MVVIRLARGGSKKRPFFNIVATDSRNRRDGRFIERVGFYNPLAG EGEEGLRIVQDRLTYWEGVGAQLSPTVARLVKQGAKKAAA" gene 850870..851424 /gene="rimM" /locus_tag="Rpic_0805" /db_xref="GeneID:6287998" CDS 850870..851424 /gene="rimM" /locus_tag="Rpic_0805" /note="Essential for efficient processing of 16S rRNA" /codon_start=1 /transl_table=11 /product="16S rRNA-processing protein RimM" /protein_id="YP_001898387.1" /db_xref="GI:187927900" /db_xref="InterPro:IPR002676" /db_xref="InterPro:IPR007903" /db_xref="InterPro:IPR011961" /db_xref="GeneID:6287998" /translation="MRPGTGTNPTLPDDLVEVGYVGGAYGIRGWIKVQLHGDADALLN ARTWWLKPAAGALATSADWRVFPVGTSREHSGTVVAGSPAAPDRNVAEALRGYAVWVS RADFPEPDDDEFYWVDLIGATVVNEQQETLGTVRGLIDNGAHQILRIVGEGEVERLVP FVEVYVKSVDVAGKRIVVDWGLDY" gene 851448..852236 /gene="trmD" /locus_tag="Rpic_0806" /db_xref="GeneID:6288469" CDS 851448..852236 /gene="trmD" /locus_tag="Rpic_0806" /EC_number="2.1.1.31" /note="methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA" /codon_start=1 /transl_table=11 /product="tRNA (guanine-N(1)-)-methyltransferase" /protein_id="YP_001898388.1" /db_xref="GI:187927901" /db_xref="InterPro:IPR002649" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR016009" /db_xref="GeneID:6288469" /translation="MQFDVVSLFPDMFRALTDWGITSRAAKQQVYTLRTWNPRDFTTD NYRTVDDRPYGGGPGMVMLAKPLEAALDAIQAAQAPAASHVVLLSPQGKPLTHKRVME LAQLPALTLLCGRYEAIDQRLVDRRVDEEISLGDFVLSGGEIAAMAIIDAVVRQLPGV LGDAQSAVQDSFVNGLLDCPHYTRPEEYESVRVPDVLLGGHHAEIEKWRRQQALVNTM RKRPDLIEAARKQGLLSRSDEVFLAAAAITAKGSEPSIPEGSAK" gene 852310..852696 /gene="rplS" /locus_tag="Rpic_0807" /db_xref="GeneID:6288470" CDS 852310..852696 /gene="rplS" /locus_tag="Rpic_0807" /note="this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L19" /protein_id="YP_001898389.1" /db_xref="GI:187927902" /db_xref="InterPro:IPR001857" /db_xref="GeneID:6288470" /translation="MNLIEQIEQEEIKRLTANKTIPPFAPGDTVIVNVNVVEGTRKRV QAYEGVVIAKRNRGLNSSFIVRKISSGEGVERTFQLYSPLLASIEVKRRGDVRRAKLY YLRQRSGKSARIKEKLTFKRKEAAAE" gene 852803..853507 /locus_tag="Rpic_0808" /db_xref="GeneID:6288471" CDS 852803..853507 /locus_tag="Rpic_0808" /note="PFAM: NUDIX hydrolase; KEGG: rso:RSc0937 hypothetical protein" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase" /protein_id="YP_001898390.1" /db_xref="GI:187927903" /db_xref="InterPro:IPR000086" /db_xref="GeneID:6288471" /translation="MRRPVFDPEQLPVVPTEASLPALGLPRLTAEFVRERLQTQPDWQ PEQTDESRLIDASLKLREAAVLVPLVQREAGLTVLLTQRNASLSQHAGQVSFPGGGRE EFDRDMVDTALRETMEEVGISAEHIEVIGRLPDYITGTGFHVSPIVGLLAPDFTLQPD PSEVAEVFEVPLAFLMDPANHEVRELRWEDRVRRFYAMPYRRSGRSDQAPDSGHHFIW GATAGMLRNLYHLLAA" gene 853615..854556 /locus_tag="Rpic_0809" /db_xref="GeneID:6288472" CDS 853615..854556 /locus_tag="Rpic_0809" /note="PFAM: cobalamin biosynthesis protein CbiB; KEGG: rso:RSc0938 adenosylcobinamide-phosphate synthase" /codon_start=1 /transl_table=11 /product="CobD/CbiB family protein" /protein_id="YP_001898391.1" /db_xref="GI:187927904" /db_xref="InterPro:IPR002332" /db_xref="InterPro:IPR004485" /db_xref="GeneID:6288472" /translation="MTFFSVLCALILEQFRALSRDNPIYDVVRALAARAEEWFDTGLR RDAVLAWCVVTLPAVVVVALVHYLLSSISLGLAFLWNVLMVYLTLGFRQFSHYFTDIH EALRSDDVVTARLLLNEWSGQDTTDMPVNEIVRHTLECAIVAAHRHVFGVFFWFLVPI GPAGVVLYRGAEYLARHWSDTSTERSPALGLFARQAFFIIDYVPARLTAIGFSIVGNF EDAVYAWRNRAAKWNDEVNGILLAAGGGALGVRLGTPIPQRDSADSIADEDGAYPMEV GQEPNVRTLQSAVGLVWRAVVLWMLLLAMLSIAVWLG" gene complement(854589..854903) /locus_tag="Rpic_0810" /db_xref="GeneID:6289535" CDS complement(854589..854903) /locus_tag="Rpic_0810" /note="KEGG: rso:RSc0939 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898392.1" /db_xref="GI:187927905" /db_xref="InterPro:IPR001876" /db_xref="GeneID:6289535" /translation="MKLLISSPSLGMAAHWQNVLSAAGIRTELRNIYLSSVAGDVPPQ DCAAQVWLVNPAQEAQARALLDQAQHPPTGPAWRCAHCGESHEPQFAQCWRCGNNRED AA" sig_peptide complement(854589..854654) /locus_tag="Rpic_0810" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.696) with cleavage site probability 0.576 at residue 22" gene complement(854934..855881) /locus_tag="Rpic_0811" /db_xref="GeneID:6289536" CDS complement(854934..855881) /locus_tag="Rpic_0811" /note="EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity" /codon_start=1 /transl_table=11 /product="ribosome-associated GTPase" /protein_id="YP_001898393.1" /db_xref="GI:187927906" /db_xref="InterPro:IPR004881" /db_xref="InterPro:IPR010914" /db_xref="GeneID:6289536" /translation="MTRGKPGRAHKQAATGEHGLVIAAHGRHYLVERDGGGFLQCFPR GKRSECAVGDRVVYEATAVDQGVVVRVDERRNLLYRSDQFKSKVLAANLDQVIIMLGT EPSFSEDLLGRALVAAESLGITPLILLNKIDLTARLETARSRLALYRDLGYTIVELTV HGAPEAAHAALEPHVAGRASILIGQSGMGKSSLLNLLIPGVDAQTREISEKLDSGKHT TTFTRLYHLPADWGQGGMLIDSPGFQEFGLHHLSEGMLERAFPEFRPRLTECRFYNCR HLQEPGCGILGAMAEGKIDPRRHQLYAQLLHESEQQKPW" gene complement(855878..857137) /locus_tag="Rpic_0812" /db_xref="GeneID:6289537" CDS complement(855878..857137) /locus_tag="Rpic_0812" /EC_number="3.4.24.84" /note="PFAM: peptidase M48 Ste24p; KEGG: rso:RSc0941 probable integral membrane protease transmembrane protein" /codon_start=1 /transl_table=11 /product="Ste24 endopeptidase" /protein_id="YP_001898394.1" /db_xref="GI:187927907" /db_xref="InterPro:IPR001915" /db_xref="GeneID:6289537" /translation="MPAFTAVFLIALVLMSATRLWLAARQVRHVARHRDAVPAQFAES ITLDMHRKAADYTIARTRLAMLEVPVQAALLIALTLLGGLNWINQAWLGVFGPGYAYG VALIASVIAISSVVELPFSLYAQFVVEERFGFNRMTFKLWLADNLKGLAIGTVLGLPL LLAVLWLMDKMGAYWWLYTWIVWMAFMLFVQAIYPNVIAPLYNKFTPLQDEEMRSRIE SLLKRCGFASKGLFVMDGSRRSAHGNAYFSGFGATKRIVFFDTLLARLNPSEMEAVLA HELGHFKRHHITKRIAVTFVLSLGALALLGWLMTRTWFYLGLGVAPNLFSDNHALALM LFFLVLPVFTFFVSPLASLSSRKDEYEADAFAAEHADANQLVSALVKLFQDNASTLTP DPVYSTFYYSHPTASQRVERLVQARAA" sig_peptide complement(855878..855946) /locus_tag="Rpic_0812" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.747) with cleavage site probability 0.661 at residue 23" gene 857202..857861 /locus_tag="Rpic_0813" /db_xref="GeneID:6289538" CDS 857202..857861 /locus_tag="Rpic_0813" /note="3'-5' exoribonuclease specific for small oligoribonuclotides" /codon_start=1 /transl_table=11 /product="oligoribonuclease" /protein_id="YP_001898395.1" /db_xref="GI:187927908" /db_xref="InterPro:IPR006055" /db_xref="InterPro:IPR013520" /db_xref="GeneID:6289538" /translation="MSTPASTPVSLSATSLSTPSRVAAKSDNNLVWLDMEMTGLSPEN DRIIEVAVVVTDSELNILAEGPVLVIHQSDELLDGMDAWNKGTHGRSGLIDKVKASTT TEAEAEAELLAFLKKWVPKSKSPMCGNSICQDRRFMARYMPKLEAYFHYRNLDVSTLK ELCKRWQPAIAKGFTKHQRHTAFADIIESIEELRYYREHFIRDVPQTPDAEALASSVA P" sig_peptide 857202..857276 /locus_tag="Rpic_0813" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.992) with cleavage site probability 0.528 at residue 25" gene complement(857869..858516) /gene="mogA" /locus_tag="Rpic_0814" /db_xref="GeneID:6287161" CDS complement(857869..858516) /gene="mogA" /locus_tag="Rpic_0814" /note="forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis" /codon_start=1 /transl_table=11 /product="molybdenum cofactor biosynthesis protein" /protein_id="YP_001898396.1" /db_xref="GI:187927909" /db_xref="InterPro:IPR001453" /db_xref="InterPro:IPR008284" /db_xref="GeneID:6287161" /translation="MTAPASSAPITRRHPDELIVGFVSISDRASAGTYQDEGIPALRD WFGAALSSPWQCVERLIPDEQAAIAETLIDLVDHAGCDLVLTTGGTGPTRRDVTPEAT LAVATKEMPGFGEQMRQISLNFVPTAILSRQVAVIRETPSRATLIINLPGQPRAIKET LEGLRDVEGRATVPGIFAAVPYCIDLIGGPYVETHDSVVKAWRPKHAVRAKPQQV" gene complement(858513..859139) /locus_tag="Rpic_0815" /db_xref="GeneID:6287162" CDS complement(858513..859139) /locus_tag="Rpic_0815" /note="PFAM: protein of unknown function DUF615; KEGG: rso:RSc0944 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_001898397.1" /db_xref="GI:187927910" /db_xref="InterPro:IPR006839" /db_xref="GeneID:6287162" /translation="MRAMSRASRHNPTYLQPVVRTDIGDEDDPDTPKSKSQRKREVNA LQDLGTALEALPKDKLAKVPLPEKLVDALREAKRTTAHEGKRRQMQYIGKLMRALTDD EVEAIRRVLATFVGASKAETARLHAIERWRDRLIASDDAITEFIAAHPDADVQALRTL VRNARKEAQLAKPPKSSRELFQMVKQALSGNDRDEDDADQPEAEDDEA" gene 859213..860586 /locus_tag="Rpic_0816" /db_xref="GeneID:6287163" CDS 859213..860586 /locus_tag="Rpic_0816" /note="PFAM: peptidase U62 modulator of DNA gyrase; KEGG: rso:RSc0945 putative PmbA protein (TldE protein)" /codon_start=1 /transl_table=11 /product="peptidase U62 modulator of DNA gyrase" /protein_id="YP_001898398.1" /db_xref="GI:187