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PREDITOR Help Page:


1. Input file formats: BMRB, SHIFTY, FASTA
2. Example of PREDITOR output
3. Table 1. Scaling factors for calculation of PREDITOR similarity score
4. Table 2. Switch points between shift-based and homology-based PREDITOR predictions.
5. Table 3a. Relationship between PREDITOR confidence scores and φ/ψ errors for shift-only predictions.
6. Table 3b. Relationship between PREDITOR confidence scores and φ/ψ errors for predictions with PDB homologues.
7. Table 4. Confidence levels of χ 1 predictions.
8. Table 5. Scaling factors to correct the uncertainty of shift-based predictions when NMR assignments are incomplete.
9. Table 6. PREDITOR database (version 1.0; 141 proteins; built on April 10th, 2006)
10. Table 7. Comparison of accuracy and speed of dihedral angle predictions by PREDITOR and TALOS for a test set of 15 high-resolution XRAY structures
11. Table 8. Homology-based scaling factors of global errors.
12. Table A. Comparison of accuracy and speed of dihedral angle predictions by PREDITOR and TALOS for a training set of 31 proteins
13. Figure 1. PREDITOR protocol
14. Figure 2. Effect of β-sheet content on accuracy of PREDITOR predictions
15. Figure 3. Effect of sequence homology on PDB-based predictions of φ and ψ.
16. Figure 4. Effect of sequence homology on PDB-based predictions of χ-1.
17. PREDITOR limitations.

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